Wall clock time and date at job start Sat Apr 11 2020 00:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47453 * 270.00419 * 3 2 1 5 5 H 1.48507 * 109.46751 * 30.00462 * 3 2 1 6 6 H 1.48498 * 109.46991 * 149.99838 * 3 2 1 7 7 C 1.37883 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99715 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99935 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47057 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00212 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00197 * 180.02562 * 10 9 7 13 13 C 1.40136 * 120.00340 * 184.60726 * 12 10 9 14 14 C 1.39418 * 119.88641 * 144.90137 * 13 12 10 15 15 C 1.37666 * 120.63312 * 179.97438 * 14 13 12 16 16 C 1.39121 * 120.04363 * 0.07214 * 15 14 13 17 17 N 1.37926 * 133.09764 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.11427 * 359.97096 * 17 16 15 19 19 C 1.37556 * 109.78093 * 179.97438 * 17 16 15 20 20 C 1.47887 * 125.21736 * 179.73287 * 19 17 16 21 21 C 1.39555 * 120.13965 * 179.74594 * 20 19 17 22 22 C 1.37966 * 119.85320 * 179.78715 * 21 20 19 23 23 C 1.38361 * 120.14006 * 0.46684 * 22 21 20 24 24 C 1.38349 * 120.28762 * 359.78383 * 23 22 21 25 25 C 1.37964 * 120.14559 * 359.97438 * 24 23 22 26 26 C 1.35608 * 109.56596 * 359.97438 * 19 17 16 27 27 C 1.40754 * 119.52101 * 359.92864 * 16 15 14 28 28 C 1.38163 * 119.87684 * 324.87395 * 13 12 10 29 29 H 0.97006 * 119.99956 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46945 * 60.00161 * 9 7 2 31 31 H 1.08999 * 109.47546 * 300.00179 * 9 7 2 32 32 H 0.97003 * 120.00072 * 4.60728 * 12 10 9 33 33 H 1.08009 * 119.68138 * 0.02562 * 14 13 12 34 34 H 1.07997 * 119.97467 * 180.02562 * 15 14 13 35 35 H 1.07991 * 120.07298 * 0.02562 * 21 20 19 36 36 H 1.07998 * 119.92899 * 180.22747 * 22 21 20 37 37 H 1.07995 * 119.85491 * 179.75995 * 23 22 21 38 38 H 1.08000 * 119.92720 * 179.97438 * 24 23 22 39 39 H 1.08004 * 120.07178 * 180.02562 * 25 24 23 40 40 H 1.08001 * 126.51754 * 179.97438 * 26 19 17 41 41 H 1.07994 * 120.20145 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 8 3.2255 -3.5369 -0.0010 12 7 5.3388 -2.8613 -0.0009 13 6 5.8066 -4.1786 -0.0983 14 6 6.9809 -4.4487 -0.7996 15 6 7.4547 -5.7370 -0.9045 16 6 6.7603 -6.7852 -0.3091 17 7 6.9808 -8.1452 -0.2441 18 1 7.7310 -8.6087 -0.6482 19 6 5.9770 -8.7455 0.4798 20 6 5.8741 -10.1948 0.7558 21 6 4.8094 -10.6907 1.5096 22 6 4.7168 -12.0443 1.7597 23 6 5.6818 -12.9083 1.2732 24 6 6.7425 -12.4224 0.5297 25 6 6.8441 -11.0715 0.2682 26 6 5.0934 -7.8053 0.8972 27 6 5.5743 -6.5172 0.3999 28 6 5.1027 -5.2051 0.5016 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 5.9687 -2.1267 0.0665 33 1 7.5245 -3.6394 -1.2644 34 1 8.3657 -5.9341 -1.4500 35 1 4.0576 -10.0168 1.8929 36 1 3.8915 -12.4298 2.3398 37 1 5.6068 -13.9666 1.4750 38 1 7.4927 -13.1020 0.1531 39 1 7.6724 -10.6935 -0.3127 40 1 4.2032 -7.9757 1.4846 41 1 4.1932 -4.9952 1.0447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:11 Heat of formation + Delta-G solvation = 24.572762 kcal Electronic energy + Delta-G solvation = -24324.204790 eV Core-core repulsion = 20747.089061 eV Total energy + Delta-G solvation = -3577.115729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.33677 -40.96093 -39.80408 -37.90814 -35.06481 -35.02675 -33.17736 -32.43648 -31.96785 -31.70484 -29.42462 -28.85917 -25.66913 -24.57300 -23.59916 -23.14143 -22.14103 -21.50431 -20.91686 -19.25360 -19.02402 -18.29327 -17.74536 -17.35044 -16.75662 -16.35878 -16.17560 -15.81582 -15.57108 -15.48041 -15.05638 -14.99063 -14.65370 -14.53262 -14.19546 -14.10561 -13.87178 -13.72577 -13.62088 -13.42313 -12.88135 -12.77066 -12.38213 -12.23641 -12.08281 -11.95432 -11.83730 -11.54183 -11.10046 -10.78237 -10.74504 -10.44978 -10.04547 -9.92706 -8.61872 -8.47703 -8.25689 -6.34824 -0.33177 0.43849 0.45355 0.58455 1.40858 1.45494 1.55766 1.78993 1.82600 2.00527 2.29021 2.39475 2.90533 2.94600 3.07739 3.47100 3.77751 3.95353 4.02340 4.09523 4.18292 4.26702 4.28646 4.44106 4.45865 4.51321 4.54143 4.65901 4.71071 4.92895 4.94053 5.04243 5.04824 5.10303 5.21175 5.36625 5.42176 5.49171 5.53102 5.54128 5.56622 5.71596 5.83598 6.00053 6.17007 6.25357 6.62552 6.65794 6.83588 7.24974 7.43943 8.91959 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.002307 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.982595 B =12131.910674 C =13173.027372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.226 1.226 7 C -0.536 4.536 8 H 0.027 0.973 9 C -0.024 4.024 10 C 0.516 3.484 11 O -0.565 6.565 12 N -0.665 5.665 13 C 0.108 3.892 14 C -0.112 4.112 15 C -0.101 4.101 16 C 0.082 3.918 17 N -0.577 5.577 18 H 0.429 0.571 19 C 0.131 3.869 20 C -0.048 4.048 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.215 4.215 27 C -0.116 4.116 28 C -0.110 4.110 29 H 0.268 0.732 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.427 0.573 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.367 -21.917 0.141 32.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.149 1.149 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.064 4.064 10 C 0.307 3.693 11 O -0.442 6.442 12 N -0.313 5.313 13 C 0.014 3.986 14 C -0.133 4.133 15 C -0.122 4.122 16 C -0.026 4.026 17 N -0.183 5.183 18 H 0.270 0.730 19 C 0.022 3.978 20 C -0.049 4.049 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.240 4.240 27 C -0.121 4.121 28 C -0.132 4.132 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.266 0.734 33 H 0.184 0.816 34 H 0.184 0.816 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 23.734 -22.483 0.077 32.693 hybrid contribution -0.482 0.960 0.064 1.076 sum 23.252 -21.524 0.141 31.685 Atomic orbital electron populations 1.70101 1.08883 1.28444 1.52011 1.26186 0.95835 1.04048 0.93638 0.85499 0.79871 0.76550 0.79643 1.18574 1.21292 1.14893 1.21157 0.90969 0.93712 1.51538 0.95476 1.19611 0.95805 0.89961 1.01011 1.21469 0.81444 0.92938 0.73493 1.90593 1.56770 1.47786 1.49030 1.43516 1.07177 1.07154 1.73407 1.17772 0.96622 0.84409 0.99842 1.20931 0.95551 0.97805 0.99027 1.20181 1.01206 0.89091 1.01716 1.18395 0.97001 0.84680 1.02513 1.41573 1.24145 1.04576 1.47975 0.73005 1.18722 0.90116 0.91798 0.97132 1.18249 0.97606 0.88292 1.00791 1.21366 0.97300 0.96761 0.97884 1.21402 1.00069 0.92434 1.00001 1.21662 0.93882 1.01183 0.96768 1.21419 0.98999 0.94923 0.98260 1.21370 0.98270 0.93978 1.00081 1.21853 1.02676 0.90253 1.09253 1.19177 0.97029 0.93057 1.02819 1.20583 1.00287 0.91529 1.00770 0.92308 0.90673 0.90715 0.73450 0.81624 0.81605 0.85679 0.83735 0.83231 0.83005 0.84517 0.83852 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.01 13.96 21.45 0.30 -61.71 16 2 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 3 Si 0.96 42.14 27.47 68.60 1.88 44.03 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 7 C -0.54 -32.67 9.48 25.60 0.24 -32.43 16 8 H 0.03 1.95 7.00 -2.91 -0.02 1.93 16 9 C -0.02 -1.11 4.53 29.10 0.13 -0.98 16 10 C 0.52 23.41 7.66 87.66 0.67 24.08 16 11 O -0.56 -31.58 12.89 -3.08 -0.04 -31.62 16 12 N -0.66 -22.07 5.34 -303.45 -1.62 -23.69 16 13 C 0.11 3.58 6.30 38.08 0.24 3.82 16 14 C -0.11 -2.63 9.93 22.42 0.22 -2.41 16 15 C -0.10 -2.10 10.06 22.35 0.22 -1.88 16 16 C 0.08 2.11 7.26 39.01 0.28 2.40 16 17 N -0.58 -11.83 5.99 -176.87 -1.06 -12.89 16 18 H 0.43 5.33 7.95 -92.71 -0.74 4.59 16 19 C 0.13 3.16 6.87 40.19 0.28 3.44 16 20 C -0.05 -0.96 5.87 -20.09 -0.12 -1.08 16 21 C -0.11 -2.17 9.54 22.52 0.21 -1.95 16 22 C -0.12 -1.73 10.03 22.23 0.22 -1.51 16 23 C -0.12 -1.33 10.04 22.33 0.22 -1.10 16 24 C -0.12 -1.32 10.03 22.23 0.22 -1.10 16 25 C -0.12 -1.69 9.69 22.52 0.22 -1.48 16 26 C -0.22 -6.56 10.41 23.73 0.25 -6.31 16 27 C -0.12 -3.91 6.35 -20.21 -0.13 -4.04 16 28 C -0.11 -4.28 8.75 22.63 0.20 -4.08 16 29 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 30 H 0.08 3.08 7.20 -2.39 -0.02 3.06 16 31 H 0.08 3.02 7.57 -2.39 -0.02 3.00 16 32 H 0.43 10.04 8.82 -92.71 -0.82 9.22 16 33 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.13 2.40 6.91 -2.92 -0.02 2.38 16 36 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 39 H 0.14 1.29 7.07 -2.91 -0.02 1.27 16 40 H 0.14 4.20 7.18 -2.91 -0.02 4.18 16 41 H 0.10 4.70 6.21 -2.91 -0.02 4.68 16 Total: -1.00 -87.65 349.17 3.01 -84.64 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.51 Total: 27.45 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 4.06 Total: -26.21 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -2.38 Total: -98.29 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.04 Total: -31.62 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Total: -87.65 3.01 -84.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.210 kcal (2) G-P(sol) polarization free energy of solvation -87.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds