Wall clock time and date at job start Sat Apr 11 2020 00:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 N 1.46501 * 109.47385 * 179.97438 * 3 2 1 5 5 C 1.34261 * 125.75321 * 125.00095 * 4 3 2 6 6 C 1.38044 * 107.41666 * 180.02562 * 5 4 3 7 7 C 1.47432 * 126.41324 * 180.02562 * 6 5 4 8 8 O 1.21604 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99700 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99560 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.45973 * 34.97879 * 10 9 7 12 12 C 1.53044 * 109.46243 * 275.00370 * 10 9 7 13 13 C 1.53197 * 109.30836 * 178.61585 * 12 10 9 14 14 N 1.46922 * 108.77597 * 54.63980 * 13 12 10 15 15 C 1.36935 * 120.63167 * 126.41120 * 14 13 12 16 16 H 1.08001 * 119.99678 * 209.00971 * 15 14 13 17 17 C 1.38812 * 120.00435 * 29.01735 * 15 14 13 18 18 N 1.31621 * 119.99451 * 15.00287 * 17 15 14 19 19 Si 1.86792 * 120.00296 * 195.01214 * 17 15 14 20 20 H 1.48499 * 109.47302 * 89.99162 * 19 17 15 21 21 H 1.48500 * 109.47289 * 209.99574 * 19 17 15 22 22 H 1.48502 * 109.46976 * 329.99511 * 19 17 15 23 23 C 1.46930 * 118.73629 * 306.38348 * 14 13 12 24 24 H 1.09003 * 109.58494 * 293.82300 * 23 14 13 25 25 C 1.53001 * 109.58503 * 173.54257 * 23 14 13 26 26 C 1.53044 * 109.45608 * 154.93319 * 10 9 7 27 27 C 1.41282 * 107.17148 * 359.97438 * 6 5 4 28 28 N 1.30448 * 108.02308 * 359.72375 * 27 6 5 29 29 H 1.08997 * 109.47502 * 60.00109 * 1 2 3 30 30 H 1.09005 * 109.46798 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47339 * 299.99054 * 1 2 3 32 32 H 1.09000 * 109.47492 * 240.00438 * 2 1 3 33 33 H 1.08997 * 109.47728 * 120.00394 * 2 1 3 34 34 H 1.08997 * 109.47201 * 300.00717 * 3 2 1 35 35 H 1.09000 * 109.47027 * 60.00293 * 3 2 1 36 36 H 1.08002 * 126.28876 * 0.02562 * 5 4 3 37 37 H 0.96991 * 120.00428 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.49314 * 298.56300 * 12 10 9 39 39 H 1.08997 * 109.49899 * 58.66376 * 12 10 9 40 40 H 1.09005 * 109.58181 * 174.41901 * 13 12 10 41 41 H 1.08999 * 109.58822 * 294.84491 * 13 12 10 42 42 H 0.97006 * 119.99495 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47070 * 60.00061 * 25 23 14 44 44 H 1.09001 * 109.46847 * 180.02562 * 25 23 14 45 45 H 1.08992 * 109.47248 * 300.00134 * 25 23 14 46 46 H 1.08994 * 109.50049 * 301.33951 * 26 10 9 47 47 H 1.09000 * 109.49406 * 61.44042 * 26 10 9 48 48 H 1.08002 * 125.98830 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2898 2.0675 -0.8917 6 6 5.6000 1.8181 -0.5357 7 6 6.8042 2.3064 -1.2321 8 8 6.6933 3.0011 -2.2239 9 7 8.0280 1.9827 -0.7693 10 6 9.2246 2.4675 -1.4617 11 1 9.0353 3.4647 -1.8590 12 6 9.5687 1.5175 -2.6112 13 6 10.7998 2.0461 -3.3540 14 7 11.8881 2.2417 -2.3865 15 6 13.1146 1.6681 -2.5907 16 1 13.7336 1.4022 -1.7465 17 6 13.5625 1.4286 -3.8825 18 7 12.9652 2.0055 -4.9036 19 14 15.0127 0.2873 -4.1718 20 1 14.5209 -1.1025 -4.3504 21 1 15.7432 0.7146 -5.3920 22 1 15.9268 0.3425 -3.0028 23 6 11.6354 3.0649 -1.1960 24 1 11.4629 4.0984 -1.4963 25 6 12.8440 2.9978 -0.2601 26 6 10.3950 2.5249 -0.4772 27 6 5.5708 1.0082 0.6216 28 7 4.3223 0.7966 0.9348 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.9571 2.6570 -1.7333 37 1 8.1164 1.4283 0.0216 38 1 9.7826 0.5260 -2.2120 39 1 8.7257 1.4590 -3.2996 40 1 11.1084 1.3240 -4.1099 41 1 10.5590 2.9965 -3.8303 42 1 13.2784 1.8385 -5.8064 43 1 13.7265 3.3722 -0.7789 44 1 12.6544 3.6087 0.6225 45 1 13.0118 1.9644 0.0430 46 1 10.1401 3.1835 0.3530 47 1 10.6010 1.5239 -0.0983 48 1 6.4314 0.6336 1.1559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947767807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:22:22 Heat of formation + Delta-G solvation = 26.651351 kcal Electronic energy + Delta-G solvation = -26858.093910 eV Core-core repulsion = 23141.885241 eV Total energy + Delta-G solvation = -3716.208669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.37432 -40.60935 -39.05772 -36.31445 -36.02126 -34.19264 -33.10512 -32.54137 -31.60328 -30.74154 -28.03370 -27.42882 -26.55723 -24.29376 -23.49870 -23.16116 -22.04149 -21.62013 -21.16199 -20.62732 -18.96856 -18.19701 -17.21941 -16.96360 -16.73379 -16.62733 -15.98917 -15.71416 -15.54869 -15.45309 -15.28717 -14.96765 -14.75515 -14.48506 -14.26706 -14.04568 -13.77142 -13.30031 -13.21169 -12.93367 -12.90478 -12.70305 -12.62973 -12.58394 -12.38990 -12.32612 -12.09967 -12.03620 -11.80091 -11.69002 -11.66037 -11.45627 -11.25023 -10.78930 -10.56809 -10.52335 -10.03571 -9.60386 -8.61788 -7.80357 -5.26822 0.54544 1.18556 1.38712 1.49184 1.50474 1.58886 2.34724 2.52130 2.55065 3.35257 3.42465 3.63451 3.78708 3.89393 3.89895 3.98084 4.12952 4.14225 4.26779 4.31638 4.32010 4.44846 4.52207 4.59015 4.66202 4.70129 4.78373 4.80599 4.81168 4.91739 5.00007 5.11863 5.13364 5.15075 5.16218 5.21593 5.35301 5.42938 5.43729 5.54161 5.59465 5.65476 5.75202 5.76695 5.87764 6.46307 6.51132 6.74229 7.20243 7.39675 7.92396 8.45271 9.26857 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.025731 B = 0.002329 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.931516 B =12018.797750 C =12372.306814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.120 3.880 4 N -0.357 5.357 5 C 0.129 3.871 6 C -0.313 4.313 7 C 0.590 3.410 8 O -0.597 6.597 9 N -0.706 5.706 10 C 0.165 3.835 11 H 0.055 0.945 12 C -0.130 4.130 13 C 0.183 3.817 14 N -0.603 5.603 15 C -0.245 4.245 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.942 5.942 19 Si 0.965 3.035 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.264 1.264 23 C 0.158 3.842 24 H 0.011 0.989 25 C -0.126 4.126 26 C -0.118 4.118 27 C 0.087 3.913 28 N -0.317 5.317 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.203 0.797 37 H 0.412 0.588 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.055 0.945 41 H -0.014 1.014 42 H 0.246 0.754 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.071 -2.596 15.032 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.135 5.135 5 C -0.024 4.024 6 C -0.328 4.328 7 C 0.380 3.620 8 O -0.479 6.479 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.073 0.927 12 C -0.170 4.170 13 C 0.056 3.944 14 N -0.327 5.327 15 C -0.375 4.375 16 H 0.099 0.901 17 C -0.255 4.255 18 N -0.589 5.589 19 Si 0.794 3.206 20 H -0.215 1.215 21 H -0.228 1.228 22 H -0.188 1.188 23 C 0.052 3.948 24 H 0.028 0.972 25 C -0.184 4.184 26 C -0.157 4.157 27 C -0.101 4.101 28 N -0.137 5.137 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.219 0.781 37 H 0.249 0.751 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.005 0.995 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -24.058 -2.690 15.062 28.511 hybrid contribution 1.541 -0.226 -1.350 2.061 sum -22.518 -2.916 13.712 26.525 Atomic orbital electron populations 1.21685 0.92670 1.02928 1.03085 1.21735 0.97793 0.94819 1.02597 1.22319 0.71484 0.99846 1.06229 1.48886 1.07991 1.37152 1.19481 1.23295 0.89983 0.94523 0.94551 1.20204 0.93035 1.15030 1.04517 1.17644 0.83179 0.78583 0.82643 1.90755 1.87493 1.41315 1.28370 1.45760 1.04448 1.53740 1.31697 1.20627 0.84146 0.96570 0.92652 0.92661 1.22312 0.97617 0.99351 0.97746 1.20460 0.85936 0.96565 0.91421 1.44430 1.08824 1.56693 1.22703 1.19568 0.94898 1.31435 0.91580 0.90125 1.25890 1.01132 1.01950 0.96523 1.70206 1.44763 1.45608 0.98312 0.85291 0.79550 0.78673 0.77116 1.21548 1.22848 1.18831 1.20656 0.94454 0.92160 0.87519 0.97164 1.21708 0.96874 1.01775 0.98035 1.22182 0.93376 1.02846 0.97294 1.24463 0.96007 0.95253 0.94362 1.77093 1.02158 1.20211 1.14211 0.91275 0.91928 0.91472 0.92383 0.91893 0.85657 0.88071 0.78054 0.75115 0.92062 0.93882 0.92621 0.99549 0.94511 0.94201 0.90427 0.92556 0.89208 0.90471 0.76840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 71.98 0.71 -0.13 16 2 C -0.13 -1.31 6.11 30.59 0.19 -1.12 16 3 C 0.12 1.14 6.49 86.38 0.56 1.70 16 4 N -0.36 -6.17 3.65 -346.30 -1.26 -7.43 16 5 C 0.13 2.57 11.25 84.28 0.95 3.52 16 6 C -0.31 -7.42 6.13 -20.15 -0.12 -7.54 16 7 C 0.59 18.07 7.78 86.67 0.67 18.75 16 8 O -0.60 -23.63 16.56 -4.04 -0.07 -23.70 16 9 N -0.71 -19.37 5.07 -445.66 -2.26 -21.63 16 10 C 0.16 5.73 2.42 45.02 0.11 5.83 16 11 H 0.06 2.25 7.57 -2.39 -0.02 2.23 16 12 C -0.13 -5.35 5.65 30.68 0.17 -5.18 16 13 C 0.18 9.35 5.29 86.36 0.46 9.81 16 14 N -0.60 -30.02 2.99 -675.20 -2.02 -32.04 16 15 C -0.24 -13.11 8.60 84.03 0.72 -12.39 16 16 H 0.08 4.09 6.21 -2.91 -0.02 4.07 16 17 C -0.06 -3.41 4.96 84.86 0.42 -2.99 16 18 N -0.94 -57.38 11.14 21.65 0.24 -57.14 16 19 Si 0.96 45.31 29.58 68.60 2.03 47.34 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 C 0.16 6.32 3.49 44.98 0.16 6.48 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 C -0.13 -4.36 7.95 71.98 0.57 -3.79 16 26 C -0.12 -3.65 4.85 30.67 0.15 -3.50 16 27 C 0.09 1.68 11.50 85.65 0.99 2.66 16 28 N -0.32 -6.53 12.34 -56.28 -0.69 -7.22 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.13 0.54 8.06 -2.39 -0.02 0.52 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.41 8.18 7.56 -92.71 -0.70 7.48 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 3.21 6.06 -2.38 -0.01 3.20 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 43 H 0.04 1.54 7.62 -2.39 -0.02 1.52 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.91 7.44 -2.39 -0.02 1.89 16 46 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.22 2.65 7.50 -2.91 -0.02 2.63 16 Total: -1.00 -75.87 385.25 2.92 -72.95 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.25 Total: 16.76 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.70 Total: 12.11 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -5.99 Total: -125.46 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.07 Total: -23.70 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.87 2.92 -72.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947767807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.600 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds