Wall clock time and date at job start Sat Apr 11 2020 00:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33944 * 125.12158 * 2 1 4 4 C 1.34444 * 111.42233 * 179.97438 * 3 2 1 5 5 N 1.33104 * 134.01047 * 179.97438 * 4 3 2 6 6 C 1.31600 * 120.77172 * 180.02562 * 5 4 3 7 7 C 1.50708 * 118.64624 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47257 * 270.02449 * 7 6 5 9 9 C 1.46901 * 110.99834 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47124 * 325.00480 * 9 8 7 11 11 C 1.53002 * 109.46852 * 85.00162 * 9 8 7 12 12 C 1.50697 * 109.46924 * 205.00099 * 9 8 7 13 13 H 1.07998 * 120.00225 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99755 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99968 * 179.97438 * 14 12 9 16 16 Si 1.86796 * 120.00071 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47500 * 89.99997 * 16 14 12 18 18 H 1.48507 * 109.47144 * 210.00318 * 16 14 12 19 19 H 1.48500 * 109.46955 * 329.99696 * 16 14 12 20 20 N 1.31998 * 122.70128 * 0.02562 * 6 5 4 21 21 C 1.33084 * 120.83843 * 359.97438 * 20 6 5 22 22 N 1.38384 * 120.84736 * 179.73009 * 21 20 6 23 23 C 1.39915 * 118.31089 * 0.02562 * 21 20 6 24 24 C 1.36166 * 125.12510 * 179.97438 * 2 1 3 25 25 C 1.46982 * 127.19507 * 0.02562 * 24 2 1 26 26 O 1.21563 * 120.00070 * 89.97744 * 25 24 2 27 27 O 1.34814 * 120.00038 * 269.97470 * 25 24 2 28 28 H 1.09003 * 109.47184 * 0.02752 * 1 2 3 29 29 H 1.08996 * 109.46926 * 120.02105 * 1 2 3 30 30 H 1.08992 * 109.47094 * 240.02511 * 1 2 3 31 31 H 1.09003 * 109.46672 * 30.02671 * 7 6 5 32 32 H 1.09001 * 109.46736 * 150.02325 * 7 6 5 33 33 H 1.00902 * 111.00096 * 303.95605 * 8 7 6 34 34 H 1.09003 * 109.46753 * 59.99790 * 11 9 8 35 35 H 1.09000 * 109.46768 * 179.97438 * 11 9 8 36 36 H 1.08992 * 109.47107 * 299.99767 * 11 9 8 37 37 H 0.96998 * 119.99888 * 180.02562 * 15 14 12 38 38 H 0.96998 * 120.00051 * 359.97438 * 22 21 20 39 39 H 0.97001 * 120.00312 * 179.97438 * 22 21 20 40 40 H 0.96697 * 116.99910 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2777 1.0956 0.0000 4 6 3.5838 0.7772 0.0006 5 7 4.7090 1.4882 0.0004 6 6 5.8823 0.8920 0.0006 7 6 7.1255 1.7438 -0.0003 8 7 7.5289 2.0201 -1.3855 9 6 8.7400 2.8506 -1.4254 10 1 8.7250 3.5551 -0.5939 11 6 9.9759 1.9557 -1.3134 12 6 8.7858 3.6098 -2.7264 13 1 7.9946 3.4873 -3.4513 14 6 9.8383 4.4600 -2.9918 15 7 9.8786 5.1221 -4.1273 16 14 11.2078 4.6702 -1.7389 17 1 12.2744 3.6702 -1.9988 18 1 11.7744 6.0385 -1.8499 19 1 10.6634 4.4694 -0.3720 20 7 6.0148 -0.4213 0.0005 21 6 4.9464 -1.2148 0.0007 22 7 5.0851 -2.5916 -0.0050 23 6 3.6792 -0.6215 0.0004 24 6 2.2905 -1.1137 0.0005 25 6 1.8441 -2.5141 0.0006 26 8 1.6595 -3.0933 -1.0521 27 8 1.6395 -3.1563 1.1682 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5141 -0.8898 30 1 -0.3633 -0.5134 0.8901 31 1 6.9224 2.6836 0.5134 32 1 7.9285 1.2151 0.5135 33 1 7.6605 1.1631 -1.9016 34 1 9.9909 1.2511 -2.1449 35 1 10.8745 2.5718 -1.3435 36 1 9.9428 1.4066 -0.3724 37 1 10.6192 5.7200 -4.3141 38 1 5.9696 -2.9899 -0.0096 39 1 4.2980 -3.1585 -0.0044 40 1 1.3458 -4.0762 1.1176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574205453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:18 Heat of formation + Delta-G solvation = -46.462478 kcal Electronic energy + Delta-G solvation = -26317.538730 eV Core-core repulsion = 22326.493418 eV Total energy + Delta-G solvation = -3991.045312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.21292 -41.35375 -41.14888 -38.16968 -37.23039 -36.91847 -34.67861 -34.46868 -33.73857 -32.36216 -31.46858 -28.83777 -27.13842 -26.61269 -25.50973 -25.06667 -23.15790 -22.12632 -21.67317 -20.29298 -19.34943 -19.08547 -18.72441 -18.09689 -18.08017 -17.60106 -16.97453 -16.96660 -16.37406 -16.25628 -15.79573 -15.22002 -15.21684 -15.05515 -14.64301 -14.59871 -14.36974 -14.05723 -13.98574 -13.69840 -13.42413 -13.09871 -12.90831 -12.78613 -12.74688 -12.46866 -12.20869 -11.98713 -11.95293 -11.44464 -11.28077 -11.17830 -10.74387 -10.70118 -10.54909 -9.21830 -9.09156 -8.23221 -6.26561 -0.52328 -0.14791 0.63411 0.68196 0.74751 1.34736 1.41063 1.51435 1.82942 1.95701 2.36947 2.43798 2.76301 2.97769 3.10986 3.11254 3.54794 3.63778 3.76121 3.89420 4.16314 4.29163 4.46002 4.47506 4.52736 4.55727 4.60531 4.66967 4.72520 4.86319 5.01909 5.04654 5.29106 5.41713 5.46801 5.50884 5.68581 5.86237 5.96745 6.41056 6.60865 6.65849 6.78428 6.80297 7.01423 7.37899 8.94603 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.002786 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.368680 B =10048.911551 C =10591.579531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.104 3.896 3 O -0.172 6.172 4 C 0.306 3.694 5 N -0.547 5.547 6 C 0.401 3.599 7 C 0.131 3.869 8 N -0.678 5.678 9 C 0.191 3.809 10 H 0.040 0.960 11 C -0.177 4.177 12 C -0.506 4.506 13 H 0.030 0.970 14 C 0.006 3.994 15 N -0.954 5.954 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.301 1.301 19 H -0.242 1.242 20 N -0.578 5.578 21 C 0.487 3.513 22 N -0.802 5.802 23 C -0.271 4.271 24 C -0.205 4.205 25 C 0.577 3.423 26 O -0.516 6.516 27 O -0.492 6.492 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.337 0.663 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.265 0.735 38 H 0.424 0.576 39 H 0.415 0.585 40 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.010 -20.872 16.409 32.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.066 6.066 4 C 0.125 3.875 5 N -0.276 5.276 6 C 0.132 3.868 7 C 0.001 3.999 8 N -0.309 5.309 9 C 0.082 3.918 10 H 0.058 0.942 11 C -0.236 4.236 12 C -0.545 4.545 13 H 0.048 0.952 14 C -0.190 4.190 15 N -0.595 5.595 16 Si 0.783 3.217 17 H -0.191 1.191 18 H -0.229 1.229 19 H -0.166 1.166 20 N -0.307 5.307 21 C 0.235 3.765 22 N -0.347 5.347 23 C -0.282 4.282 24 C -0.209 4.209 25 C 0.419 3.581 26 O -0.405 6.405 27 O -0.306 6.306 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.258 0.742 39 H 0.247 0.753 40 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -18.710 -19.140 16.000 31.184 hybrid contribution 0.645 -1.526 -0.103 1.660 sum -18.066 -20.666 15.897 31.720 Atomic orbital electron populations 1.21010 0.79218 1.07523 1.06578 1.23574 0.95345 0.80511 0.95171 1.83744 1.13250 1.35123 1.74521 1.19402 0.84753 0.87849 0.95455 1.67117 0.95466 1.41296 1.23748 1.22789 0.91003 0.86410 0.86595 1.20714 0.89378 0.97566 0.92267 1.60406 1.37653 1.22024 1.10800 1.19442 0.85015 0.91464 0.95895 0.94203 1.22719 0.99335 1.00246 1.01278 1.21246 1.06696 1.24040 1.02483 0.95207 1.25867 1.00847 0.94990 0.97297 1.70063 1.33414 1.30044 1.25997 0.85754 0.79203 0.76037 0.80736 1.19128 1.22881 1.16565 1.68050 1.30832 1.05545 1.26286 1.17975 0.86125 0.87375 0.85024 1.42031 1.13498 1.00477 1.78649 1.20257 0.93584 0.95463 1.18877 1.19290 0.90915 0.92401 1.18321 1.19212 0.72548 0.84802 0.81560 1.90998 1.47965 1.67604 1.33892 1.84677 1.79189 1.34116 1.32643 0.87330 0.86908 0.85522 0.88494 0.90383 0.84551 0.92794 0.94247 0.91410 0.92610 0.74242 0.75312 0.69663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.12 71.24 0.72 0.02 16 2 C 0.10 2.02 7.31 25.20 0.18 2.21 16 3 O -0.17 -4.69 10.51 -0.44 0.00 -4.69 16 4 C 0.31 9.95 8.61 84.98 0.73 10.68 16 5 N -0.55 -20.22 10.35 -301.01 -3.11 -23.33 16 6 C 0.40 13.93 7.14 138.75 0.99 14.92 16 7 C 0.13 4.58 5.89 85.56 0.50 5.08 16 8 N -0.68 -28.75 6.22 -499.44 -3.11 -31.86 16 9 C 0.19 8.92 2.17 44.17 0.10 9.01 16 10 H 0.04 1.86 6.86 -2.39 -0.02 1.84 16 11 C -0.18 -7.13 8.64 71.98 0.62 -6.51 16 12 C -0.51 -29.86 9.42 25.60 0.24 -29.62 16 13 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 14 C 0.01 0.37 5.45 84.66 0.46 0.84 16 15 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 16 Si 0.96 44.97 24.37 68.60 1.67 46.64 16 17 H -0.27 -11.76 6.87 99.48 0.68 -11.07 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 19 H -0.24 -10.30 6.53 99.48 0.65 -9.65 16 20 N -0.58 -17.77 10.36 -185.23 -1.92 -19.69 16 21 C 0.49 13.00 7.86 133.26 1.05 14.05 16 22 N -0.80 -14.07 9.05 -54.95 -0.50 -14.56 16 23 C -0.27 -7.52 6.35 -20.00 -0.13 -7.64 16 24 C -0.20 -4.39 6.18 -19.07 -0.12 -4.51 16 25 C 0.58 9.26 6.40 70.11 0.45 9.71 16 26 O -0.52 -10.77 17.90 19.63 0.35 -10.42 16 27 O -0.49 -3.96 13.44 -57.26 -0.77 -4.73 16 28 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 3.38 8.05 -2.39 -0.02 3.36 16 32 H 0.08 2.35 7.44 -2.39 -0.02 2.34 16 33 H 0.34 13.90 8.47 -89.69 -0.76 13.14 16 34 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 35 H 0.04 1.64 3.27 -2.39 -0.01 1.63 16 36 H 0.07 2.22 7.45 -2.39 -0.02 2.20 16 37 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.42 5.81 8.95 -92.71 -0.83 4.98 16 39 H 0.42 5.85 7.25 -92.71 -0.67 5.17 16 40 H 0.44 -1.11 9.11 -74.06 -0.67 -1.79 16 Total: -1.00 -82.78 343.96 -3.13 -85.91 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.85 Total: 19.56 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 5.80 Total: 18.23 kcal Atomic # 7 Polarization: -142.16 SS G_CDS: -8.34 Total: -150.50 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.42 Total: -19.84 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.64 kcal Total: -82.78 -3.13 -85.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574205453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.449 kcal (2) G-P(sol) polarization free energy of solvation -82.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds