Wall clock time and date at job start Sat Apr 11 2020 00:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 N 1.46504 * 109.46963 * 119.99936 * 2 1 3 5 5 C 1.35843 * 126.13542 * 299.99390 * 4 2 1 6 6 N 1.30178 * 109.00398 * 179.76616 * 5 4 2 7 7 C 1.35751 * 108.86335 * 0.38499 * 6 5 4 8 8 C 1.47333 * 126.23267 * 179.88086 * 7 6 5 9 9 O 1.21623 * 119.99468 * 179.68912 * 8 7 6 10 10 N 1.34772 * 120.00102 * 359.69541 * 8 7 6 11 11 C 1.46496 * 120.00151 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47021 * 324.99552 * 11 10 8 13 13 C 1.53005 * 109.47414 * 84.99440 * 11 10 8 14 14 C 1.52997 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 11 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 13 17 17 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 18 18 N 1.46500 * 109.47023 * 179.97438 * 16 15 14 19 19 C 1.36931 * 119.99971 * 274.99678 * 18 16 15 20 20 H 1.08005 * 120.00425 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00553 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47166 * 89.99808 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00188 * 23 21 19 26 26 H 1.48508 * 109.46891 * 329.99990 * 23 21 19 27 27 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 28 28 C 1.35377 * 126.13396 * 120.00467 * 4 2 1 29 29 H 1.09001 * 109.46695 * 299.99869 * 1 2 3 30 30 H 1.08994 * 109.47321 * 59.99961 * 1 2 3 31 31 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47034 * 239.99440 * 2 1 3 33 33 H 1.08996 * 109.47031 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47245 * 299.99925 * 3 2 1 35 35 H 1.09004 * 109.47147 * 59.99904 * 3 2 1 36 36 H 1.08004 * 125.49778 * 359.97438 * 5 4 2 37 37 H 0.96994 * 119.99727 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46935 * 60.00059 * 13 11 10 39 39 H 1.09001 * 109.46812 * 300.00401 * 13 11 10 40 40 H 1.08993 * 109.47194 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.46695 * 59.99734 * 14 13 11 42 42 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 43 43 H 1.09004 * 109.46733 * 179.97438 * 15 14 13 44 44 H 0.97004 * 120.00223 * 94.99655 * 18 16 15 45 45 H 0.96997 * 119.99679 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.47853 * 180.02562 * 27 16 15 47 47 H 1.09002 * 109.47153 * 300.00319 * 27 16 15 48 48 H 1.08000 * 126.56616 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7682 -0.3368 2.4837 6 7 2.3595 -1.1817 3.2781 7 6 3.0170 -2.1028 2.5282 8 6 3.8145 -3.2319 3.0378 9 8 4.3536 -3.9956 2.2598 10 7 3.9465 -3.4185 4.3660 11 6 4.7391 -4.5415 4.8728 12 1 4.6217 -5.3979 4.2088 13 6 6.2143 -4.1396 4.9308 14 6 7.0421 -5.3127 5.4595 15 6 6.5596 -5.6860 6.8626 16 6 5.0844 -6.0879 6.8045 17 1 4.9670 -6.9441 6.1402 18 7 4.6226 -6.4459 8.1480 19 6 4.8144 -7.7162 8.6220 20 1 5.3058 -8.4543 8.0054 21 6 4.3764 -8.0556 9.8947 22 7 3.7771 -7.1563 10.6460 23 14 4.6387 -9.7882 10.5417 24 1 5.9462 -9.8626 11.2418 25 1 3.5490 -10.1328 11.4900 26 1 4.6293 -10.7468 9.4075 27 6 4.2566 -4.9149 6.2759 28 6 2.7999 -1.7958 1.2168 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.1720 0.5073 2.7976 37 1 3.5168 -2.8092 4.9864 38 1 6.3317 -3.2832 5.5948 39 1 6.5581 -3.8741 3.9311 40 1 8.0930 -5.0265 5.5004 41 1 6.9245 -6.1688 4.7951 42 1 6.6770 -4.8299 7.5269 43 1 7.1490 -6.5220 7.2390 44 1 4.1810 -5.7831 8.7017 45 1 3.4707 -7.3935 11.5352 46 1 3.2057 -5.2010 6.2349 47 1 4.3741 -4.0587 6.9402 48 1 3.1787 -2.3320 0.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981238268.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:25:17 Heat of formation + Delta-G solvation = -7.504367 kcal Electronic energy + Delta-G solvation = -26544.188533 eV Core-core repulsion = 22826.498761 eV Total energy + Delta-G solvation = -3717.689772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.21683 -40.83077 -39.15212 -36.91444 -36.21155 -34.76748 -32.93790 -32.12368 -31.13429 -30.17546 -29.27031 -28.19152 -25.72709 -24.81319 -24.01072 -23.16502 -22.24149 -21.50229 -21.15033 -20.50317 -19.16212 -18.43858 -17.44807 -17.33987 -16.64833 -16.48426 -16.03511 -15.67573 -15.47694 -15.31563 -15.11930 -14.97440 -14.91624 -14.79789 -14.60103 -14.20370 -13.91335 -13.54922 -13.40825 -13.16210 -13.10558 -12.90852 -12.79615 -12.37702 -12.26767 -12.17199 -12.14395 -12.03195 -11.96778 -11.63812 -11.55536 -11.38404 -11.24474 -10.93208 -10.85252 -10.74378 -10.08053 -9.58376 -8.99236 -7.92525 -5.20731 0.58421 1.45749 1.47528 1.49211 1.57586 1.65410 2.28444 2.55544 2.58159 3.40091 3.42551 3.59145 3.64447 3.83856 3.87277 3.94940 4.04640 4.09826 4.14948 4.28751 4.31876 4.41496 4.48731 4.53304 4.57919 4.65993 4.68697 4.68903 4.76418 4.83645 4.85904 5.03748 5.05148 5.12741 5.17950 5.22762 5.25247 5.25967 5.36027 5.47553 5.49847 5.51306 5.54885 5.66954 6.12618 6.29852 6.52919 6.89040 7.26289 7.35686 8.11320 8.35588 9.31025 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.002183 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.979090 B =12822.474632 C =13423.010850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.160 4.160 4 N -0.443 5.443 5 C 0.196 3.804 6 N -0.496 5.496 7 C -0.098 4.098 8 C 0.599 3.401 9 O -0.582 6.582 10 N -0.704 5.704 11 C 0.159 3.841 12 H 0.072 0.928 13 C -0.115 4.115 14 C -0.104 4.104 15 C -0.126 4.126 16 C 0.178 3.822 17 H 0.038 0.962 18 N -0.736 5.736 19 C -0.236 4.236 20 H 0.074 0.926 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.114 4.114 28 C 0.042 3.958 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.242 0.758 37 H 0.412 0.588 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 21.473 -26.062 34.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.218 4.218 4 N -0.124 5.124 5 C -0.088 4.088 6 N -0.215 5.215 7 C -0.226 4.226 8 C 0.387 3.613 9 O -0.463 6.463 10 N -0.353 5.353 11 C 0.054 3.946 12 H 0.090 0.910 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.166 4.166 16 C 0.069 3.931 17 H 0.057 0.943 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.092 0.908 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.153 4.153 28 C -0.099 4.099 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.258 0.742 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.619 20.818 -25.847 33.508 hybrid contribution -0.272 -0.656 0.569 0.910 sum -4.891 20.162 -25.277 32.701 Atomic orbital electron populations 1.22192 0.91778 1.02998 1.04910 1.21926 0.96499 0.94686 0.84988 1.22186 1.01570 0.93120 1.04905 1.45915 1.36415 1.20920 1.09179 1.25660 1.02739 1.01672 0.78751 1.70565 1.12083 1.04915 1.33980 1.20443 1.09337 1.01005 0.91855 1.17277 0.78890 0.82899 0.82239 1.90746 1.50688 1.47532 1.57318 1.45844 1.52172 1.30587 1.06733 1.20804 0.90920 0.88731 0.94164 0.91020 1.21806 0.93587 0.98841 1.01129 1.21409 0.99579 0.97773 0.95554 1.22091 0.97539 1.00287 0.96703 1.20301 0.92372 0.94523 0.85865 0.94347 1.42589 1.70380 1.10567 1.14026 1.19606 1.30094 0.89359 0.97743 0.90819 1.25547 1.02157 1.01673 0.97656 1.69820 1.46827 1.34926 1.10494 0.85161 0.76759 0.80088 0.77906 1.21422 1.22239 1.19581 1.21864 0.99543 0.98912 0.94969 1.22785 0.96999 0.91068 0.99042 0.91017 0.88103 0.92931 0.86702 0.92746 0.88145 0.90995 0.74242 0.75240 0.91225 0.91938 0.90364 0.92038 0.92950 0.93643 0.79534 0.94103 0.92451 0.91086 0.78459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 9.24 71.98 0.67 0.23 16 2 C 0.12 0.55 3.57 44.99 0.16 0.71 16 3 C -0.16 -0.35 9.24 71.98 0.67 0.31 16 4 N -0.44 -5.57 2.59 -505.86 -1.31 -6.88 16 5 C 0.20 2.93 11.52 180.10 2.08 5.00 16 6 N -0.50 -11.71 11.01 -188.81 -2.08 -13.79 16 7 C -0.10 -2.55 6.98 40.51 0.28 -2.27 16 8 C 0.60 18.76 7.78 86.64 0.67 19.43 16 9 O -0.58 -21.15 16.54 -4.10 -0.07 -21.22 16 10 N -0.70 -20.96 5.07 -445.89 -2.26 -23.22 16 11 C 0.16 5.02 2.45 44.99 0.11 5.13 16 12 H 0.07 2.51 7.58 -2.39 -0.02 2.50 16 13 C -0.12 -3.32 5.49 30.60 0.17 -3.15 16 14 C -0.10 -3.08 5.92 30.59 0.18 -2.89 16 15 C -0.13 -4.63 5.50 30.60 0.17 -4.46 16 16 C 0.18 7.37 2.77 44.99 0.12 7.50 16 17 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 18 N -0.74 -38.30 5.12 -322.94 -1.65 -39.95 16 19 C -0.24 -13.48 9.93 84.03 0.83 -12.64 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 23 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 C -0.11 -4.01 4.86 30.59 0.15 -3.86 16 28 C 0.04 0.81 11.22 83.72 0.94 1.75 16 29 H 0.07 0.16 7.94 -2.39 -0.02 0.14 16 30 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.11 0.30 8.07 -2.39 -0.02 0.28 16 33 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.07 0.13 7.94 -2.39 -0.02 0.11 16 36 H 0.24 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.41 11.45 8.32 -92.71 -0.77 10.68 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 45 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -75.67 391.92 2.06 -73.61 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.54 Total: 35.70 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 7.66 Total: 6.63 kcal Atomic # 7 Polarization: -137.11 SS G_CDS: -7.02 Total: -144.13 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -75.67 2.06 -73.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981238268.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.109 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds