Wall clock time and date at job start Sat Apr 11 2020 00:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46933 * 240.00129 * 3 2 1 5 5 H 1.48504 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47409 * 119.99889 * 3 2 1 7 7 C 1.38813 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00001 * 164.86581 * 7 2 1 9 9 N 1.36942 * 120.00017 * 344.86942 * 7 2 1 10 10 C 1.46933 * 120.62893 * 325.36588 * 9 7 2 11 11 C 1.53185 * 108.89084 * 233.51695 * 10 9 7 12 12 C 1.53075 * 109.29605 * 305.57784 * 11 10 9 13 13 O 1.42901 * 109.45701 * 181.24737 * 12 11 10 14 14 C 1.34903 * 117.00180 * 89.78687 * 13 12 11 15 15 O 1.21620 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.46239 * 119.99876 * 180.02562 * 14 13 12 17 17 C 1.34912 * 119.99997 * 174.20814 * 16 14 13 18 18 C 1.47186 * 119.99913 * 347.73534 * 17 16 14 19 19 C 1.39850 * 120.57361 * 132.81837 * 18 17 16 20 20 N 1.31621 * 120.57935 * 180.02562 * 19 18 17 21 21 C 1.31951 * 121.93267 * 359.97438 * 20 19 18 22 22 C 1.38588 * 121.10774 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.35467 * 180.02562 * 22 21 20 24 24 C 1.38533 * 119.28411 * 359.76804 * 22 21 20 25 25 C 1.53046 * 109.65997 * 61.15298 * 12 11 10 26 26 C 1.46921 * 120.62969 * 145.34335 * 9 7 2 27 27 H 0.96994 * 119.99744 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.58622 * 353.37139 * 10 9 7 29 29 H 1.08996 * 109.58528 * 113.65512 * 10 9 7 30 30 H 1.08998 * 109.49966 * 65.38569 * 11 10 9 31 31 H 1.09002 * 109.49960 * 185.48987 * 11 10 9 32 32 H 1.09007 * 109.33399 * 301.13716 * 12 11 10 33 33 H 1.07997 * 119.99971 * 354.20320 * 16 14 13 34 34 H 1.07998 * 119.99922 * 167.73980 * 17 16 14 35 35 H 1.08001 * 119.71254 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.44951 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.87780 * 180.28012 * 24 22 21 38 38 H 1.09001 * 109.49735 * 178.75178 * 25 12 11 39 39 H 1.08996 * 109.49437 * 58.65090 * 25 12 11 40 40 H 1.09005 * 109.58871 * 246.19709 * 26 9 7 41 41 H 1.08994 * 109.58995 * 6.47850 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0622 -1.2185 -0.2436 9 7 1.3612 -2.3674 0.3106 10 6 0.2835 -2.3811 1.3093 11 6 0.5997 -3.4445 2.3656 12 6 0.8370 -4.7894 1.6741 13 8 1.1037 -5.7903 2.6586 14 6 0.0426 -6.4598 3.1544 15 8 -1.0783 -6.2004 2.7603 16 6 0.2403 -7.4976 4.1656 17 6 -0.8261 -8.0854 4.7464 18 6 -2.1694 -7.5096 4.5720 19 6 -3.2535 -8.3241 4.2296 20 7 -4.4547 -7.8093 4.0731 21 6 -4.6873 -6.5200 4.2304 22 6 -3.6681 -5.6448 4.5707 23 9 -3.9235 -4.3275 4.7284 24 6 -2.3856 -6.1360 4.7526 25 6 2.0323 -4.6765 0.7250 26 6 1.7289 -3.6275 -0.3493 27 1 -0.4849 0.8400 0.0004 28 1 0.2138 -1.4029 1.7851 29 1 -0.6624 -2.6191 0.8228 30 1 1.4962 -3.1567 2.9146 31 1 -0.2387 -3.5313 3.0567 32 1 -0.0521 -5.0656 1.1071 33 1 1.2400 -7.7934 4.4474 34 1 -0.6942 -8.9784 5.3393 35 1 -3.1036 -9.3847 4.0915 36 1 -5.6890 -6.1405 4.0925 37 1 -1.5730 -5.4778 5.0224 38 1 2.2127 -5.6413 0.2509 39 1 2.9163 -4.3760 1.2875 40 1 0.9012 -3.9698 -0.9706 41 1 2.6112 -3.4712 -0.9699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122715014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:59 Heat of formation + Delta-G solvation = -69.050615 kcal Electronic energy + Delta-G solvation = -26826.991692 eV Core-core repulsion = 22815.046923 eV Total energy + Delta-G solvation = -4011.944769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.05911 -41.90168 -40.90662 -39.17776 -37.51715 -35.46651 -34.60912 -32.75041 -32.12858 -31.66999 -31.14749 -27.43003 -26.16445 -24.77175 -24.20326 -24.02274 -23.05407 -21.15763 -20.66944 -19.24432 -18.90299 -18.30920 -18.25218 -17.95057 -17.13409 -16.94948 -16.79934 -16.68933 -15.79445 -15.48342 -15.30309 -15.05419 -14.93420 -14.74731 -14.55796 -14.31741 -14.23924 -14.09515 -13.75034 -13.28629 -13.18597 -13.11946 -12.88504 -12.63376 -12.43401 -12.17438 -12.03016 -11.96142 -11.83877 -11.49263 -11.21638 -11.05325 -10.70499 -10.60657 -10.30979 -9.64586 -8.71393 -7.94272 -5.48446 -0.64669 -0.02703 0.46181 1.45180 1.47785 1.54882 1.78471 1.90260 2.47134 2.59079 2.98456 3.22572 3.36696 3.52495 3.54392 3.65116 3.70392 3.77154 3.82265 3.84447 4.10945 4.13207 4.33849 4.51232 4.52182 4.56817 4.67016 4.75990 4.76661 4.82542 4.85242 4.92408 4.98372 5.03782 5.19707 5.27963 5.31392 5.48027 5.54908 5.61098 5.62387 6.35300 6.73330 6.75343 7.07189 7.74234 8.31593 9.12757 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.003350 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.017584 B = 8356.908635 C = 9457.398486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.044 4.044 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.274 4.274 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.190 3.810 11 C -0.138 4.138 12 C 0.108 3.892 13 O -0.344 6.344 14 C 0.470 3.530 15 O -0.534 6.534 16 C -0.181 4.181 17 C 0.009 3.991 18 C -0.098 4.098 19 C 0.109 3.891 20 N -0.478 5.478 21 C 0.075 3.925 22 C 0.021 3.979 23 F -0.144 7.144 24 C -0.064 4.064 25 C -0.113 4.113 26 C 0.143 3.857 27 H 0.251 0.749 28 H 0.048 0.952 29 H -0.008 1.008 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.187 0.813 34 H 0.212 0.788 35 H 0.203 0.797 36 H 0.181 0.819 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.012 0.988 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -21.162 12.930 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.240 4.240 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.404 4.404 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.064 3.936 11 C -0.177 4.177 12 C 0.052 3.948 13 O -0.260 6.260 14 C 0.319 3.681 15 O -0.425 6.425 16 C -0.200 4.200 17 C -0.009 4.009 18 C -0.100 4.100 19 C -0.048 4.048 20 N -0.186 5.186 21 C -0.082 4.082 22 C -0.001 4.001 23 F -0.123 7.123 24 C -0.090 4.090 25 C -0.152 4.152 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.010 0.990 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.204 0.796 34 H 0.228 0.772 35 H 0.220 0.780 36 H 0.198 0.802 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.030 0.970 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.082 -21.408 12.535 24.895 hybrid contribution 0.407 2.620 -0.201 2.659 sum -1.675 -18.787 12.335 22.537 Atomic orbital electron populations 1.70187 1.07083 1.26271 1.54434 1.26067 0.95988 1.02097 0.99870 0.85299 0.77574 0.78645 0.78658 1.19562 1.22129 1.20054 1.19469 0.92345 0.85415 1.43204 0.91164 1.44271 1.40995 1.04590 1.43344 1.20322 0.89001 0.95885 0.88390 1.22404 1.00953 0.95508 0.98834 1.22108 0.99411 0.85179 0.88086 1.86231 1.38035 1.47989 1.53794 1.22506 0.82349 0.80946 0.82348 1.90951 1.25630 1.66101 1.59845 1.22707 1.03161 0.96324 0.97786 1.22904 0.87180 0.97133 0.93725 1.20172 0.96966 0.92164 1.00725 1.23611 0.85942 1.01835 0.93427 1.67700 1.24624 1.12464 1.13789 1.23158 0.99725 0.88817 0.96524 1.18901 0.96109 0.79035 1.06033 1.91504 1.94792 1.32552 1.93463 1.21757 0.95071 0.96148 0.96051 1.22029 0.96478 1.00264 0.96428 1.21058 0.98356 0.85656 0.93161 0.93978 0.93327 0.98951 0.91471 0.93058 0.92436 0.79582 0.77175 0.78021 0.80219 0.85281 0.89013 0.90747 0.96975 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 11.59 21.65 0.25 -56.79 16 2 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 3 Si 0.97 45.10 29.58 68.60 2.03 47.13 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.27 -15.27 9.51 84.03 0.80 -14.47 16 8 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 9 N -0.61 -31.50 2.96 -699.10 -2.07 -33.56 16 10 C 0.19 9.78 5.26 86.36 0.45 10.23 16 11 C -0.14 -5.70 5.71 30.68 0.18 -5.52 16 12 C 0.11 3.91 2.36 30.63 0.07 3.98 16 13 O -0.34 -10.40 9.77 -58.18 -0.57 -10.97 16 14 C 0.47 12.60 7.09 69.90 0.50 13.10 16 15 O -0.53 -17.83 11.72 19.44 0.23 -17.60 16 16 C -0.18 -2.61 10.06 23.59 0.24 -2.37 16 17 C 0.01 0.09 9.81 23.86 0.23 0.32 16 18 C -0.10 -1.80 4.35 -20.06 -0.09 -1.89 16 19 C 0.11 1.89 10.96 85.11 0.93 2.82 16 20 N -0.48 -10.80 10.34 -194.33 -2.01 -12.81 16 21 C 0.08 1.81 11.16 84.76 0.95 2.75 16 22 C 0.02 0.57 7.33 22.42 0.16 0.73 16 23 F -0.14 -4.47 17.28 44.97 0.78 -3.69 16 24 C -0.06 -1.60 6.91 22.82 0.16 -1.44 16 25 C -0.11 -3.85 5.73 30.67 0.18 -3.68 16 26 C 0.14 6.02 6.52 86.36 0.56 6.58 16 27 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.05 2.78 6.52 -2.39 -0.02 2.76 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 2.32 7.11 -2.38 -0.02 2.31 16 33 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 16 35 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.13 3.36 7.54 -2.91 -0.02 3.34 16 38 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.07 2.91 7.93 -2.39 -0.02 2.90 16 Total: -1.00 -75.38 348.62 5.42 -69.96 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.04 Total: 9.27 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.74 Total: 9.07 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.83 Total: -103.17 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.34 Total: -28.57 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.38 5.42 -69.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122715014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.908 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds