Wall clock time and date at job start Sat Apr 11 2020 00:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00393 * 2 1 4 4 H 1.48502 * 109.47136 * 270.00144 * 3 2 1 5 5 H 1.48503 * 109.47012 * 29.99988 * 3 2 1 6 6 H 1.48499 * 109.47189 * 150.00088 * 3 2 1 7 7 C 1.37878 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00165 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47074 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47123 * 180.02562 * 11 10 9 13 13 C 1.46707 * 111.00001 * 50.13184 * 12 11 10 14 14 C 1.53381 * 108.26531 * 174.24394 * 13 12 11 15 15 N 1.46713 * 108.25911 * 293.21918 * 14 13 12 16 16 C 1.46901 * 110.99807 * 174.18927 * 15 14 13 17 17 C 1.53006 * 117.49658 * 133.45169 * 16 15 14 18 18 C 1.52995 * 117.49715 * 64.83324 * 16 15 14 19 19 C 1.40011 * 112.11403 * 49.41962 * 15 14 13 20 20 C 1.39213 * 117.92160 * 162.13269 * 19 15 14 21 21 C 1.38046 * 120.41771 * 179.76360 * 20 19 15 22 22 C 1.38358 * 120.00658 * 359.95527 * 21 20 19 23 23 Cl 1.73598 * 119.99926 * 180.09376 * 22 21 20 24 24 C 1.38128 * 119.99543 * 0.11628 * 22 21 20 25 25 C 1.38940 * 122.48308 * 342.07416 * 19 15 14 26 26 H 0.97005 * 119.99898 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46808 * 59.99972 * 9 7 2 28 28 H 1.08995 * 109.46826 * 300.00572 * 9 7 2 29 29 H 1.09003 * 109.47086 * 60.00419 * 10 9 7 30 30 H 1.08995 * 109.47973 * 300.00147 * 10 9 7 31 31 H 1.08994 * 109.46962 * 59.99965 * 11 10 9 32 32 H 1.09002 * 109.46997 * 299.99945 * 11 10 9 33 33 H 1.08993 * 109.70847 * 54.54620 * 13 12 11 34 34 H 1.09006 * 109.70230 * 293.93025 * 13 12 11 35 35 H 1.08997 * 109.70695 * 173.53394 * 14 13 12 36 36 H 1.08994 * 109.70700 * 52.91289 * 14 13 12 37 37 H 1.09002 * 115.55329 * 279.15456 * 16 15 14 38 38 H 1.08995 * 117.49803 * 0.02562 * 17 16 15 39 39 H 1.08998 * 117.49677 * 145.01839 * 17 16 15 40 40 H 1.09005 * 117.50129 * 214.97489 * 18 16 15 41 41 H 1.09005 * 117.50083 * 359.96991 * 18 16 15 42 42 H 1.08004 * 119.79019 * 359.74323 * 20 19 15 43 43 H 1.07998 * 119.99471 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.80456 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 7 6.0409 -4.0218 -0.0014 13 6 5.3884 -4.8097 -1.0530 14 6 6.0450 -6.1953 -1.0930 15 7 7.4309 -6.0343 -1.5468 16 6 8.1592 -7.3081 -1.4763 17 6 8.9988 -7.7100 -2.6907 18 6 7.6894 -8.4420 -2.3896 19 6 8.1042 -5.0314 -0.8389 20 6 9.4955 -5.0217 -0.8867 21 6 10.2112 -4.0533 -0.2118 22 6 9.5462 -3.0835 0.5173 23 17 10.4464 -1.8643 1.3640 24 6 8.1660 -3.0858 0.5719 25 6 7.4361 -4.0605 -0.1031 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6806 0.8889 28 1 3.8744 -0.6802 -0.8910 29 1 3.6576 -3.1507 -0.8908 30 1 3.6584 -3.1504 0.8891 31 1 5.9147 -2.1230 0.8890 32 1 5.9148 -2.1231 -0.8910 33 1 5.5157 -4.3148 -2.0157 34 1 4.3264 -4.9127 -0.8296 35 1 5.5037 -6.8387 -1.7865 36 1 6.0336 -6.6364 -0.0963 37 1 8.5373 -7.5795 -0.4906 38 1 9.0109 -7.0291 -3.5417 39 1 9.9294 -8.2458 -2.5040 40 1 7.7587 -9.4596 -2.0050 41 1 6.8395 -8.2431 -3.0425 42 1 10.0181 -5.7768 -1.4551 43 1 11.2904 -4.0524 -0.2531 44 1 7.6500 -2.3277 1.1422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360957037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:40 Heat of formation + Delta-G solvation = 41.986695 kcal Electronic energy + Delta-G solvation = -24505.483896 eV Core-core repulsion = 21062.523536 eV Total energy + Delta-G solvation = -3442.960360 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09537 -38.99420 -38.54503 -37.14976 -36.00358 -35.12241 -33.53071 -31.51629 -31.04007 -29.43218 -27.18391 -25.02313 -24.72047 -23.50935 -23.06968 -22.05689 -21.21253 -20.76395 -18.91908 -18.67462 -17.80222 -17.52237 -16.68611 -16.33481 -16.30617 -15.85685 -15.80909 -14.99299 -14.92184 -14.89898 -14.67287 -14.32333 -14.11320 -13.89788 -13.71778 -13.21293 -13.16394 -13.02696 -12.76859 -12.59575 -12.39519 -12.32415 -12.02548 -11.92029 -11.84624 -11.65683 -11.57970 -11.45333 -11.30679 -11.09416 -10.81716 -10.77307 -10.57597 -9.29908 -8.40480 -8.30433 -6.34497 0.15271 0.27539 1.18156 1.35128 1.36998 1.48773 2.26593 2.35147 2.62948 2.78307 2.86372 3.05145 3.58907 3.66062 3.88961 3.93353 4.04012 4.05683 4.13033 4.16640 4.23658 4.28749 4.33174 4.37828 4.49677 4.60924 4.63827 4.74729 4.80415 4.82965 4.86239 4.89053 4.92265 5.02780 5.06642 5.08867 5.27763 5.31189 5.43437 5.49487 5.53095 5.63439 5.76212 5.95461 6.04171 6.26333 6.27717 6.73372 7.30211 8.86299 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.003590 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.955526 B = 7796.710735 C = 9954.548761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.531 4.531 8 H 0.034 0.966 9 C -0.009 4.009 10 C -0.092 4.092 11 C 0.067 3.933 12 N -0.493 5.493 13 C 0.047 3.953 14 C 0.061 3.939 15 N -0.467 5.467 16 C -0.013 4.013 17 C -0.155 4.155 18 C -0.158 4.158 19 C 0.077 3.923 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.042 4.042 23 Cl -0.074 7.074 24 C -0.140 4.140 25 C 0.081 3.919 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.852 -15.872 -3.566 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.052 0.948 9 C -0.047 4.047 10 C -0.130 4.130 11 C -0.059 4.059 12 N -0.207 5.207 13 C -0.080 4.080 14 C -0.065 4.065 15 N -0.181 5.181 16 C -0.119 4.119 17 C -0.192 4.192 18 C -0.195 4.195 19 C -0.024 4.024 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.070 4.070 23 Cl -0.045 7.045 24 C -0.162 4.162 25 C -0.020 4.020 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.174 0.826 43 H 0.172 0.828 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.475 -15.801 -3.572 29.351 hybrid contribution -0.365 1.301 0.332 1.391 sum 24.110 -14.500 -3.240 28.321 Atomic orbital electron populations 1.70064 1.08276 1.28153 1.52690 1.25999 0.95598 1.03471 0.94148 0.85685 0.79581 0.78367 0.79209 1.19194 1.20975 1.16967 1.21461 0.91983 0.93149 1.50307 0.94804 1.19471 0.94029 0.94657 0.96572 1.21399 0.92464 0.97632 1.01482 1.22306 0.95729 0.86337 1.01501 1.58893 1.02592 1.13459 1.45763 1.22461 0.99964 0.93365 0.92187 1.22305 0.87069 0.96443 1.00673 1.58655 1.02786 1.05394 1.51307 1.22520 1.04254 0.88917 0.96187 1.23208 0.95801 1.02456 0.97735 1.23168 0.98889 0.96101 1.01350 1.18866 0.93438 0.95641 0.94468 1.21058 0.91020 1.00275 1.00873 1.21013 1.01269 0.93614 0.97489 1.20634 0.91427 0.94276 1.00630 1.98354 1.74668 1.54716 1.76785 1.20858 0.92619 0.99965 1.02762 1.18737 0.88634 0.97150 0.97507 0.92490 0.96090 0.96416 0.92389 0.92572 0.89844 0.94026 0.93247 0.88102 0.86899 0.92769 0.88381 0.88672 0.86355 0.86600 0.88428 0.82576 0.82772 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.76 16 2 C 0.00 0.27 5.47 84.66 0.46 0.73 16 3 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.09 16 7 C -0.53 -30.71 9.66 25.60 0.25 -30.47 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.09 -3.52 4.59 30.59 0.14 -3.38 16 11 C 0.07 2.13 4.40 86.30 0.38 2.51 16 12 N -0.49 -14.32 4.75 -694.41 -3.30 -17.62 16 13 C 0.05 1.21 4.80 86.47 0.41 1.62 16 14 C 0.06 1.27 5.51 86.47 0.48 1.75 16 15 N -0.47 -9.52 4.76 -670.49 -3.19 -12.71 16 16 C -0.01 -0.18 3.75 44.92 0.17 -0.01 16 17 C -0.15 -1.65 9.38 30.60 0.29 -1.37 16 18 C -0.16 -1.71 9.95 30.59 0.30 -1.41 16 19 C 0.08 1.80 5.79 38.24 0.22 2.02 16 20 C -0.11 -2.14 9.04 22.46 0.20 -1.94 16 21 C -0.11 -2.20 9.82 22.25 0.22 -1.98 16 22 C -0.04 -0.97 6.31 22.27 0.14 -0.83 16 23 Cl -0.07 -1.63 28.95 -2.72 -0.08 -1.70 16 24 C -0.14 -3.73 8.83 22.48 0.20 -3.54 16 25 C 0.08 2.21 5.77 38.25 0.22 2.43 16 26 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 27 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 28 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 29 H 0.06 2.20 6.45 -2.39 -0.02 2.18 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 2.61 6.38 -2.39 -0.02 2.60 16 32 H 0.04 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 34 H 0.10 2.66 6.60 -2.38 -0.02 2.65 16 35 H 0.11 1.87 7.65 -2.39 -0.02 1.86 16 36 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 37 H 0.10 1.46 8.13 -2.39 -0.02 1.44 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.10 1.16 7.87 -2.38 -0.02 1.14 16 42 H 0.16 2.27 6.14 -2.91 -0.02 2.25 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.13 3.60 6.13 -2.91 -0.02 3.58 16 Total: -1.00 -66.62 359.20 0.76 -65.86 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.94 Total: 13.63 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.21 Total: -34.16 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -6.19 Total: -90.09 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.70 kcal Total: -66.62 0.76 -65.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360957037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.848 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds