Wall clock time and date at job start Sat Apr 11 2020 00:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47428 * 2 1 4 4 N 1.46497 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.34262 * 125.75016 * 125.00270 * 4 3 2 6 6 C 1.38042 * 107.41278 * 180.02562 * 5 4 3 7 7 C 1.47433 * 126.41182 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99726 * 155.71604 * 7 6 5 9 9 N 1.34773 * 120.00471 * 335.72326 * 7 6 5 10 10 C 1.47424 * 125.64381 * 354.27128 * 9 7 6 11 11 C 1.54915 * 104.83236 * 204.09468 * 10 9 7 12 12 C 1.55153 * 101.58108 * 322.99356 * 11 10 9 13 13 H 1.09003 * 110.86771 * 277.06745 * 12 11 10 14 14 N 1.46497 * 110.72415 * 153.86573 * 12 11 10 15 15 C 1.46507 * 119.99510 * 305.02543 * 14 12 11 16 16 C 1.36932 * 120.00404 * 125.02031 * 14 12 11 17 17 H 1.07999 * 119.99600 * 334.57279 * 16 14 12 18 18 C 1.38807 * 120.00224 * 154.30236 * 16 14 12 19 19 N 1.31626 * 120.00111 * 354.26421 * 18 16 14 20 20 Si 1.86804 * 120.00231 * 174.26993 * 18 16 14 21 21 H 1.48503 * 109.47041 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47249 * 119.99747 * 20 18 16 23 23 H 1.48498 * 109.46946 * 239.99795 * 20 18 16 24 24 C 1.47016 * 125.65111 * 174.23285 * 9 7 6 25 25 C 1.41286 * 107.17462 * 0.22995 * 6 5 4 26 26 C 1.50699 * 125.98978 * 179.73751 * 25 6 5 27 27 N 1.30449 * 108.02086 * 359.61396 * 25 6 5 28 28 H 1.09004 * 109.46791 * 59.99185 * 1 2 3 29 29 H 1.08990 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46638 * 300.00262 * 1 2 3 31 31 H 1.09002 * 109.46634 * 240.00526 * 2 1 3 32 32 H 1.08996 * 109.47138 * 120.00896 * 2 1 3 33 33 H 1.08999 * 109.46527 * 60.00148 * 3 2 1 34 34 H 1.08997 * 109.46969 * 300.00391 * 3 2 1 35 35 H 1.07996 * 126.29427 * 0.04586 * 5 4 3 36 36 H 1.09000 * 110.36796 * 322.92854 * 10 9 7 37 37 H 1.08993 * 110.36828 * 85.14612 * 10 9 7 38 38 H 1.08995 * 111.00262 * 204.91563 * 11 10 9 39 39 H 1.09006 * 111.00043 * 81.06311 * 11 10 9 40 40 H 1.09002 * 109.46733 * 274.47569 * 15 14 12 41 41 H 1.08996 * 109.47782 * 34.47781 * 15 14 12 42 42 H 1.09003 * 109.47054 * 154.48676 * 15 14 12 43 43 H 0.96996 * 120.00102 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.88444 * 59.55659 * 24 9 7 45 45 H 1.08997 * 110.01515 * 298.45941 * 24 9 7 46 46 H 1.09004 * 109.47305 * 90.00036 * 26 25 6 47 47 H 1.09001 * 109.47399 * 209.99990 * 26 25 6 48 48 H 1.09003 * 109.47530 * 329.99894 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2892 2.0675 -0.8934 6 6 5.5996 1.8178 -0.5386 7 6 6.8033 2.3053 -1.2365 8 8 7.8544 2.4112 -0.6340 9 7 6.7389 2.6338 -2.5420 10 6 5.5693 2.4434 -3.4190 11 6 6.1552 2.3720 -4.8514 12 6 7.3036 3.4121 -4.7703 13 1 6.9246 4.4220 -4.9272 14 7 8.3560 3.0990 -5.7402 15 6 8.9844 1.7755 -5.7374 16 6 8.7522 4.0432 -6.6494 17 1 8.0714 4.8279 -6.9443 18 6 10.0308 3.9949 -7.1876 19 7 10.8994 3.1119 -6.7424 20 14 10.5188 5.1832 -8.5438 21 1 9.3699 6.0682 -8.8636 22 1 11.6677 6.0074 -8.0901 23 1 10.9064 4.4184 -9.7563 24 6 7.8229 3.2419 -3.3271 25 6 5.5714 1.0026 0.6151 26 6 6.7728 0.4737 1.3552 27 7 4.3231 0.7903 0.9287 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9559 2.6576 -1.7343 36 1 5.0572 1.5134 -3.1719 37 1 4.8859 3.2876 -3.3286 38 1 5.4124 2.6670 -5.5924 39 1 6.5442 1.3764 -5.0652 40 1 9.8015 1.7629 -5.0161 41 1 8.2454 1.0229 -5.4626 42 1 9.3740 1.5563 -6.7315 43 1 11.7930 3.0784 -7.1182 44 1 8.6958 2.5891 -3.3218 45 1 8.0850 4.2144 -2.9104 46 1 7.0665 1.1854 2.1268 47 1 6.5232 -0.4812 1.8178 48 1 7.5977 0.3342 0.6565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972611346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:43 Heat of formation + Delta-G solvation = 66.018282 kcal Electronic energy + Delta-G solvation = -27347.648767 eV Core-core repulsion = 23633.147176 eV Total energy + Delta-G solvation = -3714.501591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.54095 -39.31511 -37.24929 -35.79254 -34.78396 -32.73892 -31.81216 -30.46867 -29.63328 -28.96038 -27.72166 -26.07189 -25.92316 -23.88238 -22.61428 -22.15056 -21.55103 -20.33906 -19.15111 -18.93721 -17.04438 -17.01254 -16.37599 -16.11074 -15.68592 -15.20652 -14.96880 -14.61032 -14.38148 -14.03263 -13.67125 -13.35069 -13.32123 -13.12077 -12.78999 -12.64807 -12.59784 -12.34392 -12.31957 -12.19798 -12.06129 -11.78653 -11.72582 -11.43327 -11.32957 -10.89790 -10.87040 -10.76397 -10.54767 -10.37433 -10.26346 -9.92228 -9.82767 -9.54060 -9.42319 -8.70606 -8.55375 -8.17253 -6.77616 -5.78002 -3.26822 1.47805 2.15715 2.19613 3.33059 3.37037 3.42789 3.44696 3.59323 4.03945 4.36770 4.44821 4.46960 4.56456 4.72527 4.83875 4.95266 5.00266 5.03428 5.12280 5.22136 5.28720 5.37243 5.46001 5.47350 5.52925 5.57889 5.65235 5.71020 5.76036 5.82267 5.89315 5.92714 5.96657 6.02152 6.35857 6.40619 6.48873 6.59073 6.67263 6.78160 6.89653 6.91961 7.39808 7.51279 7.71699 7.79798 7.93456 8.38102 8.57694 9.19605 9.80428 10.30864 11.27597 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002736 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.360136 B =10231.483501 C =11087.360220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.131 3.869 4 N -0.362 5.362 5 C 0.093 3.907 6 C -0.276 4.276 7 C 0.601 3.399 8 O -0.543 6.543 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.154 4.154 12 C 0.172 3.828 13 H 0.078 0.922 14 N -0.586 5.586 15 C 0.160 3.840 16 C -0.260 4.260 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.905 5.905 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.089 3.911 25 C 0.128 3.872 26 C -0.072 4.072 27 N -0.302 5.302 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.184 0.816 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.018 0.982 41 H -0.004 1.004 42 H 0.063 0.937 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.617 -5.103 11.977 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.010 3.990 4 N -0.141 5.141 5 C -0.057 4.057 6 C -0.291 4.291 7 C 0.390 3.610 8 O -0.422 6.422 9 N -0.344 5.344 10 C -0.023 4.023 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.306 5.306 15 C 0.015 3.985 16 C -0.389 4.389 17 H 0.088 0.912 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.738 3.262 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.216 1.216 24 C -0.036 4.036 25 C -0.039 4.039 26 C -0.130 4.130 27 N -0.124 5.124 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.201 0.799 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.036 0.964 41 H 0.014 0.986 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.797 -5.655 13.094 25.218 hybrid contribution 0.769 1.135 -1.342 1.919 sum -20.028 -4.521 11.752 23.657 Atomic orbital electron populations 1.21713 0.94331 1.02608 1.02155 1.21804 0.96419 0.95225 1.04010 1.21899 0.73660 0.99333 1.04098 1.48439 1.06611 1.38290 1.20724 1.23340 0.90489 0.96842 0.95021 1.20280 0.92701 1.13083 1.03009 1.16915 0.86878 0.77159 0.80019 1.90758 1.30711 1.54788 1.65902 1.48358 1.15988 1.61727 1.08363 1.22412 0.88840 0.99953 0.91127 1.23336 0.99615 1.02698 0.93719 1.21374 0.89180 0.96448 0.86820 0.90423 1.43905 1.41624 1.11260 1.33840 1.20836 0.92829 0.83267 1.01535 1.19268 0.95513 1.07562 1.16574 0.91224 1.25161 0.95533 0.98553 1.00164 1.70066 1.05064 1.36538 1.43241 0.86137 0.78283 0.80487 0.81322 1.20271 1.21593 1.21616 1.22858 0.90416 0.97565 0.92712 1.22431 0.93369 0.94728 0.93413 1.20242 0.92357 1.00514 0.99912 1.77093 1.01108 1.20558 1.13628 0.92322 0.91875 0.92296 0.91222 0.90274 0.89498 0.88377 0.79934 0.91414 0.92088 0.90510 0.90318 0.96395 0.98586 0.91789 0.93593 0.90815 0.92269 0.90048 0.91170 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.28 16 2 C -0.14 -0.86 6.11 -26.73 -0.16 -1.02 16 3 C 0.13 0.85 6.49 -4.04 -0.03 0.82 16 4 N -0.36 -3.85 3.65 -60.81 -0.22 -4.08 16 5 C 0.09 1.04 9.63 -16.56 -0.16 0.88 16 6 C -0.28 -4.04 5.79 -105.07 -0.61 -4.65 16 7 C 0.60 10.63 7.71 -12.52 -0.10 10.53 16 8 O -0.54 -11.44 15.96 5.27 0.08 -11.36 16 9 N -0.61 -10.23 3.33 -171.78 -0.57 -10.80 16 10 C 0.10 1.29 5.20 -2.53 -0.01 1.28 16 11 C -0.15 -2.37 6.62 -24.58 -0.16 -2.53 16 12 C 0.17 3.35 3.45 -66.10 -0.23 3.12 16 13 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 14 N -0.59 -14.19 2.93 -171.39 -0.50 -14.69 16 15 C 0.16 3.89 7.99 59.85 0.48 4.37 16 16 C -0.26 -6.89 9.60 -15.06 -0.14 -7.04 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C 0.00 0.13 5.18 -17.43 -0.09 0.04 16 19 N -0.90 -26.07 10.55 55.49 0.59 -25.49 16 20 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.09 1.75 6.51 -3.06 -0.02 1.73 16 25 C 0.13 1.83 7.26 -82.02 -0.60 1.23 16 26 C -0.07 -0.90 9.81 36.01 0.35 -0.55 16 27 N -0.30 -4.01 12.33 33.89 0.42 -3.59 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.18 1.48 5.90 -52.49 -0.31 1.17 16 36 H 0.07 0.77 6.94 -51.93 -0.36 0.41 16 37 H 0.06 0.63 7.28 -51.93 -0.38 0.25 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.33 6.07 -51.93 -0.32 1.01 16 40 H 0.02 0.47 7.41 -51.93 -0.38 0.09 16 41 H 0.00 -0.09 6.07 -51.93 -0.32 -0.40 16 42 H 0.06 1.70 6.66 -51.93 -0.35 1.35 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.07 1.69 6.83 -51.93 -0.35 1.33 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.22 7.27 -51.93 -0.38 0.84 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -33.24 380.87 -8.35 -41.58 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.75 Total: -1.67 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.11 Total: 7.95 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.29 Total: -58.64 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.24 -8.35 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972611346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.601 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds