Wall clock time and date at job start Sat Apr 11 2020 00:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46903 * 2 1 4 4 C 1.34230 * 117.00076 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99981 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.53009 * 109.46938 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.46918 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47036 * 179.97438 * 8 7 6 10 10 N 1.46893 * 109.47471 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00186 * 66.04501 * 10 9 8 12 12 C 1.50693 * 109.47511 * 193.95938 * 11 10 9 13 13 H 1.08004 * 119.99737 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00289 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99874 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00381 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46839 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47096 * 119.99951 * 16 14 12 19 19 H 1.48490 * 109.47575 * 240.00042 * 16 14 12 20 20 C 1.46900 * 111.00186 * 190.00369 * 10 9 8 21 21 C 1.50703 * 109.47016 * 170.00348 * 20 10 9 22 22 C 1.38223 * 119.62264 * 95.01930 * 21 20 10 23 23 C 1.38628 * 119.16031 * 179.97438 * 22 21 20 24 24 C 1.38672 * 118.42475 * 359.97438 * 23 22 21 25 25 C 1.38186 * 119.15778 * 0.02562 * 24 23 22 26 26 N 1.31856 * 119.61279 * 274.99401 * 21 20 10 27 27 H 1.09007 * 109.47135 * 299.99825 * 1 2 3 28 28 H 1.08994 * 109.47591 * 59.99552 * 1 2 3 29 29 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46961 * 240.00795 * 2 1 3 31 31 H 1.08990 * 109.47142 * 120.00219 * 2 1 3 32 32 H 1.09002 * 109.47316 * 60.00212 * 6 4 3 33 33 H 1.09005 * 109.47355 * 299.99805 * 6 4 3 34 34 H 1.08996 * 109.46676 * 59.99999 * 7 6 4 35 35 H 1.08997 * 109.46820 * 300.00301 * 7 6 4 36 36 H 1.09002 * 109.47327 * 60.00050 * 8 7 6 37 37 H 1.09000 * 109.46909 * 299.99658 * 8 7 6 38 38 H 1.09002 * 109.46959 * 59.99901 * 9 8 7 39 39 H 1.09000 * 109.47285 * 300.00579 * 9 8 7 40 40 H 1.09001 * 109.46809 * 313.96000 * 11 10 9 41 41 H 1.09002 * 109.47034 * 73.95355 * 11 10 9 42 42 H 0.97002 * 119.99928 * 180.02562 * 15 14 12 43 43 H 1.08989 * 109.47527 * 49.99888 * 20 10 9 44 44 H 1.08996 * 109.46581 * 289.99458 * 20 10 9 45 45 H 1.07995 * 120.41821 * 359.95030 * 22 21 20 46 46 H 1.08006 * 120.78822 * 180.02562 * 23 22 21 47 47 H 1.07993 * 120.42192 * 179.97438 * 24 23 22 48 48 H 1.08001 * 119.60956 * 180.27218 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9375 0.0000 7 6 5.4486 2.8575 -0.0014 8 6 6.0333 4.2713 -0.0002 9 6 7.5612 4.1913 -0.0010 10 7 8.1227 5.5487 -0.0005 11 6 7.8100 6.2473 1.2534 12 6 8.0907 7.7190 1.0920 13 1 8.4645 8.0976 0.1521 14 6 7.8714 8.5822 2.1446 15 7 7.4167 8.1212 3.2893 16 14 8.2201 10.4065 1.9448 17 1 8.7200 10.6673 0.5710 18 1 6.9709 11.1769 2.1711 19 1 9.2460 10.8256 2.9332 20 6 9.5718 5.5191 -0.2394 21 6 10.0706 6.9214 -0.4761 22 6 10.5906 7.6486 0.5782 23 6 11.0472 8.9374 0.3496 24 6 10.9638 9.4488 -0.9367 25 6 10.4317 8.6624 -1.9407 26 7 10.0064 7.4402 -1.6866 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.5851 3.4691 0.8905 33 1 3.5842 3.4702 -0.8895 34 1 5.7837 2.3260 -0.8921 35 1 5.7853 2.3246 0.8878 36 1 5.6981 4.8024 0.8907 37 1 5.6966 4.8045 -0.8893 38 1 7.8967 3.6601 -0.8917 39 1 7.8976 3.6582 0.8882 40 1 6.7574 6.1028 1.4971 41 1 8.4274 5.8456 2.0569 42 1 7.2621 8.7285 4.0297 43 1 9.7833 4.9057 -1.1151 44 1 10.0748 5.0966 0.6304 45 1 10.6402 7.2183 1.5674 46 1 11.4589 9.5289 1.1540 47 1 11.3096 10.4492 -1.1510 48 1 10.3674 9.0518 -2.9460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266870553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:21:39 Heat of formation + Delta-G solvation = -71.255648 kcal Electronic energy + Delta-G solvation = -26673.676505 eV Core-core repulsion = 22920.929519 eV Total energy + Delta-G solvation = -3752.746986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52475 -41.10674 -38.64451 -37.80458 -35.71914 -34.59126 -33.15541 -32.82360 -32.38877 -30.34266 -29.32753 -26.88789 -25.26935 -24.26576 -24.11784 -23.37012 -22.20773 -21.47631 -21.35670 -18.69916 -18.63471 -17.84662 -17.55474 -17.20646 -17.10483 -16.61865 -16.33240 -16.20668 -16.11658 -15.39631 -14.95965 -14.81363 -14.45424 -14.30849 -14.03755 -13.96535 -13.76391 -13.71211 -13.45196 -13.33285 -12.99137 -12.88500 -12.64896 -12.58804 -12.49875 -12.42481 -12.25835 -12.17818 -11.94344 -11.67653 -11.52832 -11.48174 -11.30611 -11.22714 -10.58414 -10.42846 -10.11770 -9.38454 -8.97105 -8.14746 -6.11165 0.47385 0.65768 1.16583 1.34458 1.39899 1.50688 1.69688 2.41772 2.97277 3.21911 3.51818 3.63315 3.70816 3.93034 3.98845 4.03037 4.08147 4.09517 4.17676 4.32259 4.36305 4.39975 4.44882 4.49645 4.53311 4.62643 4.70950 4.79403 4.80642 4.86042 4.91749 4.92081 4.98051 5.05950 5.09671 5.15755 5.20964 5.33170 5.41304 5.44232 5.46533 5.51150 5.55507 5.76350 6.06027 6.15970 6.38661 6.68263 6.72285 6.96032 7.36817 7.49138 8.95950 Molecular weight = 320.19amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.002551 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.297602 B =10973.126461 C =11947.224879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.365 6.365 4 C 0.466 3.534 5 O -0.541 6.541 6 C -0.110 4.110 7 C -0.094 4.094 8 C -0.104 4.104 9 C 0.058 3.942 10 N -0.538 5.538 11 C 0.201 3.799 12 C -0.487 4.487 13 H 0.071 0.929 14 C 0.015 3.985 15 N -0.930 5.930 16 Si 0.925 3.075 17 H -0.252 1.252 18 H -0.293 1.293 19 H -0.276 1.276 20 C 0.116 3.884 21 C 0.144 3.856 22 C -0.103 4.103 23 C -0.113 4.113 24 C -0.174 4.174 25 C 0.065 3.935 26 N -0.494 5.494 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.020 0.980 40 H 0.018 0.982 41 H -0.036 1.036 42 H 0.259 0.741 43 H 0.090 0.910 44 H 0.037 0.963 45 H 0.111 0.889 46 H 0.133 0.867 47 H 0.153 0.847 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 -9.003 -7.734 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.311 3.689 5 O -0.432 6.432 6 C -0.147 4.147 7 C -0.132 4.132 8 C -0.142 4.142 9 C -0.069 4.069 10 N -0.263 5.263 11 C 0.075 3.925 12 C -0.526 4.526 13 H 0.089 0.911 14 C -0.183 4.183 15 N -0.571 5.571 16 Si 0.751 3.249 17 H -0.175 1.175 18 H -0.219 1.219 19 H -0.202 1.202 20 C -0.012 4.012 21 C 0.005 3.995 22 C -0.123 4.123 23 C -0.139 4.139 24 C -0.194 4.194 25 C -0.091 4.091 26 N -0.204 5.204 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.038 0.962 40 H 0.036 0.964 41 H -0.018 1.018 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.129 0.871 46 H 0.151 0.849 47 H 0.171 0.829 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.454 -9.508 -8.641 13.958 hybrid contribution 0.706 0.942 2.075 2.385 sum -4.748 -8.567 -6.566 11.792 Atomic orbital electron populations 1.21827 0.90460 1.04364 1.03701 1.23283 0.97112 0.79364 1.02480 1.86530 1.24270 1.33677 1.83686 1.24211 0.80475 0.93287 0.70967 1.90643 1.61074 1.44423 1.47015 1.21488 0.95957 0.89717 1.07568 1.21250 0.92431 0.96427 1.03064 1.21457 0.94253 0.96058 1.02450 1.22085 0.95584 0.89034 1.00239 1.62036 1.10739 1.16385 1.37121 1.19566 0.95052 0.93362 0.84537 1.21683 1.40415 0.92478 0.97994 0.91093 1.25501 0.95835 1.01817 0.95107 1.70071 1.47363 1.36062 1.03624 0.85973 0.77699 0.81878 0.79327 1.17537 1.21941 1.20215 1.20762 0.88526 0.91768 1.00138 1.20777 0.93325 0.96664 0.88707 1.21655 0.96165 0.95659 0.98871 1.21546 0.99381 0.95182 0.97807 1.22240 1.01728 1.01851 0.93571 1.22970 0.95820 0.89820 1.00500 1.67367 1.15703 1.14385 1.22975 0.91425 0.91193 0.88162 0.91245 0.91567 0.86587 0.85474 0.90807 0.92296 0.93128 0.90957 0.89810 0.96201 0.96450 1.01827 0.93185 0.89143 0.94455 0.87075 0.84948 0.82945 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.05 0.89 6.19 71.98 0.45 1.33 16 3 O -0.36 -8.08 10.22 -51.41 -0.53 -8.60 16 4 C 0.47 11.50 7.96 71.24 0.57 12.06 16 5 O -0.54 -16.40 15.73 21.98 0.35 -16.05 16 6 C -0.11 -2.37 5.81 29.85 0.17 -2.20 16 7 C -0.09 -2.38 4.51 30.60 0.14 -2.24 16 8 C -0.10 -3.22 5.17 30.59 0.16 -3.06 16 9 C 0.06 1.99 4.96 86.30 0.43 2.41 16 10 N -0.54 -22.46 4.56 -905.40 -4.13 -26.59 16 11 C 0.20 10.04 4.55 85.55 0.39 10.43 16 12 C -0.49 -25.67 5.77 25.60 0.15 -25.52 16 13 H 0.07 3.77 4.92 -2.91 -0.01 3.76 16 14 C 0.02 0.83 5.46 84.65 0.46 1.29 16 15 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 16 Si 0.92 42.74 28.15 68.60 1.93 44.67 16 17 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 C 0.12 4.48 5.28 85.56 0.45 4.93 16 21 C 0.14 5.86 4.01 42.55 0.17 6.03 16 22 C -0.10 -4.16 6.31 22.36 0.14 -4.02 16 23 C -0.11 -4.07 8.69 22.47 0.20 -3.87 16 24 C -0.17 -5.56 10.11 22.36 0.23 -5.34 16 25 C 0.06 2.16 11.18 84.67 0.95 3.10 16 26 N -0.49 -19.38 10.16 -183.88 -1.87 -21.25 16 27 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 31 H 0.07 1.17 8.13 -2.39 -0.02 1.16 16 32 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.05 1.80 6.31 -2.39 -0.02 1.78 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 2.49 7.93 -2.39 -0.02 2.47 16 39 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 40 H 0.02 0.94 5.98 -2.39 -0.01 0.92 16 41 H -0.04 -1.96 7.99 -2.39 -0.02 -1.98 16 42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.09 3.10 7.93 -2.39 -0.02 3.08 16 44 H 0.04 1.41 7.91 -2.39 -0.02 1.39 16 45 H 0.11 4.75 7.99 -2.91 -0.02 4.72 16 46 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 47 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 48 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -67.19 388.55 2.74 -64.45 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.92 Total: 22.33 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.78 Total: -5.55 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -5.71 Total: -101.25 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.18 Total: -24.66 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.93 Total: 44.67 kcal Total: -67.19 2.74 -64.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266870553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds