Wall clock time and date at job start Sat Apr 11 2020 00:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.87474 * 2 1 4 4 O 1.43747 * 109.87711 * 238.84110 * 2 1 3 5 5 C 1.44383 * 106.97542 * 267.08581 * 4 2 1 6 6 C 1.55225 * 103.56471 * 320.01401 * 5 4 2 7 7 C 1.54103 * 109.88092 * 121.00990 * 2 1 3 8 8 O 1.42898 * 110.48598 * 358.58229 * 7 2 1 9 9 C 1.53006 * 110.48610 * 236.06952 * 7 2 1 10 10 N 1.46500 * 109.46835 * 186.84630 * 9 7 2 11 11 C 1.34780 * 119.99812 * 180.02562 * 10 9 7 12 12 O 1.21581 * 119.99897 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99807 * 179.97438 * 11 10 9 14 14 C 1.39237 * 120.00019 * 185.31079 * 13 11 10 15 15 C 1.39478 * 119.83956 * 212.69162 * 14 13 11 16 16 C 1.36369 * 120.17409 * 179.97438 * 15 14 13 17 17 C 1.40867 * 119.82647 * 0.02562 * 16 15 14 18 18 C 1.41158 * 120.16155 * 180.02562 * 17 16 15 19 19 H 1.08010 * 119.99714 * 205.93645 * 18 17 16 20 20 C 1.39890 * 120.00225 * 25.94089 * 18 17 16 21 21 N 1.30875 * 119.99922 * 16.64084 * 20 18 17 22 22 Si 1.86802 * 120.00119 * 196.64081 * 20 18 17 23 23 H 1.48506 * 109.46863 * 84.98878 * 22 20 18 24 24 H 1.48498 * 109.47242 * 204.98361 * 22 20 18 25 25 H 1.48497 * 109.47110 * 324.99088 * 22 20 18 26 26 C 1.40873 * 119.67627 * 0.27690 * 17 16 15 27 27 C 1.36380 * 119.82074 * 359.44168 * 26 17 16 28 28 H 1.09006 * 109.46563 * 298.98858 * 1 2 3 29 29 H 1.08997 * 109.47416 * 58.99014 * 1 2 3 30 30 H 1.08997 * 109.47196 * 178.99294 * 1 2 3 31 31 H 1.09007 * 110.61448 * 78.43975 * 5 4 2 32 32 H 1.09002 * 110.62119 * 201.27717 * 5 4 2 33 33 H 1.09001 * 110.88947 * 278.74209 * 6 5 4 34 34 H 1.09008 * 111.01758 * 155.07242 * 6 5 4 35 35 H 0.96705 * 113.99614 * 178.15553 * 8 7 2 36 36 H 1.08989 * 109.47135 * 66.84292 * 9 7 2 37 37 H 1.08999 * 109.46717 * 306.84146 * 9 7 2 38 38 H 0.97000 * 120.00389 * 359.97438 * 10 9 7 39 39 H 0.96999 * 120.00285 * 5.31185 * 13 11 10 40 40 H 1.08002 * 119.91195 * 359.95747 * 15 14 13 41 41 H 1.07999 * 120.08892 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00217 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.08711 * 179.72245 * 26 17 16 44 44 H 1.07993 * 119.91068 * 180.27830 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 -1.1568 5 6 2.2281 -2.0724 -0.7620 6 6 2.8317 -1.9534 0.6631 7 6 2.0540 -0.7466 1.2421 8 8 0.9656 -1.1950 2.0523 9 6 2.9885 0.1534 2.0532 10 7 3.6001 -0.6249 3.1332 11 6 4.4649 -0.0353 3.9824 12 8 4.7377 1.1422 3.8518 13 7 5.0271 -0.7512 4.9763 14 6 5.8332 -0.1193 5.9195 15 6 6.9092 -0.8045 6.4835 16 6 7.7034 -0.1921 7.4075 17 6 7.4345 1.1361 7.7924 18 6 8.2523 1.7771 8.7477 19 1 7.8530 2.5815 9.3477 20 6 9.5801 1.3705 8.9174 21 7 10.1641 0.6431 7.9995 22 14 10.5195 1.8658 10.4542 23 1 10.2329 0.8976 11.5431 24 1 11.9760 1.8684 10.1648 25 1 10.0962 3.2251 10.8765 26 6 6.3421 1.8196 7.2231 27 6 5.5603 1.1957 6.2960 28 1 -0.3633 0.4981 0.8990 29 1 -0.3634 0.5294 -0.8807 30 1 -0.3633 -1.0275 -0.0181 31 1 1.2813 -2.6118 -0.7322 32 1 2.9273 -2.5640 -1.4385 33 1 3.8999 -1.7417 0.6162 34 1 2.6404 -2.8550 1.2452 35 1 1.2373 -1.6960 2.8335 36 1 2.4187 0.9795 2.4782 37 1 3.7690 0.5473 1.4022 38 1 3.3821 -1.5643 3.2376 39 1 4.8703 -1.7067 5.0346 40 1 7.1137 -1.8230 6.1879 41 1 8.5360 -0.7241 7.8436 42 1 11.0848 0.3614 8.1170 43 1 6.1272 2.8364 7.5166 44 1 4.7252 1.7199 5.8553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278843978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:14:58 Heat of formation + Delta-G solvation = -123.600565 kcal Electronic energy + Delta-G solvation = -26469.751143 eV Core-core repulsion = 22578.901216 eV Total energy + Delta-G solvation = -3890.849927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73624 -40.98463 -39.22786 -37.60197 -36.21673 -35.40398 -34.66445 -32.36890 -32.10851 -31.45475 -30.73213 -28.86736 -26.74698 -25.17076 -23.59218 -23.05180 -22.47775 -21.72947 -21.45911 -19.64406 -19.16078 -18.53156 -17.76535 -17.58158 -17.07043 -16.86992 -16.61654 -16.05207 -15.71805 -15.52790 -15.39892 -15.07383 -14.69126 -14.54620 -14.44635 -14.09575 -13.96706 -13.74105 -13.67440 -13.25039 -13.10143 -12.84041 -12.79848 -12.76010 -12.50232 -12.47437 -12.13727 -11.83679 -11.67009 -11.42457 -11.25474 -11.08288 -11.03113 -10.72518 -10.68369 -10.20603 -9.45471 -8.80028 -8.57645 -6.25338 0.86393 1.15541 1.40087 1.48862 1.52951 1.67190 2.17928 2.23583 2.77618 2.84208 2.97394 3.26630 3.41268 3.44864 3.74277 3.79552 4.08241 4.22605 4.33640 4.38981 4.41675 4.51276 4.57710 4.61872 4.70219 4.81128 4.92940 4.94012 5.03133 5.06509 5.11601 5.16437 5.30553 5.32255 5.35843 5.45907 5.65281 5.78369 5.82289 6.04480 6.10875 6.21669 6.39937 6.66106 6.67430 6.95059 7.01713 7.12983 7.63739 8.35598 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.002166 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.329182 B =12923.467698 C =13127.308295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 H 0.102 0.898 4 O -0.388 6.388 5 C 0.044 3.956 6 C -0.178 4.178 7 C 0.109 3.891 8 O -0.546 6.546 9 C 0.125 3.875 10 N -0.723 5.723 11 C 0.693 3.307 12 O -0.625 6.625 13 N -0.654 5.654 14 C 0.030 3.970 15 C -0.113 4.113 16 C -0.169 4.169 17 C 0.072 3.928 18 C -0.497 4.497 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.826 5.826 22 Si 0.984 3.016 23 H -0.259 1.259 24 H -0.268 1.268 25 H -0.262 1.262 26 C -0.232 4.232 27 C -0.090 4.090 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.390 0.610 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.412 0.588 39 H 0.415 0.585 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.289 0.711 43 H 0.092 0.908 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 -11.011 -12.809 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.120 0.880 4 O -0.308 6.308 5 C -0.032 4.032 6 C -0.216 4.216 7 C 0.067 3.933 8 O -0.354 6.354 9 C 0.000 4.000 10 N -0.382 5.382 11 C 0.394 3.606 12 O -0.505 6.505 13 N -0.302 5.302 14 C -0.064 4.064 15 C -0.133 4.133 16 C -0.189 4.189 17 C 0.070 3.930 18 C -0.527 4.527 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.452 5.452 22 Si 0.805 3.195 23 H -0.183 1.183 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.253 4.253 27 C -0.110 4.110 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.241 0.759 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.249 0.751 39 H 0.252 0.748 40 H 0.144 0.856 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.763 -9.679 -13.700 22.345 hybrid contribution 0.796 -0.565 1.246 1.583 sum -13.967 -10.244 -12.454 21.333 Atomic orbital electron populations 1.21876 0.93661 1.02894 1.02184 1.22731 0.95800 0.96422 0.82743 0.88045 1.88949 1.86287 1.22316 1.33238 1.23726 1.00851 0.83364 0.95275 1.23891 1.00913 0.98931 0.97856 1.22534 0.86123 0.93605 0.91012 1.86609 1.32213 1.75673 1.40884 1.21795 0.95675 0.94369 0.88183 1.44659 1.47256 1.14375 1.31896 1.16146 0.79891 0.84868 0.79706 1.90920 1.66917 1.17038 1.75597 1.41826 1.50448 1.11544 1.26424 1.16970 0.96501 0.94496 0.98417 1.20440 0.93700 0.99879 0.99276 1.20886 1.01057 0.94907 1.02088 1.17981 0.91566 0.92065 0.91404 1.19759 0.96477 1.17594 1.18838 0.90893 1.26742 0.98396 0.93251 0.99643 1.69882 1.13694 1.29178 1.32492 0.85186 0.76961 0.79744 0.77614 1.18313 1.19287 1.18610 1.20784 1.01954 0.99208 1.03309 1.20376 0.99254 0.94776 0.96580 0.91117 0.92083 0.91999 0.91037 0.87494 0.89683 0.86734 0.75913 0.91844 0.91663 0.75126 0.74760 0.85633 0.87194 0.90083 0.88998 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.56 71.98 0.62 -1.71 16 2 C 0.08 1.38 3.76 30.97 0.12 1.49 16 3 H 0.10 1.76 7.69 -2.39 -0.02 1.74 16 4 O -0.39 -7.32 11.19 -148.98 -1.67 -8.99 16 5 C 0.04 0.55 7.67 72.75 0.56 1.11 16 6 C -0.18 -1.91 5.72 31.97 0.18 -1.73 16 7 C 0.11 1.55 1.04 -9.80 -0.01 1.54 16 8 O -0.55 -6.86 11.22 -148.98 -1.67 -8.53 16 9 C 0.12 2.49 4.54 86.38 0.39 2.88 16 10 N -0.72 -14.41 5.12 -478.54 -2.45 -16.86 16 11 C 0.69 22.56 8.29 179.05 1.48 24.05 16 12 O -0.62 -27.44 13.95 -3.97 -0.06 -27.50 16 13 N -0.65 -20.75 5.32 -316.78 -1.68 -22.43 16 14 C 0.03 1.31 6.30 38.57 0.24 1.55 16 15 C -0.11 -4.97 9.89 22.13 0.22 -4.75 16 16 C -0.17 -8.78 8.62 22.48 0.19 -8.59 16 17 C 0.07 4.02 5.56 -21.27 -0.12 3.90 16 18 C -0.50 -27.40 9.04 23.39 0.21 -27.19 16 19 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 20 C 0.03 1.74 5.15 85.24 0.44 2.18 16 21 N -0.83 -43.33 10.97 21.82 0.24 -43.09 16 22 Si 0.98 38.46 29.59 68.60 2.03 40.49 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 26 C -0.23 -12.33 9.74 22.48 0.22 -12.11 16 27 C -0.09 -4.38 8.57 22.14 0.19 -4.19 16 28 H 0.07 1.13 7.85 -2.38 -0.02 1.11 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.96 7.88 -2.39 -0.02 0.94 16 31 H 0.07 0.78 8.11 -2.38 -0.02 0.76 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.08 7.87 -2.39 -0.02 1.06 16 34 H 0.11 0.63 8.08 -2.38 -0.02 0.61 16 35 H 0.39 2.47 8.25 -74.05 -0.61 1.86 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.41 4.60 7.41 -92.71 -0.69 3.91 16 39 H 0.42 9.10 8.83 -92.71 -0.82 8.29 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.11 5.86 6.22 -2.91 -0.02 5.84 16 42 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 43 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.10 4.96 6.34 -2.91 -0.02 4.94 16 Total: -1.00 -72.75 360.55 -1.39 -74.14 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -1.06 Total: 34.34 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.94 Total: -21.56 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -3.90 Total: -82.39 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -3.39 Total: -45.02 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -72.75 -1.39 -74.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278843978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.465 kcal (2) G-P(sol) polarization free energy of solvation -72.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds