Wall clock time and date at job start Sat Apr 11 2020 00:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 O 1.42896 * 109.47430 * 180.02562 * 3 2 1 5 5 C 1.35960 * 117.00334 * 180.02562 * 4 3 2 6 6 C 1.38554 * 120.08453 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.01619 * 180.02562 * 6 5 4 8 8 C 1.38300 * 120.19810 * 359.97438 * 7 6 5 9 9 C 1.38172 * 120.17325 * 0.02562 * 8 7 6 10 10 C 1.38794 * 119.97462 * 359.97438 * 9 8 7 11 11 N 1.39877 * 120.09289 * 180.02562 * 10 9 8 12 12 C 1.34786 * 120.00064 * 326.51025 * 11 10 9 13 13 O 1.21389 * 119.99791 * 5.18466 * 12 11 10 14 14 C 1.49333 * 119.99944 * 185.18709 * 12 11 10 15 15 O 1.21360 * 120.00314 * 359.69545 * 14 12 11 16 16 N 1.34778 * 119.99701 * 179.70046 * 14 12 11 17 17 C 1.46504 * 120.00173 * 354.33829 * 16 14 12 18 18 C 1.46503 * 120.00001 * 174.33794 * 16 14 12 19 19 C 1.50704 * 109.46798 * 89.99751 * 18 16 14 20 20 H 1.07996 * 120.00300 * 0.02562 * 19 18 16 21 21 C 1.37875 * 119.99753 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00269 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47409 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46860 * 120.00669 * 23 21 19 26 26 H 1.48500 * 109.47688 * 240.00601 * 23 21 19 27 27 H 1.09004 * 109.46511 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47221 * 299.99479 * 1 2 3 29 29 H 1.08998 * 109.47234 * 60.00371 * 1 2 3 30 30 H 1.08999 * 109.47698 * 240.00102 * 2 1 3 31 31 H 1.08998 * 109.47234 * 119.99629 * 2 1 3 32 32 H 1.09007 * 109.46979 * 59.99909 * 3 2 1 33 33 H 1.09006 * 109.47179 * 299.99982 * 3 2 1 34 34 H 1.07998 * 119.99059 * 0.04666 * 6 5 4 35 35 H 1.08000 * 119.89548 * 180.27724 * 7 6 5 36 36 H 1.08000 * 119.91462 * 179.97438 * 8 7 6 37 37 H 1.07996 * 120.00755 * 180.02562 * 9 8 7 38 38 H 0.96999 * 120.00628 * 146.51715 * 11 10 9 39 39 H 1.08998 * 109.47195 * 84.06203 * 17 16 14 40 40 H 1.08995 * 109.47007 * 204.06787 * 17 16 14 41 41 H 1.09001 * 109.46865 * 324.06658 * 17 16 14 42 42 H 1.08994 * 109.46805 * 209.99773 * 18 16 14 43 43 H 1.09000 * 109.46716 * 330.00045 * 18 16 14 44 44 H 0.96996 * 120.00483 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4427 -0.0006 5 6 4.0861 2.6541 -0.0001 6 6 3.3332 3.8172 0.0003 7 6 3.9622 5.0482 0.0003 8 6 5.3431 5.1238 0.0003 9 6 6.1018 3.9690 -0.0002 10 6 5.4778 2.7293 -0.0001 11 7 6.2434 1.5587 -0.0001 12 6 7.4270 1.5275 -0.6442 13 8 7.8729 2.5399 -1.1439 14 6 8.1897 0.2474 -0.7430 15 8 7.7466 -0.7636 -0.2387 16 7 9.3704 0.2150 -1.3923 17 6 9.8465 1.4022 -2.1065 18 6 10.1776 -1.0075 -1.3839 19 6 9.7946 -1.8705 -2.5585 20 1 9.0270 -1.5411 -3.2430 21 6 10.4248 -3.0801 -2.7598 22 7 11.3600 -3.4811 -1.9265 23 14 9.9496 -4.1501 -4.2153 24 1 8.8794 -3.4781 -4.9952 25 1 11.1362 -4.3607 -5.0831 26 1 9.4558 -5.4620 -3.7251 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.2546 3.7621 0.0011 35 1 3.3734 5.9536 0.0052 36 1 5.8298 6.0879 -0.0002 37 1 7.1800 4.0311 0.0002 38 1 5.9226 0.7692 0.4634 39 1 10.3516 2.0686 -1.4074 40 1 10.5430 1.1006 -2.8888 41 1 8.9990 1.9207 -2.5548 42 1 11.2334 -0.7462 -1.4540 43 1 9.9993 -1.5542 -0.4579 44 1 11.8031 -4.3322 -2.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283383969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:15:12 Heat of formation + Delta-G solvation = -92.066461 kcal Electronic energy + Delta-G solvation = -26655.349315 eV Core-core repulsion = 22765.866810 eV Total energy + Delta-G solvation = -3889.482505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.25176 -41.06010 -39.66409 -38.39194 -37.15770 -35.78305 -34.80343 -34.64270 -31.29100 -30.60626 -30.00864 -27.79324 -27.47310 -26.35246 -24.62500 -23.57378 -22.83049 -22.03685 -20.93000 -19.45701 -18.81356 -18.68800 -18.36466 -17.42294 -17.35117 -17.11398 -16.93706 -16.45357 -16.11405 -15.75154 -15.39437 -15.19240 -15.01701 -14.76543 -14.67999 -14.25004 -13.88851 -13.71369 -13.53204 -13.50016 -13.28473 -13.03507 -12.94478 -12.68279 -12.63466 -12.42522 -12.28418 -12.27149 -12.19577 -11.85122 -11.74369 -11.54642 -11.48269 -10.67257 -10.36267 -9.69780 -9.59937 -8.91629 -8.26408 -6.40952 -0.03426 0.39919 0.60367 1.29048 1.37186 1.39044 1.51735 2.09961 2.13113 2.36071 2.58272 2.78967 3.04068 3.26761 3.78318 3.93338 3.94209 4.07792 4.21795 4.27035 4.39604 4.43351 4.48366 4.50407 4.55214 4.67460 4.72187 4.81046 4.85292 4.98180 5.09520 5.11380 5.13485 5.16754 5.24488 5.33703 5.38738 5.43553 5.56015 5.67875 5.82619 5.92379 5.97516 6.32436 6.39678 6.63260 6.70162 6.96052 7.29406 8.81562 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003300 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.478360 B = 8482.073182 C =10244.310768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.337 6.337 5 C 0.099 3.901 6 C -0.191 4.191 7 C -0.084 4.084 8 C -0.140 4.140 9 C -0.100 4.100 10 C 0.081 3.919 11 N -0.631 5.631 12 C 0.518 3.482 13 O -0.506 6.506 14 C 0.488 3.512 15 O -0.557 6.557 16 N -0.572 5.572 17 C 0.082 3.918 18 C 0.256 3.744 19 C -0.547 4.547 20 H 0.051 0.949 21 C 0.012 3.988 22 N -0.924 5.924 23 Si 0.969 3.031 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.278 1.278 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.423 0.577 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.011 0.989 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.559 17.789 4.494 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.019 4.019 4 O -0.252 6.252 5 C 0.052 3.948 6 C -0.210 4.210 7 C -0.102 4.102 8 C -0.158 4.158 9 C -0.120 4.120 10 C -0.012 4.012 11 N -0.276 5.276 12 C 0.300 3.700 13 O -0.382 6.382 14 C 0.270 3.730 15 O -0.436 6.436 16 N -0.303 5.303 17 C -0.059 4.059 18 C 0.136 3.864 19 C -0.586 4.586 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.564 5.564 23 Si 0.793 3.207 24 H -0.195 1.195 25 H -0.193 1.193 26 H -0.204 1.204 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.261 0.739 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.029 0.971 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.202 17.594 4.400 27.148 hybrid contribution 0.071 -1.398 -0.337 1.440 sum -20.132 16.195 4.063 26.155 Atomic orbital electron populations 1.21655 0.92313 1.03089 1.02983 1.21535 0.97561 0.94465 1.02983 1.23137 0.76462 0.99528 1.02764 1.86050 1.23507 1.26824 1.88821 1.18946 0.89924 0.86068 0.99837 1.21413 1.01142 0.91076 1.07341 1.21399 0.94452 0.97955 0.96412 1.21305 0.94313 0.98199 1.02008 1.21319 1.01451 0.90373 0.98832 1.17449 0.87616 0.86615 1.09560 1.42908 1.18653 1.15067 1.51006 1.20061 0.82223 0.88819 0.78885 1.90638 1.67595 1.34537 1.45416 1.20182 0.82911 0.88710 0.81231 1.90712 1.67847 1.36039 1.49037 1.48115 1.18548 1.15672 1.47923 1.22178 1.01416 0.85448 0.96897 1.19063 0.89907 0.80794 0.96647 1.21642 1.21302 1.04653 1.10964 0.93026 1.25814 0.94628 0.98627 0.99663 1.70033 1.25706 1.22355 1.38258 0.85343 0.78467 0.78176 0.78671 1.19480 1.19258 1.20372 0.91487 0.91251 0.91644 0.92205 0.91473 0.90075 0.90770 0.82367 0.81990 0.83014 0.84645 0.73887 0.91088 0.90908 0.89271 0.94506 0.97060 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.13 -2.00 6.30 30.60 0.19 -1.81 16 3 C 0.06 0.88 4.74 71.98 0.34 1.22 16 4 O -0.34 -8.27 9.68 -93.09 -0.90 -9.17 16 5 C 0.10 2.41 6.70 22.62 0.15 2.56 16 6 C -0.19 -3.26 9.04 22.35 0.20 -3.06 16 7 C -0.08 -1.24 10.04 22.29 0.22 -1.02 16 8 C -0.14 -2.56 10.04 22.27 0.22 -2.34 16 9 C -0.10 -2.56 8.71 22.39 0.20 -2.36 16 10 C 0.08 2.31 6.34 38.26 0.24 2.56 16 11 N -0.63 -20.71 5.19 -304.48 -1.58 -22.29 16 12 C 0.52 19.31 7.62 87.23 0.66 19.98 16 13 O -0.51 -18.22 10.59 -3.37 -0.04 -18.26 16 14 C 0.49 22.11 7.72 87.23 0.67 22.78 16 15 O -0.56 -28.69 16.12 -3.28 -0.05 -28.75 16 16 N -0.57 -26.42 2.86 -852.86 -2.44 -28.85 16 17 C 0.08 3.03 9.27 127.77 1.18 4.22 16 18 C 0.26 14.03 5.09 85.63 0.44 14.46 16 19 C -0.55 -32.01 9.39 25.60 0.24 -31.77 16 20 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 21 C 0.01 0.71 5.46 84.65 0.46 1.17 16 22 N -0.92 -55.43 13.29 21.45 0.28 -55.14 16 23 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 0.95 7.66 -2.38 -0.02 0.94 16 33 H 0.07 0.98 7.66 -2.38 -0.02 0.96 16 34 H 0.16 1.74 6.30 -2.91 -0.02 1.72 16 35 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.14 3.80 6.08 -2.91 -0.02 3.78 16 38 H 0.42 13.87 8.01 -92.71 -0.74 13.13 16 39 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 40 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 41 H 0.09 3.17 5.85 -2.39 -0.01 3.16 16 42 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 43 H 0.01 0.69 7.51 -2.39 -0.02 0.67 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -72.28 371.19 3.73 -68.55 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.28 Total: 20.89 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.15 Total: 25.83 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -3.73 Total: -106.29 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.99 Total: -56.17 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.28 3.73 -68.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283383969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.514 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds