Wall clock time and date at job start Sat Apr 11 2020 00:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47221 * 269.99554 * 3 2 1 5 5 H 1.48492 * 109.47290 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47020 * 150.00090 * 3 2 1 7 7 C 1.37878 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46977 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46773 * 55.00373 * 10 9 7 12 12 N 1.46494 * 109.47366 * 295.00389 * 10 9 7 13 13 C 1.34780 * 119.99948 * 154.99653 * 12 10 9 14 14 O 1.21347 * 119.99921 * 0.02562 * 13 12 10 15 15 C 1.49447 * 119.99879 * 179.97438 * 13 12 10 16 16 O 1.21349 * 120.00045 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99882 * 180.02562 * 15 13 12 18 18 C 1.47588 * 134.49251 * 180.02562 * 17 15 13 19 19 C 1.53946 * 86.11448 * 155.35477 * 18 17 15 20 20 F 1.39905 * 113.73949 * 137.95433 * 19 18 17 21 21 C 1.47814 * 134.45942 * 359.86216 * 17 15 13 22 22 C 1.50703 * 109.46811 * 174.99892 * 10 9 7 23 23 C 1.38236 * 119.99398 * 79.73572 * 22 10 9 24 24 C 1.38238 * 119.99605 * 179.80660 * 23 22 10 25 25 C 1.38243 * 119.99853 * 0.39765 * 24 23 22 26 26 C 1.38230 * 119.99897 * 359.85000 * 25 24 23 27 27 C 1.38231 * 120.00410 * 359.96161 * 26 25 24 28 28 H 0.96993 * 119.99723 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46889 * 60.00378 * 9 7 2 30 30 H 1.08992 * 109.47656 * 300.00083 * 9 7 2 31 31 H 0.96996 * 119.99918 * 334.99658 * 12 10 9 32 32 H 1.09004 * 113.76426 * 41.05543 * 18 17 15 33 33 H 1.08990 * 113.76869 * 269.65458 * 18 17 15 34 34 H 1.09002 * 113.74429 * 269.15065 * 19 18 17 35 35 H 1.09000 * 113.76391 * 90.37880 * 21 17 15 36 36 H 1.09001 * 113.83494 * 318.92589 * 21 17 15 37 37 H 1.07995 * 120.00644 * 359.97438 * 23 22 10 38 38 H 1.07995 * 120.00055 * 180.22509 * 24 23 22 39 39 H 1.07998 * 119.99476 * 179.83564 * 25 24 23 40 40 H 1.08001 * 120.00101 * 179.97438 * 26 25 24 41 41 H 1.08006 * 120.00529 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 1 2.9294 -3.5553 0.8424 12 7 3.0064 -3.6540 -1.2512 13 6 4.2311 -4.2146 -1.2988 14 8 4.7031 -4.7265 -0.3050 15 6 5.0073 -4.2068 -2.5759 16 8 4.5350 -3.6953 -3.5698 17 7 6.2318 -4.7679 -2.6237 18 6 7.2508 -4.9386 -3.6775 19 6 8.2730 -5.0221 -2.5294 20 9 9.2406 -6.0166 -2.7080 21 6 7.0941 -5.4566 -1.6403 22 6 1.4958 -4.9637 0.1244 23 6 0.8895 -5.5204 -0.9862 24 6 0.2054 -6.7164 -0.8735 25 6 0.1207 -7.3513 0.3516 26 6 0.7226 -6.7919 1.4631 27 6 1.4100 -5.5980 1.3496 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6240 -2.5568 0.8902 31 1 2.6289 -3.2451 -2.0456 32 1 7.3756 -4.0626 -4.3141 33 1 7.1478 -5.8652 -4.2422 34 1 8.7003 -4.0586 -2.2514 35 1 6.9448 -6.5357 -1.6050 36 1 7.0940 -4.9933 -0.6537 37 1 0.9526 -5.0225 -1.9424 38 1 -0.2652 -7.1532 -1.7418 39 1 -0.4161 -8.2843 0.4401 40 1 0.6560 -7.2878 2.4203 41 1 1.8800 -5.1607 2.2182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117610835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:50 Heat of formation + Delta-G solvation = -75.556778 kcal Electronic energy + Delta-G solvation = -26577.809034 eV Core-core repulsion = 22565.582137 eV Total energy + Delta-G solvation = -4012.226897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.70458 -41.89085 -40.61051 -39.54990 -38.70613 -36.93214 -34.77785 -32.63227 -31.72151 -30.85609 -30.58190 -27.65697 -27.06144 -25.24373 -23.84367 -23.39101 -22.64566 -21.35626 -20.68142 -19.13256 -18.62326 -18.28167 -18.11364 -17.67095 -17.06640 -16.77085 -16.63826 -16.28875 -16.11116 -15.78765 -15.56050 -15.05843 -14.95146 -14.51666 -14.28080 -14.21378 -14.16456 -13.98727 -13.71929 -13.62367 -13.50320 -12.98193 -12.87381 -12.65003 -12.53013 -12.39362 -12.18477 -11.90581 -11.72507 -11.65054 -11.38329 -10.73582 -10.58065 -10.23382 -10.08119 -9.78157 -9.56709 -8.22607 -6.32976 0.28178 0.45953 0.53628 1.05640 1.38458 1.39235 1.49380 2.07286 2.27334 2.38225 2.88901 2.93943 3.11160 3.22641 3.35309 3.87172 3.91526 3.99514 4.02604 4.18761 4.20566 4.30475 4.36216 4.39881 4.43273 4.59033 4.62335 4.70893 4.75281 5.04557 5.05169 5.11831 5.18125 5.38011 5.50140 5.58941 5.62478 5.74246 5.77132 6.05172 6.11639 6.16160 6.18883 6.58228 6.79034 6.92098 7.36026 8.88181 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.004759 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.053138 B = 5882.552509 C = 8426.630589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.036 3.964 10 C 0.200 3.800 11 H 0.075 0.925 12 N -0.668 5.668 13 C 0.506 3.494 14 O -0.539 6.539 15 C 0.536 3.464 16 O -0.542 6.542 17 N -0.625 5.625 18 C 0.085 3.915 19 C 0.073 3.927 20 F -0.199 7.199 21 C 0.085 3.915 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.264 0.736 29 H 0.009 0.991 30 H 0.014 0.986 31 H 0.412 0.588 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.593 -14.877 -3.673 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.072 0.928 9 C -0.002 4.002 10 C 0.096 3.904 11 H 0.093 0.907 12 N -0.318 5.318 13 C 0.286 3.714 14 O -0.418 6.418 15 C 0.320 3.680 16 O -0.419 6.419 17 N -0.361 5.361 18 C -0.036 4.036 19 C 0.037 3.963 20 F -0.179 7.179 21 C -0.037 4.037 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.248 0.752 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.342 -14.770 -3.484 18.946 hybrid contribution -0.188 1.395 -0.339 1.448 sum 11.154 -13.375 -3.823 17.831 Atomic orbital electron populations 1.70063 1.07443 1.27796 1.51132 1.25769 0.95591 1.02676 0.94676 0.85595 0.78720 0.79287 0.78362 1.20036 1.20627 1.19275 1.21395 0.93014 0.91636 1.51016 0.92786 1.19165 0.93309 0.90963 0.96723 1.19963 0.92410 0.92562 0.85489 0.90655 1.45794 1.15953 1.55334 1.14710 1.20087 0.82714 0.79883 0.88670 1.90673 1.69387 1.45365 1.36329 1.19713 0.80812 0.79186 0.88280 1.90761 1.68430 1.45706 1.36987 1.49461 1.14521 1.54946 1.17128 1.24177 0.81365 1.05366 0.92694 1.23609 0.85029 0.91701 0.95999 1.92848 1.65371 1.63892 1.95821 1.24168 0.84086 0.99963 0.95462 1.20350 0.98817 0.96045 0.94978 1.21056 0.98427 0.96922 0.97995 1.21410 0.98942 0.94874 0.99121 1.21488 0.99701 1.00893 0.92251 1.21420 0.97213 0.95077 1.00118 1.21187 1.00147 0.96322 0.96683 0.92662 0.97315 0.96794 0.75225 0.87291 0.86602 0.83609 0.87128 0.87925 0.87068 0.83947 0.83003 0.83404 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.33 13.29 21.45 0.28 -54.05 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -29.08 8.84 25.60 0.23 -28.86 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.04 1.80 4.49 29.85 0.13 1.93 16 10 C 0.20 8.39 2.11 44.25 0.09 8.48 16 11 H 0.08 3.36 7.44 -2.38 -0.02 3.34 16 12 N -0.67 -26.24 4.03 -447.43 -1.81 -28.04 16 13 C 0.51 18.58 7.85 87.27 0.68 19.27 16 14 O -0.54 -20.61 14.75 -3.24 -0.05 -20.65 16 15 C 0.54 17.60 8.12 87.27 0.71 18.31 16 16 O -0.54 -20.20 17.21 -3.24 -0.06 -20.25 16 17 N -0.62 -15.14 3.61 -838.62 -3.03 -18.17 16 18 C 0.09 1.35 8.73 86.48 0.76 2.10 16 19 C 0.07 0.99 5.85 31.25 0.18 1.17 16 20 F -0.20 -3.06 17.42 44.97 0.78 -2.28 16 21 C 0.09 1.58 7.65 86.43 0.66 2.24 16 22 C -0.10 -3.76 4.91 -19.86 -0.10 -3.86 16 23 C -0.13 -4.28 9.32 22.27 0.21 -4.08 16 24 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 25 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 26 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 27 C -0.12 -4.16 9.67 22.27 0.22 -3.95 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.01 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.41 16.37 8.07 -92.71 -0.75 15.62 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 2.08 7.42 -2.39 -0.02 2.06 16 37 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.12 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -69.38 362.08 3.37 -66.01 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.31 Total: 26.78 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 4.90 Total: 4.79 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -4.55 Total: -100.27 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.10 Total: -40.90 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.38 3.37 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117610835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.544 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds