Wall clock time and date at job start Sat Apr 11 2020 00:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48494 * 109.47552 * 240.00206 * 3 2 1 5 5 H 1.48505 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47169 * 119.99911 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00066 * 185.00266 * 7 2 1 9 9 C 1.50700 * 120.00035 * 5.00608 * 7 2 1 10 10 H 1.08992 * 109.47034 * 34.84664 * 9 7 2 11 11 C 1.50703 * 109.47145 * 154.84564 * 9 7 2 12 12 O 1.21287 * 120.00252 * 119.99751 * 11 9 7 13 13 N 1.34782 * 119.99813 * 299.72317 * 11 9 7 14 14 C 1.40016 * 119.99703 * 176.18426 * 13 11 9 15 15 C 1.38391 * 120.17419 * 34.41787 * 14 13 11 16 16 C 1.38730 * 120.58147 * 179.74078 * 15 14 13 17 17 C 1.36649 * 120.59110 * 0.55315 * 16 15 14 18 18 C 1.39739 * 119.89844 * 359.72003 * 17 16 15 19 19 C 1.46482 * 133.98634 * 180.02562 * 18 17 16 20 20 C 1.34256 * 107.00971 * 179.97438 * 19 18 17 21 21 N 1.36772 * 109.91385 * 0.02562 * 20 19 18 22 22 H 0.96995 * 125.07004 * 179.97438 * 21 20 19 23 23 C 1.37774 * 109.84770 * 359.97438 * 21 20 19 24 24 C 1.50694 * 109.46818 * 274.84403 * 9 7 2 25 25 C 1.38236 * 120.00241 * 295.65022 * 24 9 7 26 26 C 1.38233 * 119.99742 * 179.78912 * 25 24 9 27 27 C 1.38233 * 120.00187 * 0.44529 * 26 25 24 28 28 C 1.38230 * 120.00297 * 359.80926 * 27 26 25 29 29 C 1.38238 * 119.99727 * 359.97438 * 28 27 26 30 30 H 0.96999 * 119.99874 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99992 * 356.18325 * 13 11 9 32 32 H 1.08002 * 119.71161 * 0.02562 * 15 14 13 33 33 H 1.07999 * 119.70872 * 180.25167 * 16 15 14 34 34 H 1.08004 * 120.05572 * 179.74298 * 17 16 15 35 35 H 1.07997 * 126.49748 * 359.97438 * 19 18 17 36 36 H 1.08003 * 125.04023 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.99702 * 0.02562 * 25 24 9 38 38 H 1.08000 * 119.99866 * 180.27744 * 26 25 24 39 39 H 1.08011 * 119.99783 * 179.83561 * 27 26 25 40 40 H 1.08000 * 120.00559 * 180.02562 * 28 27 26 41 41 H 1.07998 * 120.00055 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0821 9 6 1.2554 -2.4967 -0.1128 10 1 0.3902 -2.3629 -0.7620 11 6 2.1629 -3.5491 -0.6958 12 8 2.4115 -4.5537 -0.0632 13 7 2.6941 -3.3765 -1.9225 14 6 3.5999 -4.3150 -2.4315 15 6 3.4567 -5.6570 -2.1253 16 6 4.3461 -6.5948 -2.6294 17 6 5.3856 -6.2085 -3.4278 18 6 5.5546 -4.8585 -3.7467 19 6 6.5289 -4.1175 -4.5513 20 6 6.1814 -2.8220 -4.4941 21 7 5.0648 -2.6730 -3.7183 22 1 4.6263 -1.8288 -3.5290 23 6 4.6562 -3.9010 -3.2459 24 6 0.7950 -2.9319 1.2545 25 6 1.7237 -3.2519 2.2272 26 6 1.3013 -3.6469 3.4828 27 6 -0.0497 -3.7307 3.7629 28 6 -0.9785 -3.4158 2.7887 29 6 -0.5561 -3.0165 1.5344 30 1 -0.4850 0.8400 -0.0004 31 1 2.4488 -2.6021 -2.4526 32 1 2.6427 -5.9777 -1.4920 33 1 4.2187 -7.6389 -2.3846 34 1 6.0753 -6.9454 -3.8122 35 1 7.3678 -4.5343 -5.0888 36 1 6.7061 -2.0168 -4.9868 37 1 2.7792 -3.1896 2.0073 38 1 2.0269 -3.8925 4.2440 39 1 -0.3797 -4.0419 4.7431 40 1 -2.0340 -3.4810 3.0076 41 1 -1.2817 -2.7709 0.7731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128250153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:09 Heat of formation + Delta-G solvation = 45.929783 kcal Electronic energy + Delta-G solvation = -25940.057357 eV Core-core repulsion = 22363.867737 eV Total energy + Delta-G solvation = -3576.189620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13938 -39.44544 -37.94058 -36.43417 -34.21201 -33.74229 -31.19724 -30.62038 -29.89848 -28.97606 -28.37038 -27.15419 -24.11923 -22.62072 -21.80586 -21.60233 -21.03622 -20.25542 -19.24612 -18.21000 -16.91810 -16.55959 -16.05415 -15.74549 -15.39379 -14.68216 -14.57922 -14.52486 -14.10807 -13.97116 -13.89479 -13.37598 -13.03830 -12.87546 -12.43131 -12.41600 -12.25665 -11.79630 -11.68029 -11.52026 -11.37670 -11.25517 -11.09178 -11.06645 -10.47210 -10.29841 -10.11906 -10.04644 -9.58165 -8.82713 -8.80744 -8.69309 -7.99229 -7.90042 -7.61123 -7.11717 -6.35987 -4.44916 1.37677 1.89032 2.41059 2.42474 2.83518 3.10606 3.18493 3.19128 3.27259 3.48773 3.79019 4.16689 4.25255 4.82431 4.88931 5.01846 5.10821 5.31836 5.39649 5.68486 5.73605 5.74495 5.77786 5.85910 5.94101 6.04571 6.14476 6.21561 6.31524 6.51354 6.59727 6.64551 6.73886 6.80135 6.92771 6.95545 6.98645 7.08373 7.12659 7.40448 7.44271 7.50595 7.53659 7.64770 7.72267 7.90340 7.98887 8.11533 8.57352 8.97490 9.21416 10.71175 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.004736 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.552579 B = 5910.249334 C = 7759.089907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.075 3.925 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.059 3.941 10 H 0.082 0.918 11 C 0.528 3.472 12 O -0.539 6.539 13 N -0.674 5.674 14 C 0.155 3.845 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.104 4.104 18 C -0.094 4.094 19 C -0.213 4.213 20 C 0.050 3.950 21 N -0.591 5.591 22 H 0.417 0.583 23 C 0.071 3.929 24 C -0.013 4.013 25 C -0.084 4.084 26 C -0.137 4.137 27 C -0.148 4.148 28 C -0.135 4.135 29 C -0.105 4.105 30 H 0.268 0.732 31 H 0.410 0.590 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 -5.306 -6.836 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C 0.038 3.962 10 H 0.100 0.900 11 C 0.319 3.681 12 O -0.415 6.415 13 N -0.318 5.318 14 C 0.057 3.943 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.124 4.124 18 C -0.100 4.100 19 C -0.239 4.239 20 C -0.077 4.077 21 N -0.194 5.194 22 H 0.254 0.746 23 C -0.037 4.037 24 C -0.014 4.014 25 C -0.102 4.102 26 C -0.155 4.155 27 C -0.166 4.166 28 C -0.153 4.153 29 C -0.123 4.123 30 H 0.078 0.922 31 H 0.245 0.755 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.103 -5.705 -6.310 10.469 hybrid contribution 0.190 1.974 -0.018 1.983 sum 6.293 -3.732 -6.328 9.673 Atomic orbital electron populations 1.69915 1.05934 1.27626 1.47039 1.24957 0.94912 0.99347 0.93839 0.86540 0.79591 0.82415 0.78864 1.20125 1.20978 1.19962 1.20626 0.93063 0.88318 1.53937 0.91994 1.18049 0.95416 0.91542 0.91190 0.89991 1.21841 0.79737 0.87544 0.79014 1.90591 1.60624 1.30210 1.60108 1.43613 1.44213 1.25632 1.18343 1.16971 0.90057 0.89807 0.97417 1.21038 1.01442 0.89947 1.01358 1.20520 0.95648 0.99151 0.98884 1.20135 0.98811 0.93450 0.99972 1.19021 0.96619 0.92900 1.01424 1.21594 1.02609 0.92256 1.07393 1.21759 0.90079 0.98287 0.97574 1.41759 1.25867 1.07738 1.44019 0.74650 1.18105 0.97125 0.85698 1.02797 1.19894 0.92373 0.92442 0.96704 1.20794 0.99262 0.97701 0.92434 1.20918 0.95339 1.02382 0.96855 1.20793 0.93485 1.03791 0.98507 1.20904 0.98299 1.01904 0.94207 1.20933 0.95665 0.99207 0.96516 0.92203 0.75500 0.83952 0.86159 0.86542 0.83942 0.81588 0.87361 0.87707 0.87802 0.87623 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.17 13.01 55.43 0.72 -21.45 16 2 C 0.08 1.84 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 4 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -12.60 7.88 -34.44 -0.27 -12.87 16 8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.06 1.35 2.21 -94.08 -0.21 1.14 16 10 H 0.08 1.96 7.43 -51.93 -0.39 1.57 16 11 C 0.53 11.31 6.78 -10.98 -0.07 11.23 16 12 O -0.54 -12.45 12.18 5.55 0.07 -12.39 16 13 N -0.67 -12.39 5.23 -9.76 -0.05 -12.45 16 14 C 0.15 2.74 6.33 -83.53 -0.53 2.21 16 15 C -0.12 -2.03 8.69 -39.34 -0.34 -2.37 16 16 C -0.12 -1.82 9.97 -39.97 -0.40 -2.22 16 17 C -0.10 -1.47 10.05 -39.60 -0.40 -1.87 16 18 C -0.09 -1.42 6.37 -105.16 -0.67 -2.09 16 19 C -0.21 -2.62 11.08 -37.67 -0.42 -3.04 16 20 C 0.05 0.56 11.82 -16.75 -0.20 0.37 16 21 N -0.59 -7.81 6.07 -10.55 -0.06 -7.88 16 22 H 0.42 4.87 8.96 -40.82 -0.37 4.51 16 23 C 0.07 1.14 7.20 -83.80 -0.60 0.54 16 24 C -0.01 -0.30 4.45 -104.63 -0.47 -0.77 16 25 C -0.08 -1.89 8.02 -39.58 -0.32 -2.21 16 26 C -0.14 -2.74 10.05 -39.59 -0.40 -3.14 16 27 C -0.15 -2.78 10.05 -39.59 -0.40 -3.18 16 28 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 29 C -0.10 -2.30 9.67 -39.58 -0.38 -2.68 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 31 H 0.41 6.87 8.77 -40.82 -0.36 6.51 16 32 H 0.14 2.70 6.17 -52.49 -0.32 2.37 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.17 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.11 2.51 7.69 -52.49 -0.40 2.11 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -28.98 352.96 -10.35 -39.33 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -4.76 Total: 17.46 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -6.56 Total: -22.22 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.61 Total: -41.77 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.98 -10.35 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128250153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.262 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds