Wall clock time and date at job start Sat Apr 11 2020 00:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00306 * 2 1 4 4 C 1.53004 * 109.46712 * 89.99862 * 3 2 1 5 5 N 1.46506 * 109.46751 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99889 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00095 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99542 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00147 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47248 * 60.00255 * 10 8 6 12 12 H 1.48496 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47068 * 300.00552 * 10 8 6 14 14 C 1.34783 * 119.99937 * 180.02562 * 2 1 3 15 15 O 1.21280 * 120.00131 * 185.59417 * 14 2 1 16 16 C 1.50697 * 119.99643 * 5.59194 * 14 2 1 17 17 C 1.50694 * 112.85362 * 294.53412 * 16 14 2 18 18 C 1.38220 * 120.01149 * 124.01223 * 17 16 14 19 19 C 1.38228 * 120.02430 * 179.72813 * 18 17 16 20 20 C 1.38268 * 120.04810 * 0.54536 * 19 18 17 21 21 C 1.38178 * 120.02932 * 359.72926 * 20 19 18 22 22 C 1.38438 * 120.01406 * 304.28804 * 17 16 14 23 23 F 1.35102 * 120.02625 * 0.02562 * 22 17 16 24 24 C 1.53786 * 113.60897 * 163.22968 * 16 14 2 25 25 C 1.53784 * 87.08022 * 270.88208 * 24 16 14 26 26 C 1.53779 * 87.08394 * 334.56880 * 25 24 16 27 27 H 1.09002 * 109.46930 * 264.90775 * 1 2 3 28 28 H 1.08999 * 109.46999 * 24.90837 * 1 2 3 29 29 H 1.09007 * 109.47128 * 144.90524 * 1 2 3 30 30 H 1.09001 * 109.47536 * 210.00217 * 3 2 1 31 31 H 1.09000 * 109.47269 * 330.00410 * 3 2 1 32 32 H 1.08994 * 109.47849 * 299.99938 * 4 3 2 33 33 H 1.08999 * 109.47130 * 60.00973 * 4 3 2 34 34 H 0.96995 * 119.99886 * 0.02562 * 5 4 3 35 35 H 0.97005 * 119.99506 * 179.97438 * 9 8 6 36 36 H 1.07998 * 119.99046 * 359.97438 * 18 17 16 37 37 H 1.07992 * 119.97551 * 180.27514 * 19 18 17 38 38 H 1.08002 * 119.98803 * 179.75035 * 20 19 18 39 39 H 1.07998 * 120.01132 * 180.02562 * 21 20 19 40 40 H 1.08997 * 113.61967 * 25.43155 * 24 16 14 41 41 H 1.09006 * 113.61354 * 156.33747 * 24 16 14 42 42 H 1.09001 * 113.61168 * 220.01537 * 25 24 16 43 43 H 1.08995 * 113.61115 * 89.12047 * 25 24 16 44 44 H 1.08997 * 113.61100 * 270.88318 * 26 25 24 45 45 H 1.08997 * 113.61682 * 139.97641 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1846 2.9793 1.4426 6 6 3.5273 3.5720 2.6285 7 1 3.2582 3.1038 3.5638 8 6 4.2213 4.7742 2.6286 9 7 4.5496 5.3445 1.4887 10 14 4.6882 5.5831 4.2463 11 1 5.5589 4.6661 5.0251 12 1 5.4177 6.8477 3.9750 13 1 3.4587 5.8785 5.0249 14 6 2.1389 -1.1673 -0.0005 15 8 3.3474 -1.1699 0.1019 16 6 1.3907 -2.4691 -0.1283 17 6 0.4954 -2.7478 1.0514 18 6 -0.8534 -2.9784 0.8563 19 6 -1.6739 -3.2396 1.9377 20 6 -1.1486 -3.2594 3.2165 21 6 0.1984 -3.0235 3.4145 22 6 1.0224 -2.7673 2.3314 23 9 2.3394 -2.5359 2.5238 24 6 2.2848 -3.6575 -0.5197 25 6 1.9994 -3.2883 -1.9850 26 6 0.6930 -2.6479 -1.4871 27 1 -0.3633 -0.0912 1.0236 28 1 -0.3633 0.9321 -0.4328 29 1 -0.3634 -0.8409 -0.5909 30 1 3.1500 1.1384 -0.5139 31 1 1.6085 2.0284 -0.5138 32 1 1.5002 1.8407 1.9564 33 1 3.0416 0.9506 1.9563 34 1 3.4265 3.3996 0.6026 35 1 5.0343 6.1848 1.4887 36 1 -1.2657 -2.9585 -0.1417 37 1 -2.7268 -3.4241 1.7839 38 1 -1.7913 -3.4596 4.0611 39 1 0.6085 -3.0394 4.4135 40 1 3.3289 -3.5315 -0.2331 41 1 1.8781 -4.6253 -0.2261 42 1 1.8437 -4.1526 -2.6307 43 1 2.7069 -2.5706 -2.4002 44 1 -0.1489 -3.3396 -1.4579 45 1 0.4520 -1.7067 -1.9812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753251412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:19:29 Heat of formation + Delta-G solvation = -7.248811 kcal Electronic energy + Delta-G solvation = -27949.958194 eV Core-core repulsion = 24076.526448 eV Total energy + Delta-G solvation = -3873.431747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.84702 -41.24221 -38.89099 -37.52909 -35.78981 -34.27876 -31.76868 -31.21922 -30.75703 -28.40841 -26.98081 -26.02669 -25.78323 -23.71858 -22.86835 -22.20121 -21.63426 -20.52361 -18.50829 -17.95465 -17.14487 -16.88144 -16.50106 -16.08075 -15.84486 -15.59543 -15.19114 -14.93722 -14.53292 -14.32594 -14.28278 -13.51400 -13.38479 -13.32798 -13.11941 -12.87225 -12.83163 -12.69604 -12.50439 -12.28234 -12.17856 -12.00247 -11.54233 -11.21219 -11.08777 -10.93028 -10.84353 -10.71051 -10.61025 -10.49399 -10.09727 -9.77826 -9.64832 -9.13866 -8.81234 -8.77570 -8.44061 -6.87214 -5.70690 -2.99443 0.89374 0.95768 2.70781 3.07796 3.31612 3.48879 3.52537 3.54426 4.03439 4.23325 4.27506 4.36567 4.42626 4.58379 4.64334 4.67004 4.73099 4.99587 5.03005 5.12732 5.19331 5.38219 5.40503 5.45168 5.55245 5.57824 5.64628 5.68410 5.72780 5.81058 5.82263 5.88105 5.92052 5.98627 6.03005 6.09712 6.12177 6.15995 6.17797 6.63829 6.64925 6.81521 7.00097 7.54603 7.75527 8.33985 8.48168 9.58771 10.15208 10.50876 11.52349 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.003600 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.016876 B = 7775.952031 C = 8568.722037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.109 3.891 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.236 4.236 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.538 3.462 15 O -0.517 6.517 16 C -0.065 4.065 17 C -0.100 4.100 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.092 4.092 21 C -0.153 4.153 22 C 0.112 3.888 23 F -0.125 7.125 24 C -0.113 4.113 25 C -0.139 4.139 26 C -0.128 4.128 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.016 0.984 33 H 0.024 0.976 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.602 -22.324 -5.501 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C -0.013 4.013 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.324 3.676 15 O -0.391 6.391 16 C -0.069 4.069 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.149 4.149 20 C -0.110 4.110 21 C -0.172 4.172 22 C 0.093 3.907 23 F -0.103 7.103 24 C -0.150 4.150 25 C -0.176 4.176 26 C -0.165 4.165 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.862 -22.253 -5.271 27.831 hybrid contribution 0.445 0.798 0.911 1.291 sum -15.417 -21.455 -4.360 26.777 Atomic orbital electron populations 1.22000 0.79871 1.03056 1.01964 1.47673 1.06820 1.06053 1.73363 1.21745 0.97287 0.83015 0.99237 1.20897 0.95044 0.89354 0.93215 1.42201 1.67154 1.21586 1.06536 1.19170 1.29341 1.02286 0.85969 0.91328 1.24730 1.01290 0.98047 0.96901 1.69656 1.45151 1.19586 1.23964 0.86243 0.78130 0.78638 0.83054 1.21234 1.21630 1.21293 1.19609 0.87398 0.84024 0.76555 1.90732 1.13840 1.86520 1.48014 1.20852 0.96945 0.95429 0.93633 1.19476 0.94769 1.03712 0.92193 1.20975 0.91483 0.98458 0.99810 1.21160 1.00141 1.01235 0.92373 1.21032 0.94131 0.98203 0.97631 1.21218 0.94326 1.03060 0.98567 1.17669 0.78839 1.00652 0.93589 1.91610 1.31457 1.91451 1.95800 1.22866 1.00972 0.95608 0.95598 1.22825 0.97120 1.01085 0.96588 1.23167 0.98030 1.01975 0.93364 0.92765 0.90737 0.90965 0.89863 0.90445 0.96598 0.95812 0.78310 0.93486 0.84653 0.85241 0.85071 0.84638 0.89356 0.89413 0.90722 0.89678 0.88532 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.96 59.85 0.54 1.37 16 2 N -0.61 -9.32 2.87 -181.57 -0.52 -9.84 16 3 C 0.11 2.01 5.52 -4.04 -0.02 1.99 16 4 C 0.14 3.27 6.58 -4.04 -0.03 3.24 16 5 N -0.73 -19.94 5.60 -59.90 -0.34 -20.28 16 6 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 7 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.25 13.06 55.49 0.72 -28.53 16 10 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.54 8.74 5.30 -10.98 -0.06 8.68 16 15 O -0.52 -10.65 15.52 5.56 0.09 -10.57 16 16 C -0.07 -0.77 0.28 -156.00 -0.04 -0.82 16 17 C -0.10 -1.11 3.67 -104.56 -0.38 -1.49 16 18 C -0.09 -0.71 8.04 -39.59 -0.32 -1.03 16 19 C -0.13 -0.93 10.05 -39.57 -0.40 -1.32 16 20 C -0.09 -0.73 10.04 -39.59 -0.40 -1.13 16 21 C -0.15 -1.62 10.03 -39.51 -0.40 -2.01 16 22 C 0.11 1.47 7.07 -39.42 -0.28 1.19 16 23 F -0.12 -2.10 15.97 2.25 0.04 -2.06 16 24 C -0.11 -1.27 7.09 -25.91 -0.18 -1.45 16 25 C -0.14 -1.30 7.80 -25.92 -0.20 -1.50 16 26 C -0.13 -1.08 5.29 -25.92 -0.14 -1.21 16 27 H 0.05 0.63 8.01 -51.93 -0.42 0.22 16 28 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 29 H 0.07 0.62 3.85 -51.93 -0.20 0.42 16 30 H 0.08 1.67 7.51 -51.93 -0.39 1.28 16 31 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.14 0.73 5.91 -52.49 -0.31 0.42 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.09 1.22 7.34 -51.93 -0.38 0.84 16 41 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.57 6.26 -51.93 -0.33 0.24 16 45 H 0.08 0.66 6.82 -51.93 -0.35 0.30 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -36.01 365.16 -8.52 -44.53 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.43 Total: 6.17 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.56 Total: -3.22 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.13 Total: -58.64 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.01 -8.52 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753251412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.279 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds