Wall clock time and date at job start Sat Apr 11 2020 00:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.87474 * 2 1 4 4 O 1.43747 * 109.87711 * 238.84110 * 2 1 3 5 5 C 1.44383 * 106.97542 * 267.08581 * 4 2 1 6 6 C 1.55225 * 103.56471 * 320.01401 * 5 4 2 7 7 C 1.54103 * 109.88092 * 121.00990 * 2 1 3 8 8 O 1.42898 * 110.48598 * 358.58229 * 7 2 1 9 9 C 1.53006 * 110.48610 * 236.06952 * 7 2 1 10 10 N 1.46500 * 109.46835 * 186.84630 * 9 7 2 11 11 C 1.34780 * 119.99812 * 180.02562 * 10 9 7 12 12 O 1.21581 * 119.99897 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99807 * 179.97438 * 11 10 9 14 14 C 1.39237 * 120.00019 * 185.31079 * 13 11 10 15 15 C 1.39478 * 119.83956 * 212.69162 * 14 13 11 16 16 C 1.36369 * 120.17409 * 179.97438 * 15 14 13 17 17 C 1.40867 * 119.82647 * 0.02562 * 16 15 14 18 18 C 1.41158 * 120.16155 * 180.02562 * 17 16 15 19 19 H 1.08010 * 119.99714 * 205.93645 * 18 17 16 20 20 C 1.39890 * 120.00225 * 25.94089 * 18 17 16 21 21 N 1.30875 * 119.99922 * 16.64084 * 20 18 17 22 22 Si 1.86802 * 120.00119 * 196.64081 * 20 18 17 23 23 H 1.48506 * 109.46863 * 84.98878 * 22 20 18 24 24 H 1.48498 * 109.47242 * 204.98361 * 22 20 18 25 25 H 1.48497 * 109.47110 * 324.99088 * 22 20 18 26 26 C 1.40873 * 119.67627 * 0.27690 * 17 16 15 27 27 C 1.36380 * 119.82074 * 359.44168 * 26 17 16 28 28 H 1.09006 * 109.46563 * 298.98858 * 1 2 3 29 29 H 1.08997 * 109.47416 * 58.99014 * 1 2 3 30 30 H 1.08997 * 109.47196 * 178.99294 * 1 2 3 31 31 H 1.09007 * 110.61448 * 78.43975 * 5 4 2 32 32 H 1.09002 * 110.62119 * 201.27717 * 5 4 2 33 33 H 1.09001 * 110.88947 * 278.74209 * 6 5 4 34 34 H 1.09008 * 111.01758 * 155.07242 * 6 5 4 35 35 H 0.96705 * 113.99614 * 178.15553 * 8 7 2 36 36 H 1.08989 * 109.47135 * 66.84292 * 9 7 2 37 37 H 1.08999 * 109.46717 * 306.84146 * 9 7 2 38 38 H 0.97000 * 120.00389 * 359.97438 * 10 9 7 39 39 H 0.96999 * 120.00285 * 5.31185 * 13 11 10 40 40 H 1.08002 * 119.91195 * 359.95747 * 15 14 13 41 41 H 1.07999 * 120.08892 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00217 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.08711 * 179.72245 * 26 17 16 44 44 H 1.07993 * 119.91068 * 180.27830 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 -1.1568 5 6 2.2281 -2.0724 -0.7620 6 6 2.8317 -1.9534 0.6631 7 6 2.0540 -0.7466 1.2421 8 8 0.9656 -1.1950 2.0523 9 6 2.9885 0.1534 2.0532 10 7 3.6001 -0.6249 3.1332 11 6 4.4649 -0.0353 3.9824 12 8 4.7377 1.1422 3.8518 13 7 5.0271 -0.7512 4.9763 14 6 5.8332 -0.1193 5.9195 15 6 6.9092 -0.8045 6.4835 16 6 7.7034 -0.1921 7.4075 17 6 7.4345 1.1361 7.7924 18 6 8.2523 1.7771 8.7477 19 1 7.8530 2.5815 9.3477 20 6 9.5801 1.3705 8.9174 21 7 10.1641 0.6431 7.9995 22 14 10.5195 1.8658 10.4542 23 1 10.2329 0.8976 11.5431 24 1 11.9760 1.8684 10.1648 25 1 10.0962 3.2251 10.8765 26 6 6.3421 1.8196 7.2231 27 6 5.5603 1.1957 6.2960 28 1 -0.3633 0.4981 0.8990 29 1 -0.3634 0.5294 -0.8807 30 1 -0.3633 -1.0275 -0.0181 31 1 1.2813 -2.6118 -0.7322 32 1 2.9273 -2.5640 -1.4385 33 1 3.8999 -1.7417 0.6162 34 1 2.6404 -2.8550 1.2452 35 1 1.2373 -1.6960 2.8335 36 1 2.4187 0.9795 2.4782 37 1 3.7690 0.5473 1.4022 38 1 3.3821 -1.5643 3.2376 39 1 4.8703 -1.7067 5.0346 40 1 7.1137 -1.8230 6.1879 41 1 8.5360 -0.7241 7.8436 42 1 11.0848 0.3614 8.1170 43 1 6.1272 2.8364 7.5166 44 1 4.7252 1.7199 5.8553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278843978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:14:59 Heat of formation + Delta-G solvation = -99.282505 kcal Electronic energy + Delta-G solvation = -26468.696632 eV Core-core repulsion = 22578.901216 eV Total energy + Delta-G solvation = -3889.795417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81879 -39.73854 -37.54072 -36.76667 -34.61166 -34.17215 -32.94413 -31.68113 -31.35676 -29.58819 -29.02172 -27.87454 -25.15138 -24.16544 -22.52406 -21.58790 -20.91571 -20.82173 -20.10120 -18.32181 -17.41908 -17.26705 -17.03388 -16.53472 -16.02196 -15.36436 -15.23309 -14.86303 -14.80432 -14.22020 -14.02706 -13.88295 -13.81941 -13.33056 -13.12508 -13.01047 -12.68389 -12.31561 -12.19198 -12.08985 -11.86592 -11.83913 -11.55445 -11.34075 -11.13575 -11.01362 -10.97429 -10.74533 -10.42896 -10.12158 -10.02942 -9.58327 -9.55251 -9.21599 -9.05337 -8.92652 -7.53661 -6.95008 -6.72528 -4.28478 2.64600 2.86938 3.06975 3.10091 3.11134 3.14954 3.47005 3.57042 3.68345 3.94033 4.03475 4.13971 4.35776 4.61387 4.64813 4.72913 4.80879 5.00729 5.08093 5.21918 5.29236 5.39545 5.50654 5.56985 5.65972 5.70583 5.74234 6.02271 6.18302 6.36852 6.42725 6.46061 6.73938 6.77181 7.04339 7.10904 7.14356 7.26824 7.34299 7.61739 7.85120 7.95581 8.05472 8.29382 8.43529 8.61137 8.89840 8.90554 9.07145 10.19887 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.002166 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.329182 B =12923.467698 C =13127.308295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.089 3.911 3 H 0.107 0.893 4 O -0.367 6.367 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.095 3.905 8 O -0.542 6.542 9 C 0.123 3.877 10 N -0.754 5.754 11 C 0.694 3.306 12 O -0.574 6.574 13 N -0.664 5.664 14 C 0.011 3.989 15 C -0.116 4.116 16 C -0.152 4.152 17 C 0.104 3.896 18 C -0.459 4.459 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.795 5.795 22 Si 0.909 3.091 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.214 4.214 27 C -0.078 4.078 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.377 0.623 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.388 0.612 39 H 0.390 0.610 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.280 0.720 43 H 0.095 0.905 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 -8.805 -12.405 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.124 0.876 4 O -0.286 6.286 5 C -0.027 4.027 6 C -0.222 4.222 7 C 0.053 3.947 8 O -0.348 6.348 9 C -0.002 4.002 10 N -0.412 5.412 11 C 0.395 3.605 12 O -0.450 6.450 13 N -0.310 5.310 14 C -0.081 4.081 15 C -0.136 4.136 16 C -0.172 4.172 17 C 0.101 3.899 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.143 4.143 21 N -0.421 5.421 22 Si 0.734 3.266 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.234 4.234 27 C -0.098 4.098 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.221 0.779 39 H 0.223 0.777 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.125 -7.386 -13.265 20.737 hybrid contribution 0.762 -1.199 1.290 1.919 sum -13.363 -8.584 -11.975 19.892 Atomic orbital electron populations 1.21939 0.94116 1.02964 1.02200 1.22671 0.95429 0.96372 0.82457 0.87574 1.88968 1.86119 1.20895 1.32619 1.23533 1.00011 0.84407 0.94726 1.23895 1.01700 0.98687 0.97880 1.22791 0.86539 0.93596 0.91769 1.86608 1.32476 1.75489 1.40212 1.21761 0.95802 0.94011 0.88669 1.45015 1.49437 1.13323 1.33409 1.15972 0.79628 0.85554 0.79360 1.90939 1.65215 1.14560 1.74289 1.42095 1.51184 1.10394 1.27316 1.16960 0.96899 0.95333 0.98943 1.20173 0.94583 0.98356 1.00501 1.20863 1.00418 0.95125 1.00768 1.17660 0.90762 0.91051 0.90388 1.19544 0.95150 1.16489 1.17658 0.90397 1.25914 0.98120 0.93565 0.96744 1.69844 1.12945 1.28335 1.30929 0.86308 0.78243 0.80152 0.81902 1.19243 1.20394 1.18681 1.20663 1.01361 0.98965 1.02406 1.20279 0.99266 0.93547 0.96684 0.90895 0.92262 0.91982 0.91857 0.88690 0.89033 0.89407 0.77471 0.90450 0.90376 0.77881 0.77681 0.89273 0.86163 0.90902 0.88710 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.56 37.16 0.32 -0.99 16 2 C 0.09 0.81 3.76 -26.16 -0.10 0.71 16 3 H 0.11 0.93 7.69 -51.93 -0.40 0.53 16 4 O -0.37 -3.71 11.19 -35.23 -0.39 -4.10 16 5 C 0.05 0.37 7.67 38.34 0.29 0.67 16 6 C -0.18 -1.27 5.72 -24.60 -0.14 -1.41 16 7 C 0.09 0.77 1.04 -89.09 -0.09 0.68 16 8 O -0.54 -4.19 11.22 -35.23 -0.40 -4.58 16 9 C 0.12 1.31 4.54 -4.04 -0.02 1.29 16 10 N -0.75 -8.46 5.12 -65.23 -0.33 -8.79 16 11 C 0.69 11.89 8.29 -86.91 -0.72 11.17 16 12 O -0.57 -12.66 13.95 5.29 0.07 -12.58 16 13 N -0.66 -11.35 5.32 -14.10 -0.07 -11.42 16 14 C 0.01 0.25 6.30 -83.57 -0.53 -0.28 16 15 C -0.12 -2.62 9.89 -39.79 -0.39 -3.02 16 16 C -0.15 -3.89 8.62 -39.26 -0.34 -4.23 16 17 C 0.10 2.80 5.56 -106.80 -0.59 2.20 16 18 C -0.46 -12.21 9.04 -37.86 -0.34 -12.55 16 19 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 20 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 21 N -0.79 -20.57 10.97 55.54 0.61 -19.96 16 22 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.21 -5.47 9.74 -39.25 -0.38 -5.85 16 27 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 28 H 0.07 0.62 7.85 -51.93 -0.41 0.22 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 31 H 0.06 0.44 8.11 -51.92 -0.42 0.01 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 34 H 0.09 0.44 8.08 -51.92 -0.42 0.02 16 35 H 0.38 1.91 8.25 45.56 0.38 2.29 16 36 H 0.08 0.93 8.14 -51.94 -0.42 0.51 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.39 2.95 7.41 -40.82 -0.30 2.64 16 39 H 0.39 5.04 8.83 -40.82 -0.36 4.68 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.10 2.48 6.34 -52.49 -0.33 2.15 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -32.42 360.55 -9.08 -41.50 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.50 Total: 12.94 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.47 Total: -12.05 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.20 Total: -40.17 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.72 Total: -21.27 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.42 -9.08 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278843978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.787 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds