Wall clock time and date at job start Sat Apr 11 2020 00:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00306 * 2 1 4 4 C 1.53004 * 109.46712 * 89.99862 * 3 2 1 5 5 N 1.46506 * 109.46751 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99889 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.38813 * 120.00095 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99542 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 120.00147 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47248 * 60.00255 * 10 8 6 12 12 H 1.48496 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47068 * 300.00552 * 10 8 6 14 14 C 1.34783 * 119.99937 * 180.02562 * 2 1 3 15 15 O 1.21280 * 120.00131 * 185.59417 * 14 2 1 16 16 C 1.50697 * 119.99643 * 5.59194 * 14 2 1 17 17 C 1.50694 * 112.85362 * 294.53412 * 16 14 2 18 18 C 1.38220 * 120.01149 * 124.01223 * 17 16 14 19 19 C 1.38228 * 120.02430 * 179.72813 * 18 17 16 20 20 C 1.38268 * 120.04810 * 0.54536 * 19 18 17 21 21 C 1.38178 * 120.02932 * 359.72926 * 20 19 18 22 22 C 1.38438 * 120.01406 * 304.28804 * 17 16 14 23 23 F 1.35102 * 120.02625 * 0.02562 * 22 17 16 24 24 C 1.53786 * 113.60897 * 163.22968 * 16 14 2 25 25 C 1.53784 * 87.08022 * 270.88208 * 24 16 14 26 26 C 1.53779 * 87.08394 * 334.56880 * 25 24 16 27 27 H 1.09002 * 109.46930 * 264.90775 * 1 2 3 28 28 H 1.08999 * 109.46999 * 24.90837 * 1 2 3 29 29 H 1.09007 * 109.47128 * 144.90524 * 1 2 3 30 30 H 1.09001 * 109.47536 * 210.00217 * 3 2 1 31 31 H 1.09000 * 109.47269 * 330.00410 * 3 2 1 32 32 H 1.08994 * 109.47849 * 299.99938 * 4 3 2 33 33 H 1.08999 * 109.47130 * 60.00973 * 4 3 2 34 34 H 0.96995 * 119.99886 * 0.02562 * 5 4 3 35 35 H 0.97005 * 119.99506 * 179.97438 * 9 8 6 36 36 H 1.07998 * 119.99046 * 359.97438 * 18 17 16 37 37 H 1.07992 * 119.97551 * 180.27514 * 19 18 17 38 38 H 1.08002 * 119.98803 * 179.75035 * 20 19 18 39 39 H 1.07998 * 120.01132 * 180.02562 * 21 20 19 40 40 H 1.08997 * 113.61967 * 25.43155 * 24 16 14 41 41 H 1.09006 * 113.61354 * 156.33747 * 24 16 14 42 42 H 1.09001 * 113.61168 * 220.01537 * 25 24 16 43 43 H 1.08995 * 113.61115 * 89.12047 * 25 24 16 44 44 H 1.08997 * 113.61100 * 270.88318 * 26 25 24 45 45 H 1.08997 * 113.61682 * 139.97641 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1846 2.9793 1.4426 6 6 3.5273 3.5720 2.6285 7 1 3.2582 3.1038 3.5638 8 6 4.2213 4.7742 2.6286 9 7 4.5496 5.3445 1.4887 10 14 4.6882 5.5831 4.2463 11 1 5.5589 4.6661 5.0251 12 1 5.4177 6.8477 3.9750 13 1 3.4587 5.8785 5.0249 14 6 2.1389 -1.1673 -0.0005 15 8 3.3474 -1.1699 0.1019 16 6 1.3907 -2.4691 -0.1283 17 6 0.4954 -2.7478 1.0514 18 6 -0.8534 -2.9784 0.8563 19 6 -1.6739 -3.2396 1.9377 20 6 -1.1486 -3.2594 3.2165 21 6 0.1984 -3.0235 3.4145 22 6 1.0224 -2.7673 2.3314 23 9 2.3394 -2.5359 2.5238 24 6 2.2848 -3.6575 -0.5197 25 6 1.9994 -3.2883 -1.9850 26 6 0.6930 -2.6479 -1.4871 27 1 -0.3633 -0.0912 1.0236 28 1 -0.3633 0.9321 -0.4328 29 1 -0.3634 -0.8409 -0.5909 30 1 3.1500 1.1384 -0.5139 31 1 1.6085 2.0284 -0.5138 32 1 1.5002 1.8407 1.9564 33 1 3.0416 0.9506 1.9563 34 1 3.4265 3.3996 0.6026 35 1 5.0343 6.1848 1.4887 36 1 -1.2657 -2.9585 -0.1417 37 1 -2.7268 -3.4241 1.7839 38 1 -1.7913 -3.4596 4.0611 39 1 0.6085 -3.0394 4.4135 40 1 3.3289 -3.5315 -0.2331 41 1 1.8781 -4.6253 -0.2261 42 1 1.8437 -4.1526 -2.6307 43 1 2.7069 -2.5706 -2.4002 44 1 -0.1489 -3.3396 -1.4579 45 1 0.4520 -1.7067 -1.9812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753251412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:19:28 Heat of formation + Delta-G solvation = -30.785410 kcal Electronic energy + Delta-G solvation = -27950.978818 eV Core-core repulsion = 24076.526448 eV Total energy + Delta-G solvation = -3874.452370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.91334 -42.22664 -39.81719 -38.49998 -37.32437 -36.14672 -33.48235 -32.34634 -31.46023 -30.11624 -27.95932 -27.05414 -26.81250 -25.51479 -23.70796 -23.49046 -22.82337 -21.69005 -19.66863 -19.21935 -18.78475 -17.88507 -17.49223 -17.26527 -16.86583 -16.72992 -16.55653 -16.22640 -15.87299 -15.49136 -15.23781 -15.11832 -14.99134 -14.82442 -14.26941 -14.20247 -13.94824 -13.62057 -13.30690 -13.18308 -13.12942 -13.02275 -12.86736 -12.78031 -12.70644 -12.36763 -12.21779 -12.20796 -11.93850 -11.90723 -11.48430 -11.30838 -11.03570 -10.89777 -9.86903 -9.77720 -9.57930 -9.13473 -8.02635 -5.34336 0.16867 0.26068 1.41575 1.46513 1.50018 1.53009 1.88198 2.51481 2.62613 3.26492 3.29727 3.39971 3.43205 3.50312 3.60350 3.81429 3.92647 3.99027 4.04791 4.17211 4.17597 4.30232 4.32100 4.41947 4.46114 4.48785 4.60312 4.69555 4.75259 4.85919 4.92057 4.94560 4.97857 4.99185 5.03644 5.07887 5.13200 5.26766 5.35711 5.35928 5.41260 5.48779 5.49823 5.96855 6.18448 6.33717 7.10418 7.24590 7.94003 8.22143 9.20421 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.003600 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.016876 B = 7775.952031 C = 8568.722037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.123 3.877 4 C 0.153 3.847 5 N -0.740 5.740 6 C -0.258 4.258 7 H 0.067 0.933 8 C -0.068 4.068 9 N -0.966 5.966 10 Si 0.979 3.021 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.530 3.470 15 O -0.578 6.578 16 C -0.069 4.069 17 C -0.108 4.108 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.088 4.088 21 C -0.168 4.168 22 C 0.061 3.939 23 F -0.164 7.164 24 C -0.120 4.120 25 C -0.136 4.136 26 C -0.109 4.109 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.024 0.976 33 H -0.012 1.012 34 H 0.377 0.623 35 H 0.255 0.745 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.131 0.869 40 H 0.045 0.955 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.139 0.861 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 -23.496 -6.123 32.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.337 5.337 3 C -0.001 4.001 4 C 0.025 3.975 5 N -0.384 5.384 6 C -0.390 4.390 7 H 0.085 0.915 8 C -0.261 4.261 9 N -0.615 5.615 10 Si 0.806 3.194 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.198 1.198 14 C 0.319 3.681 15 O -0.457 6.457 16 C -0.072 4.072 17 C -0.109 4.109 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.187 4.187 22 C 0.042 3.958 23 F -0.143 7.143 24 C -0.157 4.157 25 C -0.173 4.173 26 C -0.146 4.146 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.006 0.994 34 H 0.209 0.791 35 H 0.064 0.936 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.177 0.823 39 H 0.149 0.851 40 H 0.064 0.936 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.157 0.843 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.408 -23.453 -5.891 31.642 hybrid contribution 1.800 1.091 1.165 2.405 sum -18.608 -22.362 -4.726 29.473 Atomic orbital electron populations 1.22320 0.76772 1.05576 1.02684 1.47782 1.08642 1.04624 1.72692 1.21400 0.97402 0.85315 0.95942 1.20873 0.93839 0.86666 0.96090 1.42350 1.67647 1.22747 1.05668 1.19519 1.29810 1.02863 0.86769 0.91464 1.25626 1.01211 0.98573 1.00687 1.69810 1.45697 1.19867 1.26147 0.85149 0.78128 0.77376 0.78710 1.20848 1.21216 1.19767 1.20550 0.87048 0.85683 0.74863 1.90694 1.16815 1.87544 1.50612 1.20807 0.97514 0.92532 0.96321 1.19532 0.96059 1.04709 0.90620 1.21390 0.89625 0.96735 1.02006 1.21670 1.01883 0.98446 0.91270 1.21435 0.92884 0.96744 0.99556 1.21388 0.95643 1.03780 0.97881 1.18282 0.77786 1.03955 0.95780 1.91510 1.34314 1.92300 1.96126 1.22937 0.98738 0.96662 0.97405 1.22782 0.97314 1.01669 0.95521 1.23265 0.98328 1.03169 0.89805 0.93052 0.88963 0.87561 0.92382 0.87880 0.95806 0.99436 0.79078 0.93584 0.80925 0.81143 0.82285 0.85103 0.93614 0.87231 0.87743 0.92342 0.84298 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 8.96 127.77 1.14 2.49 16 2 N -0.61 -18.80 2.87 -846.74 -2.43 -21.24 16 3 C 0.12 4.70 5.52 86.38 0.48 5.18 16 4 C 0.15 7.34 6.58 86.38 0.57 7.91 16 5 N -0.74 -42.06 5.60 -343.44 -1.92 -43.99 16 6 C -0.26 -15.81 9.99 84.03 0.84 -14.97 16 7 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 9 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 10 Si 0.98 48.40 29.55 68.60 2.03 50.43 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.53 18.07 5.30 87.66 0.46 18.54 16 15 O -0.58 -26.32 15.52 -3.03 -0.05 -26.37 16 16 C -0.07 -1.58 0.28 -53.15 -0.02 -1.60 16 17 C -0.11 -2.23 3.67 -19.82 -0.07 -2.30 16 18 C -0.08 -0.88 8.04 22.26 0.18 -0.70 16 19 C -0.12 -1.01 10.05 22.27 0.22 -0.79 16 20 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 21 C -0.17 -3.54 10.03 22.31 0.22 -3.32 16 22 C 0.06 1.66 7.07 22.38 0.16 1.82 16 23 F -0.16 -6.17 15.97 44.97 0.72 -5.45 16 24 C -0.12 -2.75 7.09 31.12 0.22 -2.53 16 25 C -0.14 -2.36 7.80 31.12 0.24 -2.12 16 26 C -0.11 -1.43 5.29 31.12 0.16 -1.26 16 27 H 0.05 1.07 8.01 -2.39 -0.02 1.06 16 28 H 0.09 1.53 7.84 -2.39 -0.02 1.51 16 29 H 0.11 1.35 3.85 -2.38 -0.01 1.34 16 30 H 0.06 2.50 7.51 -2.39 -0.02 2.49 16 31 H 0.10 3.38 7.86 -2.39 -0.02 3.37 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.38 22.03 7.67 -92.71 -0.71 21.32 16 35 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.17 0.57 5.91 -2.91 -0.02 0.56 16 37 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 38 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.04 1.43 7.34 -2.39 -0.02 1.41 16 41 H 0.11 1.97 8.10 -2.38 -0.02 1.95 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.14 0.70 6.26 -2.39 -0.01 0.68 16 45 H 0.09 1.07 6.82 -2.39 -0.02 1.05 16 Total: -1.00 -86.36 365.16 4.43 -81.93 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.30 Total: 24.10 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.51 Total: 1.76 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -4.07 Total: -126.39 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.72 Total: -5.45 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -86.36 4.43 -81.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753251412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -86.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds