Wall clock time and date at job start Sat Apr 11 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47135 * 270.00291 * 3 2 1 5 5 H 1.48502 * 109.47119 * 30.00185 * 3 2 1 6 6 H 1.48500 * 109.47295 * 149.99907 * 3 2 1 7 7 C 1.37877 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00283 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00147 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47411 * 180.02562 * 9 7 2 11 11 O 1.21277 * 119.99671 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00076 * 180.02562 * 10 9 7 13 13 C 1.46497 * 119.99938 * 180.02562 * 12 10 9 14 14 H 1.08996 * 110.64432 * 31.85373 * 13 12 10 15 15 C 1.55160 * 110.72072 * 154.99672 * 13 12 10 16 16 C 1.54910 * 101.58218 * 154.04045 * 15 13 12 17 17 N 1.47422 * 104.83394 * 322.98992 * 16 15 13 18 18 C 1.34775 * 125.65084 * 204.08889 * 17 16 15 19 19 O 1.21567 * 120.00047 * 184.11022 * 18 17 16 20 20 C 1.47698 * 119.99832 * 3.83761 * 18 17 16 21 21 C 1.39660 * 120.16219 * 324.37397 * 20 18 17 22 22 C 1.37854 * 119.87319 * 179.97438 * 21 20 18 23 23 C 1.38457 * 120.22198 * 0.02562 * 22 21 20 24 24 C 1.38203 * 120.33839 * 359.97438 * 23 22 21 25 25 C 1.38315 * 120.11657 * 359.74446 * 24 23 22 26 26 F 1.35105 * 120.11250 * 180.25518 * 25 24 23 27 27 C 1.47030 * 108.70125 * 24.35587 * 17 16 15 28 28 H 0.97002 * 119.99834 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46491 * 60.00597 * 9 7 2 30 30 H 1.09001 * 109.47576 * 300.00955 * 9 7 2 31 31 H 0.96999 * 120.00043 * 359.97438 * 12 10 9 32 32 H 1.08996 * 111.00449 * 35.96737 * 15 13 12 33 33 H 1.09001 * 111.03513 * 272.12888 * 15 13 12 34 34 H 1.09000 * 110.36830 * 204.15284 * 16 15 13 35 35 H 1.09000 * 110.36702 * 81.83102 * 16 15 13 36 36 H 1.08001 * 120.06448 * 359.95245 * 21 20 18 37 37 H 1.07998 * 119.88868 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.83290 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.94486 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.87957 * 118.13376 * 27 17 16 41 41 H 1.08999 * 109.88226 * 239.29251 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 8 3.2257 -3.5367 0.0001 12 7 5.3389 -2.8612 0.0001 13 6 5.8272 -4.2424 -0.0003 14 1 5.1385 -4.8933 -0.5389 15 6 7.2503 -4.3213 -0.6136 16 6 7.8130 -5.5929 0.0692 17 7 7.2732 -5.5553 1.4405 18 6 7.8165 -6.1602 2.5154 19 8 7.2440 -6.1239 3.5872 20 6 9.1044 -6.8721 2.3897 21 6 9.4104 -7.5676 1.2179 22 6 10.6145 -8.2296 1.1068 23 6 11.5210 -8.2076 2.1531 24 6 11.2275 -7.5222 3.3168 25 6 10.0260 -6.8483 3.4410 26 9 9.7413 -6.1740 4.5767 27 6 6.0404 -4.7541 1.4400 28 1 -0.4850 0.8401 -0.0004 29 1 3.8751 -0.6797 0.8896 30 1 3.8746 -0.6808 -0.8904 31 1 5.9692 -2.1239 -0.0003 32 1 7.8389 -3.4429 -0.3492 33 1 7.2037 -4.4468 -1.6953 34 1 8.9024 -5.5621 0.0894 35 1 7.4676 -6.4868 -0.4502 36 1 8.7048 -7.5871 0.4004 37 1 10.8511 -8.7678 0.2009 38 1 12.4623 -8.7287 2.0595 39 1 11.9394 -7.5089 4.1288 40 1 5.1962 -5.3727 1.7446 41 1 6.1474 -3.9088 2.1198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:14 Heat of formation + Delta-G solvation = -107.135082 kcal Electronic energy + Delta-G solvation = -25977.428629 eV Core-core repulsion = 21963.832394 eV Total energy + Delta-G solvation = -4013.596235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.02698 -41.66352 -40.57484 -39.38702 -38.49472 -35.35819 -35.01427 -32.94722 -31.97584 -31.54727 -31.18550 -29.44250 -26.20395 -25.13049 -23.73819 -23.71159 -22.14582 -21.46034 -20.89963 -19.06235 -18.78190 -18.40683 -17.91038 -17.61956 -17.44200 -16.93090 -16.63682 -16.49376 -16.12263 -15.92667 -15.77780 -15.15179 -15.06896 -14.92299 -14.55242 -14.21892 -14.15747 -13.95806 -13.70602 -13.42431 -13.32626 -13.03627 -12.95974 -12.74076 -12.69597 -12.38729 -12.18828 -11.87870 -11.84982 -11.53772 -11.24132 -10.79086 -10.64422 -10.18972 -10.15792 -9.94125 -9.74172 -8.26444 -6.35089 -0.29498 0.14738 1.39103 1.44128 1.49413 1.54167 1.62237 1.83175 2.36391 2.38735 2.59011 3.06934 3.14233 3.21013 3.40673 3.59576 3.76112 3.98987 4.00879 4.08258 4.18520 4.26601 4.28838 4.33090 4.51246 4.64274 4.67674 4.71489 4.78467 4.91458 4.98285 5.01989 5.03743 5.06424 5.15303 5.22514 5.35174 5.48388 5.53938 5.80721 6.23446 6.25325 6.66029 6.84335 6.86142 7.25230 7.46810 8.91279 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.002414 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.571661 B =11597.313570 C =11910.843509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.231 1.231 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.029 4.029 10 C 0.523 3.477 11 O -0.582 6.582 12 N -0.713 5.713 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.123 4.123 16 C 0.090 3.910 17 N -0.606 5.606 18 C 0.562 3.438 19 O -0.586 6.586 20 C -0.185 4.185 21 C -0.062 4.062 22 C -0.122 4.122 23 C -0.055 4.055 24 C -0.161 4.161 25 C 0.112 3.888 26 F -0.151 7.151 27 C 0.097 3.903 28 H 0.268 0.732 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.418 0.582 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.163 0.837 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.157 0.843 40 H 0.043 0.957 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.664 -15.065 -3.882 37.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.215 1.215 6 H -0.153 1.153 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.069 4.069 10 C 0.312 3.688 11 O -0.461 6.461 12 N -0.367 5.367 13 C 0.029 3.971 14 H 0.108 0.892 15 C -0.161 4.161 16 C -0.031 4.031 17 N -0.338 5.338 18 C 0.352 3.648 19 O -0.467 6.467 20 C -0.189 4.189 21 C -0.081 4.081 22 C -0.140 4.140 23 C -0.073 4.073 24 C -0.180 4.180 25 C 0.091 3.909 26 F -0.129 7.129 27 C -0.028 4.028 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.256 0.744 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.180 0.820 37 H 0.195 0.805 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.061 0.939 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 33.658 -15.594 -3.230 37.235 hybrid contribution -1.014 1.207 1.035 1.886 sum 32.644 -14.387 -2.194 35.741 Atomic orbital electron populations 1.70103 1.08862 1.28398 1.52151 1.26184 0.95816 1.04031 0.93738 0.85503 0.79691 0.76676 0.79710 1.18232 1.21494 1.15330 1.21190 0.91162 0.93642 1.51286 0.95419 1.19616 0.95683 0.90901 1.00667 1.21226 0.81958 0.92426 0.73219 1.90589 1.57013 1.48050 1.50398 1.45854 1.06403 1.08305 1.76173 1.21871 0.97985 0.84107 0.93124 0.89150 1.23164 0.91506 0.98823 1.02572 1.23029 1.01214 0.99658 0.79198 1.48348 1.25402 1.50256 1.09824 1.18424 0.85328 0.78547 0.82476 1.90816 1.64149 1.62512 1.29188 1.19875 0.94187 1.06934 0.97931 1.21782 0.98395 0.93413 0.94475 1.21690 0.92351 0.98883 1.01027 1.21755 1.00730 0.94312 0.90476 1.21465 0.94953 0.99510 1.02046 1.18253 0.95708 0.95168 0.81725 1.91508 1.94039 1.78218 1.49168 1.22296 0.86392 0.94755 0.99344 0.92353 0.91491 0.90721 0.74421 0.88208 0.85660 0.86784 0.87877 0.82011 0.80510 0.80561 0.82499 0.93876 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 2 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 3 Si 0.96 42.23 27.47 68.60 1.88 44.12 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 7 C -0.53 -32.34 9.48 25.60 0.24 -32.10 16 8 H 0.03 1.98 7.00 -2.91 -0.02 1.96 16 9 C -0.03 -1.31 4.53 29.10 0.13 -1.17 16 10 C 0.52 22.21 7.82 87.66 0.69 22.89 16 11 O -0.58 -31.00 15.10 -3.02 -0.05 -31.04 16 12 N -0.71 -20.21 5.12 -436.91 -2.24 -22.45 16 13 C 0.14 3.28 3.30 46.19 0.15 3.43 16 14 H 0.09 2.55 7.55 -2.39 -0.02 2.53 16 15 C -0.12 -1.43 6.71 31.99 0.21 -1.21 16 16 C 0.09 1.01 5.12 86.86 0.44 1.46 16 17 N -0.61 -14.24 3.33 -815.33 -2.71 -16.95 16 18 C 0.56 16.38 7.43 86.74 0.64 17.03 16 19 O -0.59 -23.74 16.45 -3.93 -0.06 -23.80 16 20 C -0.19 -3.82 5.53 -20.05 -0.11 -3.93 16 21 C -0.06 -0.64 7.91 22.52 0.18 -0.46 16 22 C -0.12 -0.52 10.03 22.23 0.22 -0.29 16 23 C -0.05 -0.27 10.03 22.31 0.22 -0.04 16 24 C -0.16 -1.91 10.01 22.28 0.22 -1.68 16 25 C 0.11 2.39 7.24 22.67 0.16 2.55 16 26 F -0.15 -4.40 16.14 44.97 0.73 -3.68 16 27 C 0.10 2.85 6.64 86.73 0.58 3.42 16 28 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.07 2.77 7.20 -2.38 -0.02 2.76 16 30 H 0.07 2.92 7.57 -2.39 -0.02 2.90 16 31 H 0.42 8.56 8.56 -92.71 -0.79 7.77 16 32 H 0.10 0.93 8.01 -2.39 -0.02 0.91 16 33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.72 6.60 -2.39 -0.02 0.70 16 35 H 0.10 0.70 7.22 -2.39 -0.02 0.69 16 36 H 0.16 0.93 5.41 -2.91 -0.02 0.91 16 37 H 0.18 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.18 -0.45 8.06 -2.91 -0.02 -0.48 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -96.98 347.49 2.54 -94.44 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.23 Total: 10.76 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.46 Total: 10.26 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.65 Total: -101.05 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -0.11 Total: -54.84 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.73 Total: -3.68 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.12 kcal Total: -96.98 2.54 -94.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.694 kcal (2) G-P(sol) polarization free energy of solvation -96.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds