Wall clock time and date at job start Sat Apr 11 2020 00:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48494 * 109.47552 * 240.00206 * 3 2 1 5 5 H 1.48505 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47169 * 119.99911 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00066 * 185.00266 * 7 2 1 9 9 C 1.50700 * 120.00035 * 5.00608 * 7 2 1 10 10 H 1.08992 * 109.47034 * 34.84664 * 9 7 2 11 11 C 1.50703 * 109.47145 * 154.84564 * 9 7 2 12 12 O 1.21287 * 120.00252 * 119.99751 * 11 9 7 13 13 N 1.34782 * 119.99813 * 299.72317 * 11 9 7 14 14 C 1.40016 * 119.99703 * 176.18426 * 13 11 9 15 15 C 1.38391 * 120.17419 * 34.41787 * 14 13 11 16 16 C 1.38730 * 120.58147 * 179.74078 * 15 14 13 17 17 C 1.36649 * 120.59110 * 0.55315 * 16 15 14 18 18 C 1.39739 * 119.89844 * 359.72003 * 17 16 15 19 19 C 1.46482 * 133.98634 * 180.02562 * 18 17 16 20 20 C 1.34256 * 107.00971 * 179.97438 * 19 18 17 21 21 N 1.36772 * 109.91385 * 0.02562 * 20 19 18 22 22 H 0.96995 * 125.07004 * 179.97438 * 21 20 19 23 23 C 1.37774 * 109.84770 * 359.97438 * 21 20 19 24 24 C 1.50694 * 109.46818 * 274.84403 * 9 7 2 25 25 C 1.38236 * 120.00241 * 295.65022 * 24 9 7 26 26 C 1.38233 * 119.99742 * 179.78912 * 25 24 9 27 27 C 1.38233 * 120.00187 * 0.44529 * 26 25 24 28 28 C 1.38230 * 120.00297 * 359.80926 * 27 26 25 29 29 C 1.38238 * 119.99727 * 359.97438 * 28 27 26 30 30 H 0.96999 * 119.99874 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99992 * 356.18325 * 13 11 9 32 32 H 1.08002 * 119.71161 * 0.02562 * 15 14 13 33 33 H 1.07999 * 119.70872 * 180.25167 * 16 15 14 34 34 H 1.08004 * 120.05572 * 179.74298 * 17 16 15 35 35 H 1.07997 * 126.49748 * 359.97438 * 19 18 17 36 36 H 1.08003 * 125.04023 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.99702 * 0.02562 * 25 24 9 38 38 H 1.08000 * 119.99866 * 180.27744 * 26 25 24 39 39 H 1.08011 * 119.99783 * 179.83561 * 27 26 25 40 40 H 1.08000 * 120.00559 * 180.02562 * 28 27 26 41 41 H 1.07998 * 120.00055 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0821 9 6 1.2554 -2.4967 -0.1128 10 1 0.3902 -2.3629 -0.7620 11 6 2.1629 -3.5491 -0.6958 12 8 2.4115 -4.5537 -0.0632 13 7 2.6941 -3.3765 -1.9225 14 6 3.5999 -4.3150 -2.4315 15 6 3.4567 -5.6570 -2.1253 16 6 4.3461 -6.5948 -2.6294 17 6 5.3856 -6.2085 -3.4278 18 6 5.5546 -4.8585 -3.7467 19 6 6.5289 -4.1175 -4.5513 20 6 6.1814 -2.8220 -4.4941 21 7 5.0648 -2.6730 -3.7183 22 1 4.6263 -1.8288 -3.5290 23 6 4.6562 -3.9010 -3.2459 24 6 0.7950 -2.9319 1.2545 25 6 1.7237 -3.2519 2.2272 26 6 1.3013 -3.6469 3.4828 27 6 -0.0497 -3.7307 3.7629 28 6 -0.9785 -3.4158 2.7887 29 6 -0.5561 -3.0165 1.5344 30 1 -0.4850 0.8400 -0.0004 31 1 2.4488 -2.6021 -2.4526 32 1 2.6427 -5.9777 -1.4920 33 1 4.2187 -7.6389 -2.3846 34 1 6.0753 -6.9454 -3.8122 35 1 7.3678 -4.5343 -5.0888 36 1 6.7061 -2.0168 -4.9868 37 1 2.7792 -3.1896 2.0073 38 1 2.0269 -3.8925 4.2440 39 1 -0.3797 -4.0419 4.7431 40 1 -2.0340 -3.4810 3.0076 41 1 -1.2817 -2.7709 0.7731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128250153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:09 Heat of formation + Delta-G solvation = 31.130990 kcal Electronic energy + Delta-G solvation = -25940.699081 eV Core-core repulsion = 22363.867737 eV Total energy + Delta-G solvation = -3576.831343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.28830 -41.00921 -39.50200 -37.68789 -35.71308 -35.49660 -32.94111 -31.80376 -31.52330 -30.18427 -29.60383 -28.73786 -25.91520 -23.96637 -23.23071 -23.00985 -22.38720 -21.49093 -20.75096 -19.45528 -18.74771 -17.88472 -17.60984 -17.30652 -16.59545 -16.38855 -16.03053 -15.90477 -15.53486 -15.43893 -15.18128 -14.73534 -14.68822 -14.06137 -13.97517 -13.84019 -13.53356 -13.50340 -13.34489 -12.89203 -12.78924 -12.74603 -12.51867 -12.40578 -12.16601 -12.00037 -11.69873 -11.46527 -11.34099 -10.68039 -10.43509 -9.99329 -9.54084 -9.27702 -9.13203 -8.32168 -8.23266 -6.38450 0.19195 0.69583 0.77143 0.79831 1.39026 1.42001 1.48480 1.70748 1.96540 2.20861 2.36951 2.38825 3.01205 3.04547 3.26050 3.89437 4.10739 4.14248 4.19567 4.27010 4.29089 4.41203 4.45795 4.50505 4.58799 4.75276 4.83173 4.86216 4.96109 5.03829 5.05773 5.10449 5.35557 5.41791 5.46419 5.56004 5.60439 5.73868 5.79033 5.81805 5.86121 5.90143 5.92445 6.19016 6.29090 6.38070 6.53472 6.66514 6.68602 7.28007 7.35818 8.82439 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.004736 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.552579 B = 5910.249334 C = 7759.089907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.037 3.963 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.062 3.938 10 H 0.062 0.938 11 C 0.527 3.473 12 O -0.562 6.562 13 N -0.663 5.663 14 C 0.126 3.874 15 C -0.135 4.135 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.111 4.111 19 C -0.222 4.222 20 C 0.062 3.938 21 N -0.593 5.593 22 H 0.421 0.579 23 C 0.051 3.949 24 C -0.037 4.037 25 C -0.108 4.108 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.133 4.133 29 C -0.127 4.127 30 H 0.268 0.732 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.211 0.789 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -5.198 -7.203 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.167 4.167 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.041 3.959 10 H 0.080 0.920 11 C 0.317 3.683 12 O -0.440 6.440 13 N -0.307 5.307 14 C 0.030 3.970 15 C -0.157 4.157 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.247 4.247 20 C -0.065 4.065 21 N -0.196 5.196 22 H 0.259 0.741 23 C -0.058 4.058 24 C -0.038 4.038 25 C -0.126 4.126 26 C -0.156 4.156 27 C -0.160 4.160 28 C -0.151 4.151 29 C -0.145 4.145 30 H 0.077 0.923 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.799 -5.597 -6.721 11.718 hybrid contribution -0.283 1.877 0.061 1.900 sum 7.516 -3.719 -6.660 10.709 Atomic orbital electron populations 1.70022 1.07019 1.28098 1.47980 1.25586 0.95559 1.01955 0.93566 0.85668 0.78477 0.78907 0.78983 1.18311 1.20869 1.20846 1.20672 0.92550 0.89171 1.53760 0.93009 1.17926 0.94845 0.91746 0.91358 0.91973 1.21587 0.79853 0.86986 0.79840 1.90562 1.61617 1.30816 1.61012 1.43378 1.44004 1.25937 1.17364 1.17148 0.91038 0.89733 0.99082 1.21009 1.01887 0.90806 1.02013 1.20748 0.95448 0.99748 0.99024 1.20525 0.98419 0.94000 0.98537 1.19552 0.97125 0.93290 1.01692 1.21990 1.02970 0.92323 1.07369 1.22531 0.88653 0.99403 0.95863 1.41927 1.26479 1.07139 1.44044 0.74106 1.18187 0.97086 0.87428 1.03077 1.19999 0.93272 0.93747 0.96800 1.20787 0.98267 0.99674 0.93909 1.21278 0.96911 1.01191 0.96268 1.21246 0.92614 1.02107 1.00003 1.21299 1.00332 1.00317 0.93147 1.21042 0.95072 1.00571 0.97855 0.92314 0.74974 0.86421 0.83923 0.83268 0.81063 0.77273 0.89242 0.84960 0.83638 0.84411 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.90 13.01 21.45 0.28 -46.62 16 2 C 0.04 1.83 5.45 84.65 0.46 2.29 16 3 Si 0.95 39.85 29.54 68.60 2.03 41.88 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.52 -26.34 7.88 25.60 0.20 -26.14 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.06 3.04 2.21 -13.03 -0.03 3.01 16 10 H 0.06 3.20 7.43 -2.39 -0.02 3.18 16 11 C 0.53 24.15 6.78 87.66 0.59 24.74 16 12 O -0.56 -27.75 12.18 -3.05 -0.04 -27.79 16 13 N -0.66 -25.97 5.23 -303.19 -1.59 -27.56 16 14 C 0.13 4.67 6.33 38.21 0.24 4.92 16 15 C -0.14 -4.99 8.69 22.42 0.19 -4.79 16 16 C -0.13 -3.86 9.97 22.02 0.22 -3.64 16 17 C -0.10 -2.55 10.05 22.26 0.22 -2.32 16 18 C -0.11 -3.17 6.37 -20.21 -0.13 -3.30 16 19 C -0.22 -4.76 11.08 23.51 0.26 -4.50 16 20 C 0.06 1.19 11.82 83.01 0.98 2.17 16 21 N -0.59 -14.92 6.07 -187.28 -1.14 -16.06 16 22 H 0.42 9.52 8.96 -92.71 -0.83 8.69 16 23 C 0.05 1.63 7.20 39.11 0.28 1.92 16 24 C -0.04 -1.80 4.45 -19.87 -0.09 -1.89 16 25 C -0.11 -5.04 8.02 22.27 0.18 -4.86 16 26 C -0.14 -5.43 10.05 22.27 0.22 -5.21 16 27 C -0.14 -5.03 10.05 22.27 0.22 -4.80 16 28 C -0.13 -5.04 10.05 22.27 0.22 -4.82 16 29 C -0.13 -5.72 9.67 22.27 0.22 -5.51 16 30 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 31 H 0.41 14.83 8.77 -92.71 -0.81 14.01 16 32 H 0.12 4.84 6.17 -2.91 -0.02 4.83 16 33 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 35 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.09 4.39 7.69 -2.91 -0.02 4.37 16 38 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.15 3.94 8.06 -2.90 -0.02 3.92 16 40 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.11 4.80 7.95 -2.91 -0.02 4.78 16 Total: -1.00 -65.54 352.96 3.46 -62.08 By element: Atomic # 1 Polarization: 47.37 SS G_CDS: -0.56 Total: 46.81 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 4.48 Total: -32.74 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -2.45 Total: -90.24 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.04 Total: -27.79 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -65.54 3.46 -62.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128250153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.207 kcal (2) G-P(sol) polarization free energy of solvation -65.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds