Wall clock time and date at job start Sat Apr 11 2020 00:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46933 * 240.00129 * 3 2 1 5 5 H 1.48504 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47409 * 119.99889 * 3 2 1 7 7 C 1.38813 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00001 * 164.86581 * 7 2 1 9 9 N 1.36942 * 120.00017 * 344.86942 * 7 2 1 10 10 C 1.46933 * 120.62893 * 325.36588 * 9 7 2 11 11 C 1.53185 * 108.89084 * 233.51695 * 10 9 7 12 12 C 1.53075 * 109.29605 * 305.57784 * 11 10 9 13 13 O 1.42901 * 109.45701 * 181.24737 * 12 11 10 14 14 C 1.34903 * 117.00180 * 89.78687 * 13 12 11 15 15 O 1.21620 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.46239 * 119.99876 * 180.02562 * 14 13 12 17 17 C 1.34912 * 119.99997 * 174.20814 * 16 14 13 18 18 C 1.47186 * 119.99913 * 347.73534 * 17 16 14 19 19 C 1.39850 * 120.57361 * 132.81837 * 18 17 16 20 20 N 1.31621 * 120.57935 * 180.02562 * 19 18 17 21 21 C 1.31951 * 121.93267 * 359.97438 * 20 19 18 22 22 C 1.38588 * 121.10774 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.35467 * 180.02562 * 22 21 20 24 24 C 1.38533 * 119.28411 * 359.76804 * 22 21 20 25 25 C 1.53046 * 109.65997 * 61.15298 * 12 11 10 26 26 C 1.46921 * 120.62969 * 145.34335 * 9 7 2 27 27 H 0.96994 * 119.99744 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.58622 * 353.37139 * 10 9 7 29 29 H 1.08996 * 109.58528 * 113.65512 * 10 9 7 30 30 H 1.08998 * 109.49966 * 65.38569 * 11 10 9 31 31 H 1.09002 * 109.49960 * 185.48987 * 11 10 9 32 32 H 1.09007 * 109.33399 * 301.13716 * 12 11 10 33 33 H 1.07997 * 119.99971 * 354.20320 * 16 14 13 34 34 H 1.07998 * 119.99922 * 167.73980 * 17 16 14 35 35 H 1.08001 * 119.71254 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.44951 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.87780 * 180.28012 * 24 22 21 38 38 H 1.09001 * 109.49735 * 178.75178 * 25 12 11 39 39 H 1.08996 * 109.49437 * 58.65090 * 25 12 11 40 40 H 1.09005 * 109.58871 * 246.19709 * 26 9 7 41 41 H 1.08994 * 109.58995 * 6.47850 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0622 -1.2185 -0.2436 9 7 1.3612 -2.3674 0.3106 10 6 0.2835 -2.3811 1.3093 11 6 0.5997 -3.4445 2.3656 12 6 0.8370 -4.7894 1.6741 13 8 1.1037 -5.7903 2.6586 14 6 0.0426 -6.4598 3.1544 15 8 -1.0783 -6.2004 2.7603 16 6 0.2403 -7.4976 4.1656 17 6 -0.8261 -8.0854 4.7464 18 6 -2.1694 -7.5096 4.5720 19 6 -3.2535 -8.3241 4.2296 20 7 -4.4547 -7.8093 4.0731 21 6 -4.6873 -6.5200 4.2304 22 6 -3.6681 -5.6448 4.5707 23 9 -3.9235 -4.3275 4.7284 24 6 -2.3856 -6.1360 4.7526 25 6 2.0323 -4.6765 0.7250 26 6 1.7289 -3.6275 -0.3493 27 1 -0.4849 0.8400 0.0004 28 1 0.2138 -1.4029 1.7851 29 1 -0.6624 -2.6191 0.8228 30 1 1.4962 -3.1567 2.9146 31 1 -0.2387 -3.5313 3.0567 32 1 -0.0521 -5.0656 1.1071 33 1 1.2400 -7.7934 4.4474 34 1 -0.6942 -8.9784 5.3393 35 1 -3.1036 -9.3847 4.0915 36 1 -5.6890 -6.1405 4.0925 37 1 -1.5730 -5.4778 5.0224 38 1 2.2127 -5.6413 0.2509 39 1 2.9163 -4.3760 1.2875 40 1 0.9012 -3.9698 -0.9706 41 1 2.6112 -3.4712 -0.9699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122715014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:00 Heat of formation + Delta-G solvation = -50.037573 kcal Electronic energy + Delta-G solvation = -26826.167224 eV Core-core repulsion = 22815.046923 eV Total energy + Delta-G solvation = -4011.120301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.00609 -40.80078 -39.91276 -37.68105 -36.06043 -34.60103 -32.72022 -31.83388 -30.60467 -30.17322 -29.72111 -25.92971 -24.82231 -23.75885 -23.00705 -22.29709 -21.62409 -19.83929 -19.28858 -18.22953 -17.40979 -17.28192 -17.06670 -16.79201 -15.93997 -15.85616 -15.50608 -14.86348 -14.58433 -14.16889 -13.95449 -13.74623 -13.59383 -13.45040 -13.28600 -13.18143 -12.91345 -12.69274 -12.48430 -12.30468 -11.54743 -11.32654 -11.23337 -11.00445 -10.76344 -10.64612 -10.36980 -10.35295 -10.23318 -9.98783 -9.82688 -9.70394 -9.41145 -9.34360 -8.82798 -8.50572 -6.65141 -5.83328 -3.33328 0.15998 0.87864 1.29815 2.85375 2.91194 3.36553 3.42283 3.43323 3.44622 3.84693 4.17241 4.30423 4.46028 4.53489 4.56962 4.73668 4.90960 5.11167 5.21590 5.34304 5.36712 5.39872 5.51582 5.58267 5.60907 5.69538 5.73296 5.88028 6.00280 6.18843 6.24595 6.41352 6.42304 6.48854 6.55101 6.68972 6.83837 6.92404 7.24084 7.53058 7.59492 7.77817 7.90113 8.44488 9.16532 9.77612 10.38531 11.25355 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.003350 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.017584 B = 8356.908635 C = 9457.398486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.011 3.989 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.180 3.820 11 C -0.153 4.153 12 C 0.096 3.904 13 O -0.347 6.347 14 C 0.480 3.520 15 O -0.499 6.499 16 C -0.169 4.169 17 C -0.024 4.024 18 C -0.092 4.092 19 C 0.105 3.895 20 N -0.462 5.462 21 C 0.081 3.919 22 C 0.050 3.950 23 F -0.128 7.128 24 C -0.049 4.049 25 C -0.127 4.127 26 C 0.148 3.852 27 H 0.256 0.744 28 H 0.081 0.919 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.020 0.980 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -18.181 11.834 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.189 4.189 3 Si 0.733 3.267 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.193 4.193 12 C 0.042 3.958 13 O -0.263 6.263 14 C 0.325 3.675 15 O -0.389 6.389 16 C -0.187 4.187 17 C -0.043 4.043 18 C -0.094 4.094 19 C -0.053 4.053 20 N -0.170 5.170 21 C -0.078 4.078 22 C 0.029 3.971 23 F -0.106 7.106 24 C -0.076 4.076 25 C -0.166 4.166 26 C 0.021 3.979 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.157 0.843 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.015 -18.392 11.433 22.025 hybrid contribution 1.081 1.813 0.130 2.115 sum -2.934 -16.579 11.563 20.425 Atomic orbital electron populations 1.70017 1.05411 1.25902 1.52711 1.25244 0.95270 0.98681 0.99706 0.86371 0.78965 0.83155 0.78234 1.20703 1.21560 1.20849 1.19070 0.91821 0.84374 1.44105 0.91873 1.44015 1.41164 1.03565 1.42524 1.20634 0.90053 0.96212 0.87743 1.22677 1.00999 0.95336 1.00239 1.22527 0.99854 0.85653 0.87767 1.86228 1.37207 1.48533 1.54347 1.21406 0.83315 0.80773 0.82006 1.90944 1.24559 1.64893 1.58520 1.22534 1.00798 0.97454 0.97953 1.22358 0.89817 0.96852 0.95228 1.19780 0.94955 0.93116 1.01557 1.22925 0.86811 1.00145 0.95393 1.67625 1.23398 1.12741 1.13193 1.22922 0.99275 0.88706 0.96890 1.18590 0.95017 0.79377 1.04137 1.91557 1.94611 1.31367 1.93080 1.21633 0.95633 0.94856 0.95462 1.22231 0.96958 0.99952 0.97487 1.20899 0.98408 0.86484 0.92077 0.93412 0.90037 0.95860 0.91743 0.93052 0.90533 0.83139 0.82820 0.81943 0.81669 0.84336 0.92326 0.91184 0.96199 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.59 55.49 0.64 -25.68 16 2 C 0.01 0.31 4.91 -17.43 -0.09 0.22 16 3 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -7.26 9.51 -15.06 -0.14 -7.40 16 8 H 0.06 1.69 7.87 -52.49 -0.41 1.28 16 9 N -0.59 -14.94 2.96 -172.32 -0.51 -15.45 16 10 C 0.18 4.40 5.26 -3.71 -0.02 4.38 16 11 C -0.15 -3.09 5.71 -26.60 -0.15 -3.24 16 12 C 0.10 1.77 2.36 -26.67 -0.06 1.71 16 13 O -0.35 -5.54 9.77 -41.05 -0.40 -5.94 16 14 C 0.48 6.82 7.09 33.94 0.24 7.06 16 15 O -0.50 -8.39 11.72 -19.36 -0.23 -8.62 16 16 C -0.17 -1.55 10.06 -37.55 -0.38 -1.92 16 17 C -0.02 -0.18 9.81 -37.13 -0.36 -0.54 16 18 C -0.09 -0.96 4.35 -104.92 -0.46 -1.41 16 19 C 0.10 1.05 10.96 -17.04 -0.19 0.87 16 20 N -0.46 -5.52 10.34 -12.78 -0.13 -5.65 16 21 C 0.08 0.95 11.16 -17.37 -0.19 0.76 16 22 C 0.05 0.66 7.33 -39.34 -0.29 0.37 16 23 F -0.13 -1.83 17.28 2.25 0.04 -1.79 16 24 C -0.05 -0.62 6.91 -38.73 -0.27 -0.89 16 25 C -0.13 -2.27 5.73 -26.61 -0.15 -2.42 16 26 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.08 2.20 6.52 -51.93 -0.34 1.86 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.52 7.11 -51.93 -0.37 1.15 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.14 1.74 7.54 -52.49 -0.40 1.35 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -32.69 348.62 -8.19 -40.88 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.29 Total: -0.24 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.53 Total: 0.64 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.00 Total: -46.78 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.63 Total: -14.56 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.69 -8.19 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122715014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.156 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds