Wall clock time and date at job start Sat Apr 11 2020 00:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 O 1.42896 * 109.47430 * 180.02562 * 3 2 1 5 5 C 1.35960 * 117.00334 * 180.02562 * 4 3 2 6 6 C 1.38554 * 120.08453 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.01619 * 180.02562 * 6 5 4 8 8 C 1.38300 * 120.19810 * 359.97438 * 7 6 5 9 9 C 1.38172 * 120.17325 * 0.02562 * 8 7 6 10 10 C 1.38794 * 119.97462 * 359.97438 * 9 8 7 11 11 N 1.39877 * 120.09289 * 180.02562 * 10 9 8 12 12 C 1.34786 * 120.00064 * 326.51025 * 11 10 9 13 13 O 1.21389 * 119.99791 * 5.18466 * 12 11 10 14 14 C 1.49333 * 119.99944 * 185.18709 * 12 11 10 15 15 O 1.21360 * 120.00314 * 359.69545 * 14 12 11 16 16 N 1.34778 * 119.99701 * 179.70046 * 14 12 11 17 17 C 1.46504 * 120.00173 * 354.33829 * 16 14 12 18 18 C 1.46503 * 120.00001 * 174.33794 * 16 14 12 19 19 C 1.50704 * 109.46798 * 89.99751 * 18 16 14 20 20 H 1.07996 * 120.00300 * 0.02562 * 19 18 16 21 21 C 1.37875 * 119.99753 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00269 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47409 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46860 * 120.00669 * 23 21 19 26 26 H 1.48500 * 109.47688 * 240.00601 * 23 21 19 27 27 H 1.09004 * 109.46511 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47221 * 299.99479 * 1 2 3 29 29 H 1.08998 * 109.47234 * 60.00371 * 1 2 3 30 30 H 1.08999 * 109.47698 * 240.00102 * 2 1 3 31 31 H 1.08998 * 109.47234 * 119.99629 * 2 1 3 32 32 H 1.09007 * 109.46979 * 59.99909 * 3 2 1 33 33 H 1.09006 * 109.47179 * 299.99982 * 3 2 1 34 34 H 1.07998 * 119.99059 * 0.04666 * 6 5 4 35 35 H 1.08000 * 119.89548 * 180.27724 * 7 6 5 36 36 H 1.08000 * 119.91462 * 179.97438 * 8 7 6 37 37 H 1.07996 * 120.00755 * 180.02562 * 9 8 7 38 38 H 0.96999 * 120.00628 * 146.51715 * 11 10 9 39 39 H 1.08998 * 109.47195 * 84.06203 * 17 16 14 40 40 H 1.08995 * 109.47007 * 204.06787 * 17 16 14 41 41 H 1.09001 * 109.46865 * 324.06658 * 17 16 14 42 42 H 1.08994 * 109.46805 * 209.99773 * 18 16 14 43 43 H 1.09000 * 109.46716 * 330.00045 * 18 16 14 44 44 H 0.96996 * 120.00483 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4427 -0.0006 5 6 4.0861 2.6541 -0.0001 6 6 3.3332 3.8172 0.0003 7 6 3.9622 5.0482 0.0003 8 6 5.3431 5.1238 0.0003 9 6 6.1018 3.9690 -0.0002 10 6 5.4778 2.7293 -0.0001 11 7 6.2434 1.5587 -0.0001 12 6 7.4270 1.5275 -0.6442 13 8 7.8729 2.5399 -1.1439 14 6 8.1897 0.2474 -0.7430 15 8 7.7466 -0.7636 -0.2387 16 7 9.3704 0.2150 -1.3923 17 6 9.8465 1.4022 -2.1065 18 6 10.1776 -1.0075 -1.3839 19 6 9.7946 -1.8705 -2.5585 20 1 9.0270 -1.5411 -3.2430 21 6 10.4248 -3.0801 -2.7598 22 7 11.3600 -3.4811 -1.9265 23 14 9.9496 -4.1501 -4.2153 24 1 8.8794 -3.4781 -4.9952 25 1 11.1362 -4.3607 -5.0831 26 1 9.4558 -5.4620 -3.7251 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.2546 3.7621 0.0011 35 1 3.3734 5.9536 0.0052 36 1 5.8298 6.0879 -0.0002 37 1 7.1800 4.0311 0.0002 38 1 5.9226 0.7692 0.4634 39 1 10.3516 2.0686 -1.4074 40 1 10.5430 1.1006 -2.8888 41 1 8.9990 1.9207 -2.5548 42 1 11.2334 -0.7462 -1.4540 43 1 9.9993 -1.5542 -0.4579 44 1 11.8031 -4.3322 -2.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283383969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:15:13 Heat of formation + Delta-G solvation = -71.408941 kcal Electronic energy + Delta-G solvation = -26654.453538 eV Core-core repulsion = 22765.866810 eV Total energy + Delta-G solvation = -3888.586728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00423 -39.87073 -38.22565 -37.34926 -35.54703 -34.41768 -34.05182 -32.56138 -30.37385 -29.61647 -28.02566 -26.85038 -26.17377 -24.61833 -23.31565 -22.46546 -21.84516 -21.03819 -19.48106 -18.42273 -17.46686 -17.06074 -16.62865 -16.53965 -16.04017 -15.79198 -15.34612 -15.00175 -14.81915 -14.47132 -14.35451 -14.17295 -14.04361 -13.51336 -13.10336 -12.81752 -12.74822 -12.44836 -12.34536 -12.14058 -12.06551 -11.87103 -11.63462 -11.57917 -11.30429 -11.15201 -10.92749 -10.87789 -10.74703 -10.59277 -10.35189 -10.19204 -9.64947 -8.83764 -8.67687 -8.47525 -7.96589 -7.76054 -6.08432 -4.13359 1.05902 1.26919 1.97000 2.72032 2.93772 3.29303 3.36619 3.41780 3.58206 3.81624 4.06691 4.42706 4.49773 4.56262 4.71980 4.76531 4.80484 4.87208 4.99385 5.07349 5.15420 5.25767 5.26498 5.33026 5.42880 5.64158 5.67402 5.75011 5.88316 5.96197 6.00155 6.10093 6.14770 6.30078 6.39274 6.54330 6.69784 6.83129 7.18057 7.28714 7.29886 7.39552 7.85136 7.95568 8.14835 8.22917 8.65775 8.91850 9.51587 10.99879 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003300 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.478360 B = 8482.073182 C =10244.310768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.062 3.938 4 O -0.313 6.313 5 C 0.107 3.893 6 C -0.194 4.194 7 C -0.098 4.098 8 C -0.139 4.139 9 C -0.087 4.087 10 C 0.120 3.880 11 N -0.641 5.641 12 C 0.509 3.491 13 O -0.507 6.507 14 C 0.495 3.505 15 O -0.520 6.520 16 N -0.563 5.563 17 C 0.079 3.921 18 C 0.242 3.758 19 C -0.528 4.528 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.901 3.099 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.425 0.575 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.222 15.685 5.243 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.014 4.014 4 O -0.227 6.227 5 C 0.060 3.940 6 C -0.213 4.213 7 C -0.117 4.117 8 C -0.158 4.158 9 C -0.107 4.107 10 C 0.025 3.975 11 N -0.288 5.288 12 C 0.293 3.707 13 O -0.382 6.382 14 C 0.275 3.725 15 O -0.397 6.397 16 N -0.295 5.295 17 C -0.064 4.064 18 C 0.124 3.876 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.728 3.272 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.263 0.737 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.842 15.436 5.147 24.147 hybrid contribution -0.559 -0.831 -0.643 1.190 sum -18.401 14.605 4.505 23.921 Atomic orbital electron populations 1.21680 0.94275 1.02611 1.02010 1.21508 0.95932 0.94760 1.04223 1.22878 0.78211 0.99002 1.01268 1.86068 1.21472 1.26377 1.88775 1.18772 0.90370 0.85053 0.99799 1.21025 0.99761 0.91813 1.08722 1.20924 0.94711 0.96828 0.99224 1.20983 0.93599 0.98210 1.02968 1.21303 1.01765 0.89676 0.97958 1.17155 0.86778 0.87186 1.06375 1.43067 1.19470 1.14210 1.52055 1.20957 0.81477 0.90503 0.77811 1.90647 1.67320 1.35367 1.44843 1.19517 0.83126 0.87554 0.82326 1.90750 1.66952 1.34255 1.47777 1.48116 1.18408 1.15697 1.47264 1.22035 1.00988 0.86726 0.96640 1.19518 0.89623 0.79557 0.98909 1.21426 1.21196 1.03616 1.10392 0.92180 1.24930 0.94863 0.97421 0.96826 1.69935 1.24972 1.21710 1.36673 0.86399 0.78339 0.80322 0.82126 1.19741 1.20889 1.20804 0.91645 0.92468 0.92436 0.90523 0.90581 0.92055 0.92049 0.85255 0.85796 0.85485 0.83191 0.73683 0.93146 0.91127 0.90018 0.94109 0.93544 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -1.03 6.30 -26.73 -0.17 -1.20 16 3 C 0.06 0.54 4.74 37.16 0.18 0.72 16 4 O -0.31 -3.91 9.68 -19.61 -0.19 -4.10 16 5 C 0.11 1.37 6.70 -39.04 -0.26 1.11 16 6 C -0.19 -1.98 9.04 -39.46 -0.36 -2.34 16 7 C -0.10 -0.93 10.04 -39.56 -0.40 -1.33 16 8 C -0.14 -1.47 10.04 -39.58 -0.40 -1.87 16 9 C -0.09 -1.15 8.71 -39.40 -0.34 -1.49 16 10 C 0.12 1.72 6.34 -83.56 -0.53 1.19 16 11 N -0.64 -10.20 5.19 -10.19 -0.05 -10.26 16 12 C 0.51 9.23 7.62 -11.64 -0.09 9.14 16 13 O -0.51 -9.07 10.59 5.46 0.06 -9.02 16 14 C 0.49 10.74 7.72 -11.64 -0.09 10.65 16 15 O -0.52 -12.69 16.12 5.49 0.09 -12.60 16 16 N -0.56 -12.58 2.86 -183.51 -0.52 -13.11 16 17 C 0.08 1.46 9.27 59.85 0.55 2.01 16 18 C 0.24 6.36 5.09 -5.19 -0.03 6.33 16 19 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 20 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 23 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 33 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.15 2.10 6.08 -52.49 -0.32 1.79 16 38 H 0.42 6.59 8.01 -40.82 -0.33 6.26 16 39 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 40 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 41 H 0.08 1.46 5.85 -51.93 -0.30 1.16 16 42 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 43 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -32.49 371.19 -7.52 -40.01 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.23 Total: 3.51 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.98 Total: 8.72 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.16 Total: -48.98 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.04 Total: -25.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.49 -7.52 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283383969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.398 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds