Wall clock time and date at job start Sat Apr 11 2020 00:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.52996 * 109.46969 * 240.00061 * 2 1 3 5 5 C 1.53002 * 109.46972 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47415 * 59.99860 * 5 4 2 7 7 H 1.09000 * 109.47140 * 59.99976 * 6 5 4 8 8 N 1.46500 * 109.47204 * 180.02562 * 6 5 4 9 9 C 1.34775 * 120.00366 * 274.99782 * 8 6 5 10 10 O 1.21845 * 119.99374 * 0.02562 * 9 8 6 11 11 N 1.33825 * 120.00256 * 180.02562 * 9 8 6 12 12 C 1.32932 * 119.99844 * 180.02562 * 11 9 8 13 13 C 1.41206 * 126.38237 * 0.02562 * 12 11 9 14 14 C 1.34954 * 108.24825 * 179.97438 * 13 12 11 15 15 N 1.36459 * 108.94691 * 0.02562 * 14 13 12 16 16 C 1.46492 * 125.85236 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47574 * 84.96857 * 16 15 14 18 18 H 1.08000 * 120.00091 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00407 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00331 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47074 * 60.00025 * 21 19 17 23 23 H 1.48498 * 109.47303 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47094 * 300.00496 * 21 19 17 25 25 N 1.37420 * 126.37788 * 179.71376 * 12 11 9 26 26 H 0.97007 * 126.36734 * 359.97438 * 25 12 11 27 27 C 1.53006 * 109.47164 * 300.00027 * 6 5 4 28 28 C 1.52997 * 109.47092 * 120.00120 * 2 1 3 29 29 H 1.09000 * 109.47140 * 59.99774 * 28 2 1 30 30 C 1.53006 * 109.46974 * 300.00168 * 28 2 1 31 31 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47067 * 300.00027 * 1 2 3 33 33 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 34 34 H 1.08992 * 109.47534 * 60.00418 * 4 2 1 35 35 H 1.08996 * 109.47134 * 299.99612 * 4 2 1 36 36 H 1.09000 * 109.46986 * 299.99742 * 5 4 2 37 37 H 1.09001 * 109.47601 * 180.02562 * 5 4 2 38 38 H 0.97001 * 119.99882 * 94.99976 * 8 6 5 39 39 H 1.08004 * 125.87409 * 0.03662 * 13 12 11 40 40 H 1.08002 * 125.52789 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47509 * 204.97246 * 16 15 14 42 42 H 1.09006 * 109.47322 * 324.96698 * 16 15 14 43 43 H 0.96996 * 120.00195 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.46955 * 180.02562 * 27 6 5 45 45 H 1.09000 * 109.47050 * 300.00004 * 27 6 5 46 46 H 1.09000 * 109.46866 * 299.99774 * 30 28 2 47 47 H 1.09001 * 109.47372 * 60.00182 * 30 28 2 48 48 H 1.09004 * 109.47107 * 179.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4709 0.0001 8 7 5.5445 -1.4433 0.0009 9 6 6.2188 -2.3992 -0.6686 10 8 5.6097 -3.2632 -1.2746 11 7 7.5570 -2.3995 -0.6676 12 6 8.2219 -3.3420 -1.3283 13 6 7.6565 -4.4008 -2.0722 14 6 8.6617 -5.1381 -2.5891 15 7 9.8529 -4.5940 -2.2054 16 6 11.1812 -5.1006 -2.5591 17 6 11.5858 -4.5536 -3.9037 18 1 10.9204 -3.8941 -4.4409 19 6 12.8061 -4.8941 -4.4477 20 7 13.6168 -5.6968 -3.7934 21 14 13.3080 -4.2154 -6.1141 22 1 13.3434 -2.7320 -6.0541 23 1 14.6544 -4.7291 -6.4727 24 1 12.3249 -4.6460 -7.1404 25 7 9.5877 -3.4641 -1.4195 26 1 10.2459 -2.8782 -1.0140 27 6 3.5695 -0.7221 1.2496 28 6 2.0400 -0.7213 1.2492 29 1 1.6766 -1.7489 1.2492 30 6 1.5299 0.0000 2.4985 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6768 -0.2074 -2.1392 35 1 1.6767 -1.7489 -1.2492 36 1 3.9337 0.3058 -1.2487 37 1 3.9334 -1.2352 -2.1391 38 1 6.0293 -0.7553 0.4831 39 1 6.6011 -4.5876 -2.2054 40 1 8.5428 -6.0163 -3.2063 41 1 11.9031 -4.7846 -1.8061 42 1 11.1550 -6.1895 -2.6028 43 1 14.4754 -5.9361 -4.1759 44 1 3.9329 -1.2359 2.1395 45 1 3.9332 0.3055 1.2498 46 1 1.8933 1.0276 2.4985 47 1 0.4399 0.0000 2.4985 48 1 1.8929 -0.5141 3.3885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543591450.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:22:14 Heat of formation + Delta-G solvation = 40.775747 kcal Electronic energy + Delta-G solvation = -26455.607913 eV Core-core repulsion = 22740.011723 eV Total energy + Delta-G solvation = -3715.596189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73381 -39.73182 -38.28231 -34.86009 -33.98393 -32.85823 -32.33753 -31.19403 -30.98095 -30.22668 -27.33234 -26.60845 -25.30054 -23.25335 -22.08266 -21.92025 -21.22445 -20.52105 -20.08567 -19.37136 -17.38902 -16.90146 -16.15748 -15.74206 -15.09741 -14.92892 -14.84625 -14.66999 -14.47394 -14.42795 -14.07578 -13.92758 -13.69544 -13.10345 -12.90459 -12.75930 -12.56746 -12.44670 -12.20463 -12.04458 -11.94040 -11.86955 -11.60174 -11.33967 -11.05647 -11.03166 -10.93538 -10.68337 -10.52531 -10.41829 -10.28887 -10.11610 -9.63187 -9.54397 -8.98341 -8.89872 -8.49603 -8.28634 -6.84938 -6.45875 -4.63516 1.83774 2.13513 3.08617 3.14079 3.16676 3.21819 3.66563 4.07938 4.46718 4.48640 4.54952 4.71043 4.74927 4.83365 4.88424 5.08726 5.26020 5.26822 5.31311 5.35728 5.41409 5.42180 5.48255 5.62946 5.64930 5.72989 5.78305 5.79850 5.86287 5.88580 6.01051 6.06834 6.13399 6.15109 6.21684 6.28147 6.39066 6.46907 6.56769 6.59106 6.79096 7.19292 7.40079 7.44333 7.53981 7.67908 7.91536 8.35916 8.46930 8.53371 9.06877 9.69802 10.54503 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.032001 B = 0.002037 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.772625 B =13743.950684 C =14086.969757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.129 4.129 6 C 0.166 3.834 7 H 0.082 0.918 8 N -0.728 5.728 9 C 0.685 3.315 10 O -0.632 6.632 11 N -0.715 5.715 12 C 0.487 3.513 13 C -0.334 4.334 14 C 0.160 3.840 15 N -0.347 5.347 16 C 0.256 3.744 17 C -0.558 4.558 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.887 5.887 21 Si 0.910 3.090 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 N -0.472 5.472 26 H 0.444 0.556 27 C -0.120 4.120 28 C -0.082 4.082 29 H 0.072 0.928 30 C -0.148 4.148 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.272 0.728 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.303 7.996 8.489 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.168 4.168 6 C 0.060 3.940 7 H 0.100 0.900 8 N -0.380 5.380 9 C 0.384 3.616 10 O -0.515 6.515 11 N -0.479 5.479 12 C 0.233 3.767 13 C -0.367 4.367 14 C 0.016 3.984 15 N -0.133 5.133 16 C 0.139 3.861 17 C -0.596 4.596 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.197 1.197 25 N -0.195 5.195 26 H 0.291 0.709 27 C -0.158 4.158 28 C -0.102 4.102 29 H 0.090 0.910 30 C -0.205 4.205 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.228 0.772 39 H 0.200 0.800 40 H 0.203 0.797 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.825 7.865 8.485 21.250 hybrid contribution 0.748 0.506 -0.883 1.263 sum -17.077 8.371 7.602 20.482 Atomic orbital electron populations 1.21894 0.95470 1.01791 1.01468 1.21196 0.95248 0.99580 0.94609 0.91284 1.21552 0.95406 1.00759 0.97173 1.21951 0.94988 1.00623 0.99256 1.20649 0.79631 1.00071 0.93685 0.90023 1.44782 1.05296 1.31555 1.56407 1.16626 0.85062 0.80901 0.78963 1.90718 1.72514 1.39667 1.48566 1.68052 1.08254 1.31780 1.39837 1.18713 0.81933 0.89094 0.86971 1.22391 1.01546 1.01104 1.11613 1.22795 0.83547 0.97520 0.94557 1.47956 1.08826 1.15566 1.40936 1.20015 0.73123 0.95815 0.97129 1.21391 1.03500 1.31682 1.03037 0.91293 1.24956 0.95615 0.94448 0.98523 1.69888 1.10182 1.33638 1.38665 0.86347 0.77891 0.79470 0.82667 1.19875 1.20826 1.19682 1.44438 1.06062 1.22085 1.46937 0.70946 1.21852 0.95328 1.00910 0.97745 1.21084 0.94513 0.99963 0.94594 0.90986 1.21883 1.01015 1.00401 0.97225 0.92720 0.92539 0.92905 0.92038 0.91803 0.92290 0.91301 0.77246 0.80024 0.79710 0.93145 0.91450 0.91820 0.91450 0.91634 0.92766 0.92393 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.84 37.16 0.33 -0.73 16 2 C -0.09 -0.73 2.25 -90.62 -0.20 -0.93 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 5 C -0.13 -1.60 5.49 -26.73 -0.15 -1.74 16 6 C 0.17 2.16 2.45 -67.93 -0.17 1.99 16 7 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 8 N -0.73 -11.30 5.08 -58.87 -0.30 -11.60 16 9 C 0.69 13.60 8.44 -87.77 -0.74 12.86 16 10 O -0.63 -13.85 12.93 5.06 0.07 -13.79 16 11 N -0.71 -14.40 10.59 -15.79 -0.17 -14.57 16 12 C 0.49 9.67 8.07 -155.29 -1.25 8.41 16 13 C -0.33 -6.39 9.52 -39.62 -0.38 -6.76 16 14 C 0.16 2.78 11.45 -16.66 -0.19 2.59 16 15 N -0.35 -6.55 3.63 -62.25 -0.23 -6.78 16 16 C 0.26 5.39 6.19 -5.20 -0.03 5.35 16 17 C -0.56 -13.38 9.39 -34.44 -0.32 -13.71 16 18 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -22.65 13.29 55.43 0.74 -21.91 16 21 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 25 N -0.47 -8.62 7.38 31.33 0.23 -8.39 16 26 H 0.44 7.16 8.96 -182.54 -1.64 5.52 16 27 C -0.12 -1.18 4.67 -26.75 -0.12 -1.30 16 28 C -0.08 -0.69 2.24 -90.64 -0.20 -0.90 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 C -0.15 -1.04 8.84 37.16 0.33 -0.71 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.39 5.46 8.70 -40.82 -0.36 5.11 16 39 H 0.18 3.67 5.77 -52.48 -0.30 3.37 16 40 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -28.83 384.31 -11.47 -40.31 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -9.24 Total: 11.74 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.34 Total: 4.81 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.27 Total: -63.25 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.83 -11.47 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543591450.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.082 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds