Wall clock time and date at job start Sat Apr 11 2020 00:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46839 * 34.99233 * 9 8 6 11 11 C 1.53005 * 109.46667 * 274.99952 * 9 8 6 12 12 C 1.52995 * 109.47250 * 155.00141 * 9 8 6 13 13 F 1.39904 * 109.47261 * 59.99729 * 12 9 8 14 14 F 1.39900 * 109.47012 * 179.97438 * 12 9 8 15 15 F 1.39894 * 109.47106 * 299.99524 * 12 9 8 16 16 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 17 17 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 18 18 C 1.46496 * 125.97468 * 359.94647 * 17 2 1 19 19 C 1.50702 * 109.47635 * 89.99791 * 18 17 2 20 20 H 1.07999 * 119.99790 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99693 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46844 * 60.00071 * 23 21 19 25 25 H 1.48494 * 109.46947 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47031 * 300.00020 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 30 30 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 31 31 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 32 32 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.47166 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.47200 * 299.99850 * 11 9 8 35 35 H 1.09002 * 109.47001 * 60.00358 * 11 9 8 36 36 H 1.09001 * 109.47030 * 210.00125 * 18 17 2 37 37 H 1.09005 * 109.47259 * 329.99077 * 18 17 2 38 38 H 0.96997 * 120.00168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 1 4.7073 5.3352 0.6141 11 6 5.4031 5.5639 -1.4118 12 6 6.8306 5.6991 0.6343 13 9 7.9521 5.3486 -0.1250 14 9 6.6888 7.0909 0.6408 15 9 6.9934 5.2404 1.9458 16 7 3.6337 -0.6575 -0.0044 17 7 2.3017 -1.0909 -0.0060 18 6 1.8501 -2.4845 -0.0124 19 6 1.6941 -2.9555 -1.4354 20 1 1.9094 -2.2838 -2.2532 21 6 1.2765 -4.2440 -1.6933 22 7 1.0148 -5.0622 -0.6974 23 14 1.0824 -4.8275 -3.4572 24 1 2.3876 -4.7262 -4.1585 25 1 0.6260 -6.2406 -3.4637 26 1 0.0802 -3.9799 -4.1515 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9720 2.1211 0.0004 31 1 5.6587 1.0778 0.0037 32 1 6.6148 3.2075 0.0131 33 1 5.2921 6.6482 -1.4064 34 1 6.2770 5.2908 -2.0034 35 1 4.5130 5.1101 -1.8476 36 1 2.5851 -3.1070 0.4978 37 1 0.8919 -2.5584 0.5019 38 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288984644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:12 Heat of formation + Delta-G solvation = -105.767778 kcal Electronic energy + Delta-G solvation = -26650.907135 eV Core-core repulsion = 22115.433412 eV Total energy + Delta-G solvation = -4535.473723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.57005 -48.07208 -48.02889 -40.90289 -39.85137 -36.27987 -34.83527 -33.44674 -31.87238 -31.11161 -30.47471 -26.92505 -26.59212 -26.34871 -23.56949 -22.61001 -21.49563 -20.26329 -19.77260 -18.91283 -18.82841 -18.57881 -17.30173 -16.69778 -16.33101 -15.78450 -15.58974 -15.11917 -14.93346 -14.73319 -14.50355 -14.42369 -14.31013 -14.18968 -14.18100 -14.09879 -13.65105 -13.13259 -13.02056 -12.48697 -12.44321 -12.34398 -12.17980 -11.74571 -11.70949 -11.43139 -11.12698 -10.84068 -10.52611 -10.30250 -10.14290 -9.76808 -9.72837 -9.55200 -8.65587 -7.97049 -7.47094 -6.26890 -4.34840 1.87158 2.29226 2.53844 2.96732 3.22228 3.23803 3.26278 3.28649 3.35936 3.56802 3.74344 3.82072 4.13586 4.30127 4.50581 4.62544 5.06573 5.11444 5.26510 5.38755 5.65876 5.71538 5.79798 5.93890 6.08952 6.10759 6.41375 6.45739 6.57483 6.89929 6.96747 7.05056 7.43199 7.65378 7.76779 7.87427 8.03503 8.36584 8.62606 8.73238 9.31627 10.80314 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.002446 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.730047 B =11446.383483 C =11640.886476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.279 3.721 5 N -0.638 5.638 6 C 0.722 3.278 7 O -0.559 6.559 8 N -0.741 5.741 9 C 0.127 3.873 10 H 0.134 0.866 11 C -0.172 4.172 12 C 0.447 3.553 13 F -0.179 7.179 14 F -0.173 7.173 15 F -0.176 7.176 16 N -0.321 5.321 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.538 4.538 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.408 0.592 32 H 0.403 0.597 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.382 20.782 2.099 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.026 3.974 5 N -0.288 5.288 6 C 0.421 3.579 7 O -0.433 6.433 8 N -0.399 5.399 9 C 0.019 3.981 10 H 0.152 0.848 11 C -0.230 4.230 12 C 0.392 3.608 13 F -0.161 7.161 14 F -0.154 7.154 15 F -0.158 7.158 16 N -0.151 5.151 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.243 0.757 32 H 0.239 0.761 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.001 19.873 2.170 21.924 hybrid contribution 0.748 -0.088 -0.802 1.100 sum 9.750 19.785 1.368 22.099 Atomic orbital electron populations 1.20382 0.87899 1.03884 1.02554 1.21066 0.94933 0.87093 1.00807 1.21220 0.89602 0.99851 1.21292 1.18624 0.86350 0.89286 1.03164 1.41265 1.07938 1.03372 1.76176 1.15383 0.84123 0.80551 0.77826 1.90901 1.23108 1.73374 1.55914 1.44757 1.08897 1.04429 1.81819 1.21874 0.95045 0.80714 1.00441 0.84792 1.22290 1.04889 1.02524 0.93294 1.20724 0.85968 0.77275 0.76809 1.93200 1.55513 1.91675 1.75699 1.93211 1.95810 1.30094 1.96331 1.93237 1.96152 1.88542 1.37852 1.77256 1.00060 1.08225 1.29574 1.48993 1.00821 1.07810 1.52293 1.19688 0.95985 0.71305 0.98903 1.21290 1.46978 0.97977 0.91363 0.91778 1.24927 0.94658 0.96030 0.98131 1.69907 1.44804 1.07024 1.31214 0.86412 0.78817 0.77674 0.83769 1.19994 1.20958 1.19906 0.91063 0.89900 0.90599 0.82200 0.75668 0.76128 0.90088 0.90952 0.89147 0.93002 0.92760 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.89 36.01 0.36 -1.13 16 2 C 0.09 1.91 6.93 -82.28 -0.57 1.34 16 3 C -0.29 -5.77 9.52 -39.83 -0.38 -6.15 16 4 C 0.28 5.50 8.11 -154.36 -1.25 4.25 16 5 N -0.64 -9.37 5.46 -15.51 -0.08 -9.45 16 6 C 0.72 9.71 8.50 -86.92 -0.74 8.97 16 7 O -0.56 -9.17 13.13 5.28 0.07 -9.10 16 8 N -0.74 -6.73 4.99 -58.67 -0.29 -7.03 16 9 C 0.13 1.01 2.55 -67.93 -0.17 0.84 16 10 H 0.13 1.13 7.58 -51.93 -0.39 0.74 16 11 C -0.17 -1.20 9.24 37.16 0.34 -0.86 16 12 C 0.45 3.43 2.75 37.16 0.10 3.53 16 13 F -0.18 -1.38 16.44 2.25 0.04 -1.34 16 14 F -0.17 -1.36 16.80 2.25 0.04 -1.32 16 15 F -0.18 -1.58 17.24 2.25 0.04 -1.54 16 16 N -0.32 -7.24 12.59 31.44 0.40 -6.85 16 17 N -0.32 -7.39 3.59 -58.32 -0.21 -7.60 16 18 C 0.26 6.55 5.81 -5.20 -0.03 6.52 16 19 C -0.54 -14.63 9.39 -34.44 -0.32 -14.96 16 20 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 23 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 31 H 0.41 4.74 8.84 -40.82 -0.36 4.38 16 32 H 0.40 2.74 8.32 -40.82 -0.34 2.40 16 33 H 0.08 0.45 7.80 -51.93 -0.41 0.04 16 34 H 0.07 0.46 7.80 -51.93 -0.41 0.06 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -31.66 342.81 -6.14 -37.80 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.25 Total: 5.45 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.76 Total: 4.04 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.55 Total: -55.03 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.11 Total: -4.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.66 -6.14 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288984644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.968 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds