Wall clock time and date at job start Sat Apr 11 2020 00:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47453 * 270.00419 * 3 2 1 5 5 H 1.48507 * 109.46751 * 30.00462 * 3 2 1 6 6 H 1.48498 * 109.46991 * 149.99838 * 3 2 1 7 7 C 1.37883 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99715 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99935 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47057 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00212 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00197 * 180.02562 * 10 9 7 13 13 C 1.40136 * 120.00340 * 184.60726 * 12 10 9 14 14 C 1.39418 * 119.88641 * 144.90137 * 13 12 10 15 15 C 1.37666 * 120.63312 * 179.97438 * 14 13 12 16 16 C 1.39121 * 120.04363 * 0.07214 * 15 14 13 17 17 N 1.37926 * 133.09764 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.11427 * 359.97096 * 17 16 15 19 19 C 1.37556 * 109.78093 * 179.97438 * 17 16 15 20 20 C 1.47887 * 125.21736 * 179.73287 * 19 17 16 21 21 C 1.39555 * 120.13965 * 179.74594 * 20 19 17 22 22 C 1.37966 * 119.85320 * 179.78715 * 21 20 19 23 23 C 1.38361 * 120.14006 * 0.46684 * 22 21 20 24 24 C 1.38349 * 120.28762 * 359.78383 * 23 22 21 25 25 C 1.37964 * 120.14559 * 359.97438 * 24 23 22 26 26 C 1.35608 * 109.56596 * 359.97438 * 19 17 16 27 27 C 1.40754 * 119.52101 * 359.92864 * 16 15 14 28 28 C 1.38163 * 119.87684 * 324.87395 * 13 12 10 29 29 H 0.97006 * 119.99956 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46945 * 60.00161 * 9 7 2 31 31 H 1.08999 * 109.47546 * 300.00179 * 9 7 2 32 32 H 0.97003 * 120.00072 * 4.60728 * 12 10 9 33 33 H 1.08009 * 119.68138 * 0.02562 * 14 13 12 34 34 H 1.07997 * 119.97467 * 180.02562 * 15 14 13 35 35 H 1.07991 * 120.07298 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.92899 * 180.22747 * 22 21 20 37 37 H 1.07995 * 119.85491 * 179.75995 * 23 22 21 38 38 H 1.08000 * 119.92720 * 179.97438 * 24 23 22 39 39 H 1.08004 * 120.07178 * 180.02562 * 25 24 23 40 40 H 1.08001 * 126.51754 * 179.97438 * 26 19 17 41 41 H 1.07994 * 120.20145 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 8 3.2255 -3.5369 -0.0010 12 7 5.3388 -2.8613 -0.0009 13 6 5.8066 -4.1786 -0.0983 14 6 6.9809 -4.4487 -0.7996 15 6 7.4547 -5.7370 -0.9045 16 6 6.7603 -6.7852 -0.3091 17 7 6.9808 -8.1452 -0.2441 18 1 7.7310 -8.6087 -0.6482 19 6 5.9770 -8.7455 0.4798 20 6 5.8741 -10.1948 0.7558 21 6 4.8094 -10.6907 1.5096 22 6 4.7168 -12.0443 1.7597 23 6 5.6818 -12.9083 1.2732 24 6 6.7425 -12.4224 0.5297 25 6 6.8441 -11.0715 0.2682 26 6 5.0934 -7.8053 0.8972 27 6 5.5743 -6.5172 0.3999 28 6 5.1027 -5.2051 0.5016 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 5.9687 -2.1267 0.0665 33 1 7.5245 -3.6394 -1.2644 34 1 8.3657 -5.9341 -1.4500 35 1 4.0576 -10.0168 1.8929 36 1 3.8915 -12.4298 2.3398 37 1 5.6068 -13.9666 1.4750 38 1 7.4927 -13.1020 0.1531 39 1 7.6724 -10.6935 -0.3127 40 1 4.2032 -7.9757 1.4846 41 1 4.1932 -4.9952 1.0447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:12 Heat of formation + Delta-G solvation = 47.697133 kcal Electronic energy + Delta-G solvation = -24323.202042 eV Core-core repulsion = 20747.089061 eV Total energy + Delta-G solvation = -3576.112982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31146 -39.57247 -38.96873 -36.64731 -33.68886 -32.88256 -32.19571 -31.59806 -31.18372 -29.92799 -28.26915 -27.74399 -24.10417 -23.37899 -22.87915 -22.00989 -21.07414 -20.31654 -19.59917 -18.23625 -17.21300 -16.87992 -16.82729 -15.98759 -15.67239 -15.11809 -14.80487 -14.62154 -14.48191 -14.24739 -13.97391 -13.81925 -13.51991 -13.27437 -13.20867 -13.11059 -12.73719 -12.52577 -12.18959 -11.95740 -11.61658 -11.45770 -11.35219 -10.96453 -10.82424 -10.60084 -10.04896 -10.00263 -9.43758 -9.31960 -9.28723 -9.18961 -8.77778 -8.59183 -7.61184 -7.31574 -6.04163 -4.04360 0.49587 1.04555 1.46264 1.69728 2.71218 2.93754 3.25764 3.31621 3.34554 3.46399 3.61161 3.68654 4.09350 4.31038 4.39566 4.48795 4.59362 4.76935 4.82050 5.05150 5.08371 5.16010 5.26183 5.27725 5.40875 5.49406 5.59729 5.62371 5.66457 5.88291 6.01091 6.03819 6.07306 6.16068 6.24352 6.33356 6.54443 6.58951 6.64633 6.70127 6.83210 6.87392 6.94754 7.38300 7.45977 7.51745 8.03015 8.53394 8.99107 9.16033 9.53460 11.08696 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.002307 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.982595 B =12131.910674 C =13173.027372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.093 0.907 9 C -0.028 4.028 10 C 0.519 3.481 11 O -0.511 6.511 12 N -0.690 5.690 13 C 0.128 3.872 14 C -0.116 4.116 15 C -0.120 4.120 16 C 0.087 3.913 17 N -0.594 5.594 18 H 0.410 0.590 19 C 0.106 3.894 20 C -0.020 4.020 21 C -0.099 4.099 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.169 4.169 27 C -0.089 4.089 28 C -0.074 4.074 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.405 0.595 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.149 0.851 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.234 -21.380 1.319 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.111 0.889 9 C -0.067 4.067 10 C 0.309 3.691 11 O -0.384 6.384 12 N -0.336 5.336 13 C 0.032 3.968 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.019 4.019 17 N -0.199 5.199 18 H 0.247 0.753 19 C 0.000 4.000 20 C -0.021 4.021 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.194 4.194 27 C -0.094 4.094 28 C -0.095 4.095 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.240 0.760 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.166 0.834 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.503 -21.922 1.261 28.715 hybrid contribution 1.148 1.130 -0.335 1.645 sum 19.651 -20.792 0.925 28.624 Atomic orbital electron populations 1.69893 1.06174 1.26852 1.50483 1.24977 0.94816 0.98743 0.94754 0.86882 0.80311 0.84063 0.78561 1.20136 1.21109 1.19088 1.20977 0.87520 0.95788 1.50939 0.88882 1.19698 0.99811 0.88477 0.98761 1.21635 0.79973 0.93864 0.73594 1.90586 1.54860 1.46596 1.46368 1.43968 1.08744 1.05850 1.75073 1.17520 0.95203 0.85450 0.98602 1.20610 0.97091 0.96102 0.99885 1.19678 1.00653 0.90290 1.03516 1.18184 0.97690 0.83334 1.02737 1.41630 1.24023 1.05376 1.48826 0.75301 1.18504 0.91227 0.91070 0.99238 1.18181 0.95979 0.89210 0.98680 1.21211 0.97268 0.95757 0.97550 1.21129 0.99077 0.93084 0.99770 1.21246 0.94701 0.99909 0.98172 1.21031 0.98453 0.95022 0.98809 1.21085 0.98503 0.93587 1.00597 1.21746 1.01124 0.89861 1.06692 1.18978 0.95412 0.93363 1.01668 1.20775 1.00606 0.89497 0.98601 0.92557 0.93319 0.93740 0.76000 0.85424 0.86170 0.85007 0.85450 0.85908 0.85849 0.86541 0.83363 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 7 C -0.51 -14.92 9.48 -34.44 -0.33 -15.24 16 8 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 9 C -0.03 -0.64 4.53 -29.04 -0.13 -0.77 16 10 C 0.52 11.33 7.66 -10.99 -0.08 11.24 16 11 O -0.51 -13.06 12.89 5.54 0.07 -12.99 16 12 N -0.69 -11.55 5.34 -9.85 -0.05 -11.60 16 13 C 0.13 2.09 6.30 -83.65 -0.53 1.56 16 14 C -0.12 -1.51 9.93 -39.35 -0.39 -1.90 16 15 C -0.12 -1.45 10.06 -39.46 -0.40 -1.85 16 16 C 0.09 1.18 7.26 -83.84 -0.61 0.57 16 17 N -0.59 -6.57 5.99 -7.26 -0.04 -6.62 16 18 H 0.41 3.21 7.95 -40.82 -0.32 2.88 16 19 C 0.11 1.27 6.87 -82.29 -0.57 0.71 16 20 C -0.02 -0.20 5.87 -104.97 -0.62 -0.82 16 21 C -0.10 -0.92 9.54 -39.19 -0.37 -1.29 16 22 C -0.11 -0.87 10.03 -39.64 -0.40 -1.27 16 23 C -0.12 -0.86 10.04 -39.50 -0.40 -1.26 16 24 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 25 C -0.12 -1.00 9.69 -39.19 -0.38 -1.38 16 26 C -0.17 -2.34 10.41 -37.32 -0.39 -2.73 16 27 C -0.09 -1.42 6.35 -105.16 -0.67 -2.08 16 28 C -0.07 -1.31 8.75 -39.02 -0.34 -1.65 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 1.06 7.20 -51.93 -0.37 0.68 16 31 H 0.04 0.96 7.57 -51.93 -0.39 0.56 16 32 H 0.41 5.25 8.82 -40.82 -0.36 4.89 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.11 6.91 -52.49 -0.36 0.74 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.12 0.75 7.07 -52.48 -0.37 0.38 16 40 H 0.15 1.82 7.18 -52.49 -0.38 1.44 16 41 H 0.14 2.90 6.21 -52.49 -0.33 2.57 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -35.55 349.17 -10.28 -45.83 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.54 Total: 8.53 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -7.09 Total: -17.49 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.68 Total: -45.17 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.55 -10.28 -45.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds