Wall clock time and date at job start Sat Apr 11 2020 00:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33944 * 125.12158 * 2 1 4 4 C 1.34444 * 111.42233 * 179.97438 * 3 2 1 5 5 N 1.33104 * 134.01047 * 179.97438 * 4 3 2 6 6 C 1.31600 * 120.77172 * 180.02562 * 5 4 3 7 7 C 1.50708 * 118.64624 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47257 * 270.02449 * 7 6 5 9 9 C 1.46901 * 110.99834 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47124 * 325.00480 * 9 8 7 11 11 C 1.53002 * 109.46852 * 85.00162 * 9 8 7 12 12 C 1.50697 * 109.46924 * 205.00099 * 9 8 7 13 13 H 1.07998 * 120.00225 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99755 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99968 * 179.97438 * 14 12 9 16 16 Si 1.86796 * 120.00071 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47500 * 89.99997 * 16 14 12 18 18 H 1.48507 * 109.47144 * 210.00318 * 16 14 12 19 19 H 1.48500 * 109.46955 * 329.99696 * 16 14 12 20 20 N 1.31998 * 122.70128 * 0.02562 * 6 5 4 21 21 C 1.33084 * 120.83843 * 359.97438 * 20 6 5 22 22 N 1.38384 * 120.84736 * 179.73009 * 21 20 6 23 23 C 1.39915 * 118.31089 * 0.02562 * 21 20 6 24 24 C 1.36166 * 125.12510 * 179.97438 * 2 1 3 25 25 C 1.46982 * 127.19507 * 0.02562 * 24 2 1 26 26 O 1.21563 * 120.00070 * 89.97744 * 25 24 2 27 27 O 1.34814 * 120.00038 * 269.97470 * 25 24 2 28 28 H 1.09003 * 109.47184 * 0.02752 * 1 2 3 29 29 H 1.08996 * 109.46926 * 120.02105 * 1 2 3 30 30 H 1.08992 * 109.47094 * 240.02511 * 1 2 3 31 31 H 1.09003 * 109.46672 * 30.02671 * 7 6 5 32 32 H 1.09001 * 109.46736 * 150.02325 * 7 6 5 33 33 H 1.00902 * 111.00096 * 303.95605 * 8 7 6 34 34 H 1.09003 * 109.46753 * 59.99790 * 11 9 8 35 35 H 1.09000 * 109.46768 * 179.97438 * 11 9 8 36 36 H 1.08992 * 109.47107 * 299.99767 * 11 9 8 37 37 H 0.96998 * 119.99888 * 180.02562 * 15 14 12 38 38 H 0.96998 * 120.00051 * 359.97438 * 22 21 20 39 39 H 0.97001 * 120.00312 * 179.97438 * 22 21 20 40 40 H 0.96697 * 116.99910 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2777 1.0956 0.0000 4 6 3.5838 0.7772 0.0006 5 7 4.7090 1.4882 0.0004 6 6 5.8823 0.8920 0.0006 7 6 7.1255 1.7438 -0.0003 8 7 7.5289 2.0201 -1.3855 9 6 8.7400 2.8506 -1.4254 10 1 8.7250 3.5551 -0.5939 11 6 9.9759 1.9557 -1.3134 12 6 8.7858 3.6098 -2.7264 13 1 7.9946 3.4873 -3.4513 14 6 9.8383 4.4600 -2.9918 15 7 9.8786 5.1221 -4.1273 16 14 11.2078 4.6702 -1.7389 17 1 12.2744 3.6702 -1.9988 18 1 11.7744 6.0385 -1.8499 19 1 10.6634 4.4694 -0.3720 20 7 6.0148 -0.4213 0.0005 21 6 4.9464 -1.2148 0.0007 22 7 5.0851 -2.5916 -0.0050 23 6 3.6792 -0.6215 0.0004 24 6 2.2905 -1.1137 0.0005 25 6 1.8441 -2.5141 0.0006 26 8 1.6595 -3.0933 -1.0521 27 8 1.6395 -3.1563 1.1682 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5141 -0.8898 30 1 -0.3633 -0.5134 0.8901 31 1 6.9224 2.6836 0.5134 32 1 7.9285 1.2151 0.5135 33 1 7.6605 1.1631 -1.9016 34 1 9.9909 1.2511 -2.1449 35 1 10.8745 2.5718 -1.3435 36 1 9.9428 1.4066 -0.3724 37 1 10.6192 5.7200 -4.3141 38 1 5.9696 -2.9899 -0.0096 39 1 4.2980 -3.1585 -0.0044 40 1 1.3458 -4.0762 1.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574205453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:18 Heat of formation + Delta-G solvation = -14.202542 kcal Electronic energy + Delta-G solvation = -26316.139834 eV Core-core repulsion = 22326.493418 eV Total energy + Delta-G solvation = -3989.646416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.21645 -40.49704 -40.20899 -36.68122 -36.58046 -35.70780 -33.63081 -33.04472 -32.21529 -31.27400 -30.03906 -27.76130 -25.58561 -25.00496 -24.45582 -24.12381 -21.99983 -20.83635 -20.23734 -19.28813 -18.52696 -18.17801 -17.21593 -17.06786 -16.88036 -16.47718 -16.13037 -15.61793 -15.13392 -14.86622 -14.34852 -14.24563 -14.06354 -13.81090 -13.69394 -13.50991 -13.26366 -12.85812 -12.67396 -12.34904 -12.13052 -12.08526 -11.67349 -11.50072 -11.41976 -11.03136 -10.91962 -10.46259 -10.28934 -10.08616 -9.74904 -9.47196 -9.35952 -9.13689 -8.52460 -8.24221 -7.47140 -5.99412 -3.96941 0.49432 0.95018 1.40442 1.59929 1.70340 2.51171 2.91642 3.29744 3.39296 3.42543 3.62136 3.72367 3.96405 4.12086 4.44754 4.50366 4.58827 4.71325 4.86695 4.91041 5.02615 5.19047 5.24205 5.31215 5.57575 5.70139 5.79471 5.84970 6.07540 6.23955 6.32697 6.42609 6.51353 6.54399 6.74339 6.81384 7.12863 7.26038 7.28789 7.70816 7.87340 8.14142 8.27071 8.72351 9.12794 9.62337 11.14194 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.002786 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.368680 B =10048.911551 C =10591.579531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.094 3.906 3 O -0.160 6.160 4 C 0.338 3.662 5 N -0.515 5.515 6 C 0.416 3.584 7 C 0.125 3.875 8 N -0.661 5.661 9 C 0.186 3.814 10 H 0.039 0.961 11 C -0.184 4.184 12 C -0.497 4.497 13 H 0.082 0.918 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.268 1.268 20 N -0.573 5.573 21 C 0.496 3.504 22 N -0.824 5.824 23 C -0.272 4.272 24 C -0.185 4.185 25 C 0.561 3.439 26 O -0.491 6.491 27 O -0.505 6.505 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.335 0.665 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.414 0.586 39 H 0.406 0.594 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 -18.450 13.836 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.055 6.055 4 C 0.156 3.844 5 N -0.243 5.243 6 C 0.148 3.852 7 C -0.007 4.007 8 N -0.292 5.292 9 C 0.077 3.923 10 H 0.057 0.943 11 C -0.243 4.243 12 C -0.536 4.536 13 H 0.100 0.900 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.225 1.225 19 H -0.193 1.193 20 N -0.301 5.301 21 C 0.245 3.755 22 N -0.368 5.368 23 C -0.283 4.283 24 C -0.190 4.190 25 C 0.402 3.598 26 O -0.377 6.377 27 O -0.317 6.317 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.245 0.755 39 H 0.236 0.764 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -17.986 -16.629 13.387 27.915 hybrid contribution 0.701 -2.174 0.716 2.393 sum -17.285 -18.802 14.103 29.175 Atomic orbital electron populations 1.20670 0.82965 1.06005 1.04738 1.22526 0.93699 0.81593 0.97851 1.83734 1.13809 1.33395 1.74558 1.19255 0.84357 0.86900 0.93865 1.67278 0.94487 1.39927 1.22617 1.23028 0.91337 0.85769 0.85072 1.20793 0.88357 0.97091 0.94424 1.60645 1.38595 1.21816 1.08135 1.19677 0.82704 0.90899 0.99017 0.94335 1.22872 1.01498 1.00675 0.99230 1.20953 1.08209 1.23175 1.01227 0.89973 1.24933 0.97834 0.95512 0.95125 1.69885 1.32077 1.28693 1.23334 0.86888 0.82703 0.76109 0.82591 1.20811 1.22476 1.19309 1.68096 1.30198 1.06115 1.25712 1.17786 0.86450 0.86167 0.85100 1.42100 1.12325 1.02024 1.80318 1.20048 0.92176 0.95988 1.20092 1.19063 0.92144 0.90632 1.17112 1.19703 0.73123 0.85751 0.81248 1.90995 1.46609 1.67312 1.32803 1.84734 1.79886 1.32276 1.34760 0.88606 0.88291 0.88283 0.88159 0.92546 0.84707 0.92615 0.93530 0.95204 0.92701 0.75497 0.76439 0.72561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 10.12 36.01 0.36 -0.11 16 2 C 0.09 0.98 7.31 -35.05 -0.26 0.72 16 3 O -0.16 -2.19 10.51 6.28 0.07 -2.13 16 4 C 0.34 5.41 8.61 -16.27 -0.14 5.27 16 5 N -0.52 -9.25 10.35 -10.75 -0.11 -9.36 16 6 C 0.42 7.18 7.14 -157.18 -1.12 6.06 16 7 C 0.12 2.19 5.89 -4.97 -0.03 2.17 16 8 N -0.66 -13.89 6.22 -109.21 -0.68 -14.57 16 9 C 0.19 4.37 2.17 -68.86 -0.15 4.22 16 10 H 0.04 0.93 6.86 -51.93 -0.36 0.57 16 11 C -0.18 -3.92 8.64 37.16 0.32 -3.60 16 12 C -0.50 -14.19 9.42 -34.44 -0.32 -14.51 16 13 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 14 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 15 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 16 Si 0.89 21.92 24.37 -169.99 -4.14 17.78 16 17 H -0.28 -6.76 6.87 56.52 0.39 -6.38 16 18 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 20 N -0.57 -8.97 10.36 -9.90 -0.10 -9.07 16 21 C 0.50 6.84 7.86 -154.74 -1.22 5.63 16 22 N -0.82 -8.01 9.05 31.28 0.28 -7.73 16 23 C -0.27 -3.85 6.35 -104.83 -0.67 -4.51 16 24 C -0.19 -2.13 6.18 -103.40 -0.64 -2.77 16 25 C 0.56 5.20 6.40 34.27 0.22 5.42 16 26 O -0.49 -5.66 17.90 -19.31 -0.35 -6.00 16 27 O -0.50 -2.90 13.44 -40.80 -0.55 -3.45 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 1.75 8.05 -51.93 -0.42 1.33 16 32 H 0.06 0.91 7.44 -51.93 -0.39 0.52 16 33 H 0.34 6.84 8.47 -39.29 -0.33 6.50 16 34 H 0.05 1.16 8.13 -51.93 -0.42 0.74 16 35 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 36 H 0.03 0.54 7.45 -51.93 -0.39 0.15 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.41 3.28 8.95 -40.82 -0.37 2.92 16 39 H 0.41 3.33 7.25 -40.82 -0.30 3.03 16 40 H 0.42 0.28 9.11 45.56 0.42 0.70 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -36.25 343.96 -6.95 -43.20 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.59 Total: 7.49 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -3.73 Total: 5.83 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: 0.16 Total: -67.90 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.83 Total: -11.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.25 -6.95 -43.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574205453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.994 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds