Wall clock time and date at job start Sat Apr 11 2020 00:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46506 * 119.99880 * 0.26799 * 8 6 5 10 10 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 11 11 C 1.53000 * 109.47306 * 89.99609 * 10 8 6 12 12 F 1.39891 * 109.47319 * 60.00256 * 11 10 8 13 13 F 1.39904 * 109.46998 * 180.02562 * 11 10 8 14 14 F 1.39905 * 109.47174 * 299.99927 * 11 10 8 15 15 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 16 16 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 17 17 C 1.46503 * 125.97580 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47232 * 270.00070 * 17 16 2 19 19 H 1.08004 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47364 * 60.00352 * 22 20 18 24 24 H 1.48502 * 109.46795 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47383 * 299.99889 * 22 20 18 26 26 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 27 27 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 28 28 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 29 29 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 31 31 H 1.08998 * 109.46518 * 90.00508 * 9 8 6 32 32 H 1.08994 * 109.46858 * 210.00206 * 9 8 6 33 33 H 1.09001 * 109.47111 * 330.00312 * 9 8 6 34 34 H 1.08994 * 109.47013 * 209.99592 * 10 8 6 35 35 H 1.09005 * 109.46881 * 329.99727 * 10 8 6 36 36 H 1.09001 * 109.47222 * 29.99739 * 17 16 2 37 37 H 1.08997 * 109.47398 * 150.00005 * 17 16 2 38 38 H 0.97000 * 119.99662 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 7.0664 3.0046 -0.0113 10 6 5.5813 5.0621 -0.0152 11 6 5.5272 5.5705 1.4268 12 9 6.7097 5.2230 2.0885 13 9 5.3847 6.9623 1.4255 14 9 4.4370 4.9912 2.0849 15 7 3.6337 -0.6576 0.0035 16 7 2.3017 -1.0909 0.0059 17 6 1.8501 -2.4846 0.0140 18 6 1.6957 -2.9544 1.4375 19 1 1.9120 -2.2819 2.2546 20 6 1.2775 -4.2423 1.6970 21 7 1.0127 -5.0606 0.7021 22 14 1.0869 -4.8248 3.4616 23 1 0.0870 -3.9758 4.1579 24 1 0.6290 -6.2374 3.4698 25 1 2.3935 -4.7244 4.1599 26 1 -0.3632 0.0056 1.0277 27 1 -0.3633 0.8871 -0.5187 28 1 -0.3633 -0.8927 -0.5089 29 1 1.9721 2.1210 0.0004 30 1 5.6588 1.0777 -0.0066 31 1 7.3995 2.8551 -1.0383 32 1 7.7615 3.6681 0.5032 33 1 7.0325 2.0443 0.5032 34 1 6.4306 5.5134 -0.5280 35 1 4.6598 5.3329 -0.5308 36 1 0.8912 -2.5588 -0.4990 37 1 2.5845 -3.1075 -0.4966 38 1 0.7188 -5.9668 0.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276177605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:35 Heat of formation + Delta-G solvation = -113.361439 kcal Electronic energy + Delta-G solvation = -27149.973545 eV Core-core repulsion = 22614.170536 eV Total energy + Delta-G solvation = -4535.803009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.05226 -48.58502 -48.55120 -42.38085 -41.18402 -37.11229 -36.40388 -35.32987 -33.11922 -32.62095 -30.85087 -28.63165 -27.87597 -27.56280 -25.28898 -24.46702 -22.50959 -21.31231 -20.78003 -19.62475 -19.49279 -18.95814 -18.76473 -18.47488 -17.78623 -17.22162 -16.78314 -16.42703 -15.90703 -15.81445 -15.52976 -15.42716 -15.15027 -14.99069 -14.74360 -14.70007 -14.66855 -14.44921 -14.19361 -13.82575 -13.68708 -13.60500 -13.48745 -13.24876 -13.15307 -13.00634 -12.81370 -12.65627 -12.23757 -12.13317 -11.60432 -11.38252 -11.17827 -10.72773 -10.13927 -9.57792 -9.10311 -8.32173 -6.49766 0.89453 0.99628 1.38522 1.39963 1.48542 1.52275 1.81120 1.92615 2.32776 2.34630 2.70415 2.87874 2.97549 3.07509 3.28795 3.81984 4.02812 4.10075 4.15826 4.33204 4.44222 4.60731 4.72657 4.73141 4.84327 4.90300 4.96367 4.99409 5.06137 5.15992 5.33236 5.54024 5.55895 5.81937 5.94057 6.26949 6.47637 6.62794 7.04512 7.21086 7.23779 8.73482 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.002832 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.332519 B = 9885.207834 C =10037.871716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.296 4.296 4 C 0.289 3.711 5 N -0.632 5.632 6 C 0.711 3.289 7 O -0.582 6.582 8 N -0.620 5.620 9 C 0.061 3.939 10 C 0.099 3.901 11 C 0.427 3.573 12 F -0.186 7.186 13 F -0.182 7.182 14 F -0.197 7.197 15 N -0.357 5.357 16 N -0.342 5.342 17 C 0.276 3.724 18 C -0.554 4.554 19 H 0.049 0.951 20 C 0.024 3.976 21 N -0.918 5.918 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.276 1.276 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.167 0.833 30 H 0.421 0.579 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.175 0.825 35 H 0.129 0.871 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 21.212 -3.222 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.327 4.327 4 C 0.034 3.966 5 N -0.285 5.285 6 C 0.412 3.588 7 O -0.459 6.459 8 N -0.357 5.357 9 C -0.080 4.080 10 C -0.027 4.027 11 C 0.371 3.629 12 F -0.167 7.167 13 F -0.163 7.163 14 F -0.179 7.179 15 N -0.188 5.188 16 N -0.125 5.125 17 C 0.157 3.843 18 C -0.593 4.593 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.556 5.556 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.201 1.201 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.184 0.816 30 H 0.261 0.739 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.193 0.807 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.578 20.218 -3.258 23.525 hybrid contribution -0.059 -0.188 1.218 1.233 sum 11.519 20.030 -2.041 23.196 Atomic orbital electron populations 1.20466 0.85383 1.04245 1.03885 1.21732 0.96640 0.86442 0.99466 1.21397 0.89887 0.99911 1.21508 1.18933 0.87982 0.88957 1.00694 1.41465 1.07273 1.03673 1.76060 1.15740 0.84880 0.80494 0.77685 1.90876 1.24606 1.73615 1.56765 1.46796 1.06286 1.04872 1.77719 1.22303 0.81038 0.99912 1.04705 1.22767 1.10940 0.79860 0.89122 1.21784 0.73149 0.75466 0.92518 1.93161 1.47802 1.91843 1.83921 1.93188 1.95554 1.30565 1.97034 1.93229 1.56109 1.84494 1.84051 1.77162 1.00097 1.09636 1.31908 1.48770 1.01633 1.07510 1.54581 1.19239 0.94966 0.72394 0.97695 1.21419 1.47616 0.98395 0.91836 0.93302 1.25707 0.93935 0.95881 1.02184 1.69990 1.45008 1.07426 1.33144 0.85434 0.78720 0.77697 0.78813 1.19105 1.19691 1.20113 0.89965 0.87535 0.91207 0.81566 0.73944 0.88969 0.87657 0.90982 0.80725 0.85280 0.92944 0.95662 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.75 10.11 71.24 0.72 -2.03 16 2 C 0.09 3.71 6.93 41.39 0.29 4.00 16 3 C -0.30 -12.19 9.52 22.11 0.21 -11.98 16 4 C 0.29 11.77 8.11 133.31 1.08 12.85 16 5 N -0.63 -19.05 5.32 -321.23 -1.71 -20.75 16 6 C 0.71 19.60 7.84 179.05 1.40 21.01 16 7 O -0.58 -19.89 12.45 -4.01 -0.05 -19.94 16 8 N -0.62 -10.44 2.79 -864.91 -2.41 -12.85 16 9 C 0.06 0.55 10.00 127.77 1.28 1.83 16 10 C 0.10 1.22 5.44 86.38 0.47 1.69 16 11 C 0.43 7.60 3.29 71.98 0.24 7.84 16 12 F -0.19 -3.21 16.23 44.97 0.73 -2.48 16 13 F -0.18 -3.13 17.32 44.97 0.78 -2.35 16 14 F -0.20 -5.31 16.24 44.97 0.73 -4.58 16 15 N -0.36 -16.74 12.59 -54.43 -0.69 -17.43 16 16 N -0.34 -16.62 3.59 -338.44 -1.22 -17.83 16 17 C 0.28 14.60 5.99 85.63 0.51 15.11 16 18 C -0.55 -31.21 9.39 25.60 0.24 -30.97 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.02 1.32 5.46 84.66 0.46 1.78 16 21 N -0.92 -51.81 13.29 21.45 0.28 -51.52 16 22 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.39 7.07 -2.39 -0.02 2.37 16 29 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 30 H 0.42 10.01 6.55 -92.71 -0.61 9.40 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.54 7.25 -2.39 -0.02 0.52 16 33 H 0.07 0.74 6.36 -2.39 -0.02 0.72 16 34 H 0.18 0.41 8.07 -2.39 -0.02 0.39 16 35 H 0.13 1.78 7.42 -2.38 -0.02 1.76 16 36 H 0.05 2.74 7.04 -2.39 -0.02 2.73 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -74.09 337.10 5.90 -68.19 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.52 Total: 15.22 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 6.90 Total: 21.12 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.74 Total: -120.39 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 2.24 Total: -9.41 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.09 5.90 -68.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276177605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.175 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds