Wall clock time and date at job start Sat Apr 11 2020 00:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47017 * 68.38526 * 3 2 1 5 5 C 1.35981 * 117.00328 * 180.02562 * 4 3 2 6 6 C 1.38540 * 120.06553 * 0.02562 * 5 4 3 7 7 C 1.38434 * 119.99369 * 179.97438 * 6 5 4 8 8 F 1.35094 * 119.93725 * 179.97438 * 7 6 5 9 9 C 1.38471 * 120.12401 * 359.97438 * 7 6 5 10 10 C 1.38212 * 120.13465 * 359.72833 * 9 7 6 11 11 C 1.38690 * 120.00915 * 0.54927 * 10 9 7 12 12 N 1.40278 * 120.06438 * 179.71924 * 11 10 9 13 13 C 1.34769 * 120.00044 * 332.63399 * 12 11 10 14 14 O 1.21591 * 120.00210 * 4.80943 * 13 12 11 15 15 N 1.34780 * 119.99783 * 184.81093 * 13 12 11 16 16 C 1.46507 * 119.99840 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.46961 * 34.99836 * 16 15 13 18 18 C 1.50696 * 109.46879 * 155.00014 * 16 15 13 19 19 H 1.07998 * 120.00285 * 5.31605 * 18 16 15 20 20 C 1.37878 * 119.99520 * 185.31209 * 18 16 15 21 21 N 1.31517 * 119.99937 * 186.10532 * 20 18 16 22 22 Si 1.86804 * 120.00258 * 6.11178 * 20 18 16 23 23 H 1.48503 * 109.46716 * 269.99596 * 22 20 18 24 24 H 1.48502 * 109.46979 * 29.99665 * 22 20 18 25 25 H 1.48502 * 109.47257 * 149.99610 * 22 20 18 26 26 C 1.53000 * 109.46869 * 275.00033 * 16 15 13 27 27 C 1.52997 * 109.47476 * 65.42526 * 26 16 15 28 28 H 4.38447 * 5.44328 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47558 * 308.38913 * 3 2 1 30 30 H 1.08999 * 109.47206 * 188.38236 * 3 2 1 31 31 H 1.08004 * 120.00566 * 359.96013 * 6 5 4 32 32 H 1.08000 * 119.93291 * 180.02562 * 9 7 6 33 33 H 1.07993 * 119.99961 * 180.29677 * 10 9 7 34 34 H 0.97005 * 119.99811 * 152.63260 * 12 11 10 35 35 H 0.97001 * 120.00387 * 0.02562 * 15 13 12 36 36 H 0.97003 * 119.99839 * 354.98039 * 21 20 18 37 37 H 1.09001 * 109.47241 * 185.42888 * 26 16 15 38 38 H 1.09002 * 109.47012 * 305.42478 * 26 16 15 39 39 H 1.08996 * 109.47349 * 179.97438 * 27 26 16 40 40 H 1.09001 * 109.47181 * 300.00399 * 27 26 16 41 41 H 1.09002 * 109.47039 * 59.99968 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.4954 -1.2526 5 6 4.4706 -0.5610 -1.4181 6 6 5.3157 -0.1573 -0.3973 7 6 6.6879 -0.2252 -0.5672 8 9 7.5109 0.1693 0.4289 9 6 7.2185 -0.6966 -1.7562 10 6 6.3802 -1.1065 -2.7757 11 6 5.0047 -1.0355 -2.6137 12 7 4.1528 -1.4457 -3.6500 13 6 4.5694 -1.3814 -4.9300 14 8 5.7123 -1.0512 -5.1816 15 7 3.7192 -1.6830 -5.9314 16 6 4.1722 -1.6136 -7.3229 17 1 5.2167 -1.9199 -7.3807 18 6 3.3314 -2.5324 -8.1713 19 1 2.4854 -3.0446 -7.7374 20 6 3.6424 -2.7192 -9.5015 21 7 2.8420 -3.4241 -10.2712 22 14 5.2004 -1.9714 -10.2105 23 1 4.9056 -0.6107 -10.7271 24 1 6.2352 -1.8845 -9.1490 25 1 5.6989 -2.8245 -11.3191 26 6 4.0328 -0.1780 -7.8336 27 6 4.9881 0.7333 -7.0606 28 1 -1.0499 0.0002 -0.0001 29 1 3.0097 -0.6374 0.8055 30 1 3.0089 1.0175 0.1498 31 1 4.9041 0.2106 0.5310 32 1 8.2895 -0.7487 -1.8852 33 1 6.7963 -1.4784 -3.7003 34 1 3.2639 -1.7757 -3.4452 35 1 2.8073 -1.9460 -5.7308 36 1 2.0721 -3.8730 -9.8882 37 1 4.2779 -0.1446 -8.8951 38 1 3.0076 0.1619 -7.6865 39 1 4.8891 1.7559 -7.4247 40 1 4.7430 0.6999 -5.9990 41 1 6.0133 0.3934 -7.2076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274202844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:29 Heat of formation + Delta-G solvation = -42.877101 kcal Electronic energy + Delta-G solvation = -26451.785847 eV Core-core repulsion = 22440.976047 eV Total energy + Delta-G solvation = -4010.809800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.89235 -41.98242 -40.76619 -38.62063 -37.22853 -35.62908 -34.47876 -34.39343 -33.10502 -31.38032 -30.26521 -28.96711 -28.27382 -24.63129 -24.10758 -23.57781 -22.39996 -21.47325 -20.28011 -19.81815 -19.60856 -18.94127 -18.41409 -17.58890 -17.25132 -17.00883 -16.77769 -16.51323 -16.45195 -15.82506 -15.60368 -15.33922 -15.04680 -14.65108 -14.44243 -14.35383 -14.28802 -13.94901 -13.84939 -13.64847 -13.20149 -12.73407 -12.66109 -12.51659 -12.43964 -12.27709 -11.69525 -11.66290 -11.56298 -11.31085 -11.15752 -10.99232 -10.84224 -10.66944 -9.90295 -9.74819 -8.83644 -8.73093 -6.46437 0.04201 0.18706 1.18394 1.44087 1.53389 1.65945 1.71007 1.75512 2.07558 2.41984 2.50337 2.61719 3.04520 3.21168 3.28583 3.36267 3.72939 3.90449 4.01053 4.21674 4.27949 4.30328 4.32289 4.39629 4.52463 4.68518 4.85256 4.85972 4.98096 5.00970 5.09391 5.17275 5.24225 5.30339 5.41815 5.56255 5.58380 5.64918 5.71880 5.99150 6.09713 6.20416 6.51965 6.52306 7.08955 7.29512 7.58127 8.61942 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.003446 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.903219 B = 8123.951666 C = 9535.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.245 4.245 3 C 0.166 3.834 4 O -0.319 6.319 5 C 0.127 3.873 6 C -0.214 4.214 7 C 0.108 3.892 8 F -0.138 7.138 9 C -0.163 4.163 10 C -0.084 4.084 11 C 0.124 3.876 12 N -0.671 5.671 13 C 0.698 3.302 14 O -0.601 6.601 15 N -0.713 5.713 16 C 0.265 3.735 17 H 0.032 0.968 18 C -0.604 4.604 19 H 0.040 0.960 20 C -0.009 4.009 21 N -0.936 5.936 22 Si 1.079 2.921 23 H -0.258 1.258 24 H -0.261 1.261 25 H -0.288 1.288 26 C -0.135 4.135 27 C -0.132 4.132 28 H 0.253 0.747 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.418 0.582 35 H 0.399 0.601 36 H 0.257 0.743 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 8.456 24.050 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.245 4.245 3 C 0.093 3.907 4 O -0.234 6.234 5 C 0.078 3.922 6 C -0.234 4.234 7 C 0.088 3.912 8 F -0.117 7.117 9 C -0.182 4.182 10 C -0.105 4.105 11 C 0.028 3.972 12 N -0.319 5.319 13 C 0.399 3.601 14 O -0.481 6.481 15 N -0.364 5.364 16 C 0.160 3.840 17 H 0.049 0.951 18 C -0.643 4.643 19 H 0.058 0.942 20 C -0.209 4.209 21 N -0.572 5.572 22 Si 0.902 3.098 23 H -0.183 1.183 24 H -0.185 1.185 25 H -0.215 1.215 26 C -0.174 4.174 27 C -0.189 4.189 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.191 0.809 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.255 0.745 35 H 0.234 0.766 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.593 8.899 22.231 24.086 hybrid contribution -2.127 -0.811 1.587 2.775 sum 0.466 8.088 23.818 25.158 Atomic orbital electron populations 1.25909 0.96855 0.98240 0.95058 1.22710 0.94410 1.02945 1.04450 1.19594 0.84869 1.01577 0.84660 1.86074 1.17947 1.81077 1.38283 1.18156 0.82623 0.98057 0.93317 1.21092 0.91756 1.09168 1.01353 1.17364 0.87563 1.00388 0.85887 1.91493 1.71944 1.88611 1.59663 1.21152 1.01930 1.03207 0.91955 1.21346 0.90623 0.98404 1.00079 1.17151 0.90158 1.03050 0.86839 1.42365 1.19020 1.67414 1.03061 1.16050 0.85022 0.78467 0.80601 1.90791 1.18540 1.55640 1.83164 1.45272 1.14382 1.71063 1.05729 1.18835 0.95368 0.92772 0.76987 0.95053 1.22366 1.14914 1.29539 0.97463 0.94200 1.26854 1.03770 0.95985 0.94259 1.70939 1.15554 1.32791 1.37880 0.83568 0.73303 0.76646 0.76269 1.18343 1.18534 1.21492 1.22174 0.99477 0.96638 0.99102 1.21741 0.98980 0.98404 0.99773 0.73034 0.87241 0.87682 0.80877 0.82912 0.83040 0.74548 0.76647 0.93367 0.92871 0.92426 0.92593 0.93487 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 19.25 74.32 1.43 -0.52 16 2 C -0.25 -4.09 13.73 31.13 0.43 -3.66 16 3 C 0.17 2.36 5.21 70.18 0.37 2.73 16 4 O -0.32 -6.65 9.54 -93.33 -0.89 -7.54 16 5 C 0.13 2.81 6.70 22.59 0.15 2.96 16 6 C -0.21 -3.91 9.01 22.39 0.20 -3.71 16 7 C 0.11 2.26 7.30 22.37 0.16 2.43 16 8 F -0.14 -2.85 17.26 44.97 0.78 -2.07 16 9 C -0.16 -3.75 10.02 22.32 0.22 -3.52 16 10 C -0.08 -2.35 8.78 22.37 0.20 -2.16 16 11 C 0.12 3.42 6.45 38.15 0.25 3.67 16 12 N -0.67 -19.72 5.28 -316.74 -1.67 -21.39 16 13 C 0.70 25.66 7.04 179.06 1.26 26.92 16 14 O -0.60 -24.84 10.47 -4.00 -0.04 -24.88 16 15 N -0.71 -27.82 5.03 -461.40 -2.32 -30.15 16 16 C 0.27 12.31 1.81 44.24 0.08 12.39 16 17 H 0.03 1.60 6.06 -2.39 -0.01 1.59 16 18 C -0.60 -32.54 9.09 25.60 0.23 -32.31 16 19 H 0.04 2.27 7.95 -2.91 -0.02 2.25 16 20 C -0.01 -0.51 5.43 84.65 0.46 -0.05 16 21 N -0.94 -56.62 13.70 21.45 0.29 -56.33 16 22 Si 1.08 50.25 25.36 68.60 1.74 51.99 16 23 H -0.26 -11.06 6.76 99.48 0.67 -10.39 16 24 H -0.26 -11.58 6.36 99.48 0.63 -10.95 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 26 C -0.14 -5.75 5.20 30.59 0.16 -5.59 16 27 C -0.13 -5.03 8.52 71.98 0.61 -4.41 16 28 H 0.25 1.40 7.80 -4.42 -0.03 1.37 16 29 H 0.11 1.04 7.66 -2.39 -0.02 1.02 16 30 H 0.11 1.10 7.66 -2.39 -0.02 1.08 16 31 H 0.17 1.97 6.30 -2.91 -0.02 1.96 16 32 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.15 5.00 5.62 -2.91 -0.02 4.98 16 34 H 0.42 10.50 8.41 -92.70 -0.78 9.72 16 35 H 0.40 14.03 8.54 -92.71 -0.79 13.24 16 36 H 0.26 15.59 8.72 -92.71 -0.81 14.78 16 37 H 0.05 2.33 4.43 -2.39 -0.01 2.32 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.82 5.63 -2.39 -0.01 1.81 16 41 H 0.04 1.77 7.87 -2.39 -0.02 1.75 16 Total: -1.00 -67.73 347.41 3.48 -64.25 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.62 Total: 30.96 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 6.21 Total: -4.84 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -3.70 Total: -107.86 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.93 Total: -32.42 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 1.74 Total: 51.99 kcal Total: -67.73 3.48 -64.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274202844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.368 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds