Wall clock time and date at job start Sat Apr 11 2020 00:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47221 * 269.99554 * 3 2 1 5 5 H 1.48492 * 109.47290 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47020 * 150.00090 * 3 2 1 7 7 C 1.37878 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46977 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46773 * 55.00373 * 10 9 7 12 12 N 1.46494 * 109.47366 * 295.00389 * 10 9 7 13 13 C 1.34780 * 119.99948 * 154.99653 * 12 10 9 14 14 O 1.21347 * 119.99921 * 0.02562 * 13 12 10 15 15 C 1.49447 * 119.99879 * 179.97438 * 13 12 10 16 16 O 1.21349 * 120.00045 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99882 * 180.02562 * 15 13 12 18 18 C 1.47588 * 134.49251 * 180.02562 * 17 15 13 19 19 C 1.53946 * 86.11448 * 155.35477 * 18 17 15 20 20 F 1.39905 * 113.73949 * 137.95433 * 19 18 17 21 21 C 1.47814 * 134.45942 * 359.86216 * 17 15 13 22 22 C 1.50703 * 109.46811 * 174.99892 * 10 9 7 23 23 C 1.38236 * 119.99398 * 79.73572 * 22 10 9 24 24 C 1.38238 * 119.99605 * 179.80660 * 23 22 10 25 25 C 1.38243 * 119.99853 * 0.39765 * 24 23 22 26 26 C 1.38230 * 119.99897 * 359.85000 * 25 24 23 27 27 C 1.38231 * 120.00410 * 359.96161 * 26 25 24 28 28 H 0.96993 * 119.99723 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46889 * 60.00378 * 9 7 2 30 30 H 1.08992 * 109.47656 * 300.00083 * 9 7 2 31 31 H 0.96996 * 119.99918 * 334.99658 * 12 10 9 32 32 H 1.09004 * 113.76426 * 41.05543 * 18 17 15 33 33 H 1.08990 * 113.76869 * 269.65458 * 18 17 15 34 34 H 1.09002 * 113.74429 * 269.15065 * 19 18 17 35 35 H 1.09000 * 113.76391 * 90.37880 * 21 17 15 36 36 H 1.09001 * 113.83494 * 318.92589 * 21 17 15 37 37 H 1.07995 * 120.00644 * 359.97438 * 23 22 10 38 38 H 1.07995 * 120.00055 * 180.22509 * 24 23 22 39 39 H 1.07998 * 119.99476 * 179.83564 * 25 24 23 40 40 H 1.08001 * 120.00101 * 179.97438 * 26 25 24 41 41 H 1.08006 * 120.00529 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 1 2.9294 -3.5553 0.8424 12 7 3.0064 -3.6540 -1.2512 13 6 4.2311 -4.2146 -1.2988 14 8 4.7031 -4.7265 -0.3050 15 6 5.0073 -4.2068 -2.5759 16 8 4.5350 -3.6953 -3.5698 17 7 6.2318 -4.7679 -2.6237 18 6 7.2508 -4.9386 -3.6775 19 6 8.2730 -5.0221 -2.5294 20 9 9.2406 -6.0166 -2.7080 21 6 7.0941 -5.4566 -1.6403 22 6 1.4958 -4.9637 0.1244 23 6 0.8895 -5.5204 -0.9862 24 6 0.2054 -6.7164 -0.8735 25 6 0.1207 -7.3513 0.3516 26 6 0.7226 -6.7919 1.4631 27 6 1.4100 -5.5980 1.3496 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6240 -2.5568 0.8902 31 1 2.6289 -3.2451 -2.0456 32 1 7.3756 -4.0626 -4.3141 33 1 7.1478 -5.8652 -4.2422 34 1 8.7003 -4.0586 -2.2514 35 1 6.9448 -6.5357 -1.6050 36 1 7.0940 -4.9933 -0.6537 37 1 0.9526 -5.0225 -1.9424 38 1 -0.2652 -7.1532 -1.7418 39 1 -0.4161 -8.2843 0.4401 40 1 0.6560 -7.2878 2.4203 41 1 1.8800 -5.1607 2.2182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117610835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:51 Heat of formation + Delta-G solvation = -56.422614 kcal Electronic energy + Delta-G solvation = -26576.979315 eV Core-core repulsion = 22565.582137 eV Total energy + Delta-G solvation = -4011.397177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.99152 -40.63286 -39.37928 -38.34392 -37.49581 -35.37855 -32.79031 -31.20739 -30.51895 -29.80192 -28.88389 -26.80645 -25.42874 -23.88709 -22.36856 -22.03509 -21.64794 -19.93836 -19.47460 -17.92552 -17.34658 -17.05369 -16.82228 -16.20759 -15.75993 -15.61043 -15.41428 -14.91935 -14.69430 -14.59430 -14.39739 -13.82304 -13.70008 -13.29359 -13.10446 -13.04001 -12.83693 -12.71585 -12.56132 -12.15305 -11.86916 -11.66043 -11.36182 -11.17601 -11.00334 -10.94310 -10.76886 -10.65320 -10.50693 -9.85409 -9.42899 -9.28680 -9.10646 -8.69260 -8.57212 -8.48332 -8.26573 -6.11819 -4.15861 1.61433 1.69334 1.74334 2.17867 3.26812 3.33707 3.36755 3.38843 3.48896 3.68000 4.03341 4.15458 4.37932 4.50356 4.65954 4.77343 5.01293 5.13938 5.20043 5.21213 5.22107 5.25355 5.30744 5.46749 5.47866 5.75211 5.83737 5.86540 6.03995 6.26861 6.35080 6.46783 6.63792 6.78330 6.79688 7.00100 7.15480 7.33451 7.40145 7.44103 7.60847 7.83515 7.95513 8.19870 8.36660 8.89018 9.49646 10.98675 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.004759 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.053138 B = 5882.552509 C = 8426.630589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.183 3.817 11 H 0.092 0.908 12 N -0.664 5.664 13 C 0.508 3.492 14 O -0.528 6.528 15 C 0.536 3.464 16 O -0.512 6.512 17 N -0.625 5.625 18 C 0.088 3.912 19 C 0.052 3.948 20 F -0.197 7.197 21 C 0.093 3.907 22 C -0.076 4.076 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.263 0.737 29 H 0.027 0.973 30 H 0.039 0.961 31 H 0.414 0.586 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.333 -13.379 -3.418 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.080 3.920 11 H 0.110 0.890 12 N -0.314 5.314 13 C 0.287 3.713 14 O -0.405 6.405 15 C 0.321 3.679 16 O -0.386 6.386 17 N -0.363 5.363 18 C -0.035 4.035 19 C 0.015 3.985 20 F -0.178 7.178 21 C -0.030 4.030 22 C -0.077 4.077 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.250 0.750 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.024 -13.240 -3.235 16.919 hybrid contribution 0.171 1.060 -0.447 1.163 sum 10.195 -12.180 -3.683 16.305 Atomic orbital electron populations 1.69951 1.06020 1.26920 1.49992 1.24971 0.94808 0.99260 0.94940 0.86584 0.79861 0.83340 0.78212 1.20571 1.21154 1.19864 1.21099 0.93026 0.90374 1.51706 0.92442 1.19427 0.93152 0.89897 0.98938 1.20439 0.93506 0.92585 0.85467 0.88984 1.45863 1.15368 1.54851 1.15359 1.19727 0.83117 0.80552 0.87871 1.90696 1.69239 1.44971 1.35623 1.20166 0.79763 0.78425 0.89573 1.90781 1.67361 1.43820 1.36640 1.49326 1.15600 1.56591 1.14792 1.23861 0.82880 1.04025 0.92725 1.23756 0.85812 0.91267 0.97654 1.92841 1.65482 1.63551 1.95920 1.23934 0.83769 0.99541 0.95734 1.20471 0.97305 0.96332 0.93566 1.20961 0.97454 0.95643 0.98579 1.21058 0.99811 0.95881 0.97449 1.21022 1.00833 1.00032 0.93177 1.21045 0.98527 0.96165 0.98325 1.21004 0.99128 0.95036 0.97272 0.92781 0.95463 0.94290 0.74965 0.88347 0.88242 0.85710 0.88205 0.87280 0.86448 0.86617 0.86738 0.86490 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.81 8.84 -34.44 -0.30 -14.12 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16 10 C 0.18 3.65 2.11 -69.08 -0.15 3.51 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 12 N -0.66 -12.44 4.03 -55.36 -0.22 -12.66 16 13 C 0.51 9.08 7.85 -11.58 -0.09 8.99 16 14 O -0.53 -9.90 14.75 5.50 0.08 -9.82 16 15 C 0.54 8.76 8.12 -11.59 -0.09 8.67 16 16 O -0.51 -9.42 17.21 5.50 0.09 -9.33 16 17 N -0.63 -7.93 3.61 -179.01 -0.65 -8.58 16 18 C 0.09 0.79 8.73 -2.96 -0.03 0.77 16 19 C 0.05 0.42 5.85 -25.82 -0.15 0.27 16 20 F -0.20 -1.79 17.42 2.25 0.04 -1.76 16 21 C 0.09 0.94 7.65 -2.85 -0.02 0.91 16 22 C -0.08 -1.37 4.91 -104.62 -0.51 -1.88 16 23 C -0.11 -1.82 9.32 -39.58 -0.37 -2.18 16 24 C -0.12 -1.82 10.05 -39.58 -0.40 -2.21 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 27 C -0.11 -1.75 9.67 -39.58 -0.38 -2.14 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.41 7.75 8.07 -40.82 -0.33 7.42 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.16 7.42 -51.93 -0.39 0.77 16 37 H 0.12 1.92 7.73 -52.49 -0.41 1.51 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.89 8.04 -52.48 -0.42 1.47 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -31.47 362.08 -8.27 -39.74 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.27 Total: 7.37 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.52 Total: -1.77 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.13 Total: -45.98 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.47 -8.27 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117610835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.684 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds