Wall clock time and date at job start Sat Apr 11 2020 00:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37097 * 119.99974 * 2 1 4 4 H 1.08003 * 119.99714 * 206.54646 * 3 2 1 5 5 C 1.38951 * 120.00351 * 26.54422 * 3 2 1 6 6 N 1.31417 * 119.99528 * 9.64488 * 5 3 2 7 7 Si 1.86793 * 120.00347 * 189.64141 * 5 3 2 8 8 H 1.48501 * 109.46905 * 94.98875 * 7 5 3 9 9 H 1.48499 * 109.47470 * 214.99343 * 7 5 3 10 10 H 1.48499 * 109.47260 * 334.99323 * 7 5 3 11 11 C 1.34776 * 119.99941 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99848 * 180.02562 * 11 2 1 13 13 C 1.50706 * 119.99945 * 359.97438 * 11 2 1 14 14 H 1.08999 * 109.45530 * 32.18371 * 13 11 2 15 15 C 1.53035 * 109.46451 * 272.21515 * 13 11 2 16 16 C 1.53112 * 109.27891 * 180.80724 * 15 13 11 17 17 C 1.53119 * 109.16272 * 57.65181 * 16 15 13 18 18 C 1.53044 * 109.27602 * 302.34708 * 17 16 15 19 19 N 1.46839 * 109.52465 * 59.18059 * 18 17 16 20 20 C 1.46896 * 111.00243 * 174.15715 * 19 18 17 21 21 C 1.50699 * 109.47370 * 288.84177 * 20 19 18 22 22 C 1.38269 * 119.98617 * 89.99569 * 21 20 19 23 23 C 1.38220 * 120.04689 * 180.02562 * 22 21 20 24 24 C 1.38215 * 120.03025 * 0.02562 * 23 22 21 25 25 C 1.38435 * 119.97174 * 359.97438 * 24 23 22 26 26 F 1.35106 * 120.02492 * 180.02562 * 25 24 23 27 27 C 1.38177 * 119.98444 * 269.72635 * 21 20 19 28 28 H 1.09004 * 109.46738 * 265.01204 * 1 2 3 29 29 H 1.09002 * 109.46954 * 25.00785 * 1 2 3 30 30 H 1.08994 * 109.47362 * 145.01079 * 1 2 3 31 31 H 0.97005 * 119.99613 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.49859 * 300.74493 * 15 13 11 33 33 H 1.08995 * 109.50505 * 60.85873 * 15 13 11 34 34 H 1.09001 * 109.52423 * 297.74460 * 16 15 13 35 35 H 1.08997 * 109.52595 * 177.55641 * 16 15 13 36 36 H 1.08998 * 109.50263 * 182.40608 * 17 16 15 37 37 H 1.08999 * 109.53550 * 62.30747 * 17 16 15 38 38 H 1.09002 * 109.46183 * 299.15838 * 18 17 16 39 39 H 1.09003 * 109.45910 * 179.19683 * 18 17 16 40 40 H 1.09000 * 109.46862 * 48.83848 * 20 19 18 41 41 H 1.09000 * 109.47197 * 168.83739 * 20 19 18 42 42 H 1.08000 * 119.97500 * 0.02562 * 22 21 20 43 43 H 1.08001 * 119.98308 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.01439 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.01311 * 359.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1451 1.2366 -0.4180 5 6 1.5657 2.3273 0.5377 6 7 0.4424 2.2331 1.2133 7 14 2.3760 3.9935 0.3005 8 1 1.7773 4.6719 -0.8770 9 1 2.1627 4.8248 1.5123 10 1 3.8325 3.8083 0.0774 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 1 0.4503 -2.3517 -0.5476 15 6 1.0826 -2.8864 1.4413 16 6 0.3349 -4.2225 1.4372 17 6 1.1847 -5.2718 0.7151 18 6 1.4844 -4.7885 -0.7058 19 7 2.2008 -3.5080 -0.6477 20 6 2.6268 -3.0819 -1.9874 21 6 3.7459 -3.9711 -2.4652 22 6 3.4587 -5.1222 -3.1752 23 6 4.4840 -5.9389 -3.6136 24 6 5.7977 -5.6060 -3.3421 25 6 6.0864 -4.4536 -2.6314 26 9 7.3702 -4.1269 -2.3659 27 6 5.0587 -3.6326 -2.1983 28 1 -0.3633 -0.0894 1.0238 29 1 -0.3633 0.9313 -0.4344 30 1 -0.3634 -0.8419 -0.5892 31 1 0.0343 3.0289 1.5891 32 1 2.0168 -2.9938 1.9928 33 1 0.4644 -2.1248 1.9165 34 1 -0.6171 -4.1056 0.9194 35 1 0.1554 -4.5427 2.4635 36 1 0.6392 -6.2145 0.6714 37 1 2.1203 -5.4175 1.2549 38 1 0.5489 -4.6571 -1.2496 39 1 2.1013 -5.5269 -1.2180 40 1 1.7855 -3.1548 -2.6765 41 1 2.9749 -2.0498 -1.9468 42 1 2.4324 -5.3834 -3.3874 43 1 4.2585 -6.8381 -4.1677 44 1 6.5986 -6.2445 -3.6844 45 1 5.2829 -2.7309 -1.6478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519273422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:18:14 Heat of formation + Delta-G solvation = -41.394995 kcal Electronic energy + Delta-G solvation = -27884.091079 eV Core-core repulsion = 24009.178643 eV Total energy + Delta-G solvation = -3874.912436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.73336 -39.94257 -38.73496 -37.21332 -34.68578 -33.79999 -31.78227 -30.98003 -30.65031 -30.14300 -26.58404 -26.14152 -24.77670 -23.27409 -22.99132 -22.39882 -21.05112 -19.86986 -18.62549 -17.16067 -16.87966 -16.34393 -16.18770 -16.02372 -15.63028 -15.34510 -14.83642 -14.56925 -14.31942 -14.02562 -13.87512 -13.69485 -13.29564 -13.17073 -13.10053 -12.91355 -12.42981 -12.30578 -11.96652 -11.73428 -11.58048 -11.55354 -11.31715 -11.21806 -11.01409 -10.86143 -10.78341 -10.56370 -10.47715 -10.33930 -10.17243 -10.08150 -9.00484 -8.86367 -8.61703 -8.27971 -7.88031 -7.62750 -6.31679 -3.90810 1.21557 1.32668 3.15760 3.25329 3.31157 3.57750 3.86948 4.06146 4.28672 4.35846 4.75191 4.85212 4.87659 5.01580 5.09136 5.10210 5.17779 5.21628 5.30250 5.43327 5.48811 5.56564 5.60770 5.70172 5.78613 5.87814 5.91269 5.96524 6.04171 6.08190 6.17352 6.23396 6.29337 6.29917 6.35514 6.36771 6.43102 6.65886 6.69994 6.83348 7.00612 7.18245 7.30314 7.41119 7.56049 8.17028 8.50431 9.20079 9.41718 10.00293 10.72994 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.004255 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.755954 B = 6579.128694 C = 8205.356548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.304 4.304 4 H 0.096 0.904 5 C 0.032 3.968 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.279 1.279 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.453 3.547 12 O -0.569 6.569 13 C 0.077 3.923 14 H 0.051 0.949 15 C -0.102 4.102 16 C -0.118 4.118 17 C -0.115 4.115 18 C 0.052 3.948 19 N -0.508 5.508 20 C 0.086 3.914 21 C -0.032 4.032 22 C -0.130 4.130 23 C -0.098 4.098 24 C -0.162 4.162 25 C 0.094 3.906 26 F -0.143 7.143 27 C -0.122 4.122 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.267 0.733 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.104 0.896 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -15.333 -6.454 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.167 5.167 3 C -0.432 4.432 4 H 0.114 0.886 5 C -0.171 4.171 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.240 3.760 12 O -0.452 6.452 13 C -0.034 4.034 14 H 0.068 0.932 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.153 4.153 18 C -0.076 4.076 19 N -0.233 5.233 20 C -0.041 4.041 21 C -0.033 4.033 22 C -0.149 4.149 23 C -0.116 4.116 24 C -0.181 4.181 25 C 0.075 3.925 26 F -0.121 7.121 27 C -0.141 4.141 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.122 0.878 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.064 -15.207 -6.050 16.367 hybrid contribution -0.386 1.075 -0.389 1.207 sum -0.449 -14.132 -6.439 15.536 Atomic orbital electron populations 1.21518 0.81561 0.99777 1.00372 1.43594 1.05301 1.04678 1.63121 1.19618 1.01730 0.84559 1.37302 0.88585 1.25353 0.96574 1.00126 0.95078 1.69972 1.18915 1.29840 1.33607 0.85926 0.79780 0.81456 0.77672 1.20496 1.20921 1.19307 1.19848 0.88159 0.84241 0.83715 1.90517 1.13577 1.86713 1.54361 1.21614 0.94295 0.91193 0.96289 0.93182 1.21443 1.01178 0.96598 0.94784 1.21586 0.98281 0.95371 1.00352 1.21575 1.00420 0.97605 0.95708 1.22203 0.96141 0.92030 0.97181 1.61530 1.40997 1.02204 1.18519 1.21173 0.94155 1.00011 0.88740 1.19628 0.93939 0.94707 0.95039 1.21124 0.99332 0.94850 0.99576 1.20869 0.91676 0.99516 0.99518 1.21055 0.98047 0.97064 1.01936 1.17759 0.78628 0.95872 1.00278 1.91489 1.35741 1.92595 1.92316 1.21257 0.91537 1.00977 1.00307 0.93029 0.90690 0.95915 0.92314 0.90709 0.90903 0.92366 0.91809 0.91952 0.91079 0.95350 0.90541 0.94381 0.87768 0.85871 0.85444 0.85282 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 8.44 59.85 0.51 2.94 16 2 N -0.45 -11.17 3.01 -122.19 -0.37 -11.53 16 3 C -0.30 -8.33 9.20 -14.93 -0.14 -8.47 16 4 H 0.10 2.76 7.48 -52.48 -0.39 2.37 16 5 C 0.03 0.83 5.10 -17.47 -0.09 0.74 16 6 N -0.88 -23.30 10.81 55.50 0.60 -22.70 16 7 Si 0.92 20.69 29.56 -169.99 -5.03 15.67 16 8 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.45 10.68 5.54 -10.98 -0.06 10.62 16 12 O -0.57 -15.21 15.02 5.55 0.08 -15.13 16 13 C 0.08 1.42 1.62 -68.87 -0.11 1.31 16 14 H 0.05 0.88 6.01 -51.93 -0.31 0.57 16 15 C -0.10 -1.71 5.36 -26.65 -0.14 -1.85 16 16 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 17 C -0.12 -1.40 6.09 -26.65 -0.16 -1.57 16 18 C 0.05 0.69 5.23 -3.83 -0.02 0.67 16 19 N -0.51 -8.52 4.20 -229.51 -0.96 -9.49 16 20 C 0.09 1.42 4.75 -4.98 -0.02 1.40 16 21 C -0.03 -0.48 5.03 -104.63 -0.53 -1.01 16 22 C -0.13 -1.55 8.07 -39.58 -0.32 -1.87 16 23 C -0.10 -1.04 10.04 -39.60 -0.40 -1.44 16 24 C -0.16 -1.92 10.03 -39.52 -0.40 -2.32 16 25 C 0.09 1.38 7.30 -39.42 -0.29 1.09 16 26 F -0.14 -2.21 17.27 2.25 0.04 -2.17 16 27 C -0.12 -1.96 9.68 -39.51 -0.38 -2.35 16 28 H 0.05 1.15 7.73 -51.93 -0.40 0.75 16 29 H 0.07 1.74 6.81 -51.93 -0.35 1.39 16 30 H 0.02 0.42 6.02 -51.93 -0.31 0.10 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.94 5.88 -51.93 -0.31 0.63 16 40 H 0.04 0.56 8.01 -51.93 -0.42 0.14 16 41 H 0.10 2.09 5.59 -51.93 -0.29 1.80 16 42 H 0.12 1.21 7.85 -52.49 -0.41 0.80 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.14 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -29.95 359.42 -9.48 -39.43 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.55 Total: 4.26 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.71 Total: -3.76 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.73 Total: -43.72 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.95 -9.48 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519273422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.963 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds