Wall clock time and date at job start Sat Apr 11 2020 00:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50700 * 119.99887 * 2 1 4 4 N 1.46496 * 109.47014 * 124.99739 * 3 2 1 5 5 C 1.36739 * 127.13487 * 86.12816 * 4 3 2 6 6 C 1.50702 * 126.35102 * 359.97438 * 5 4 3 7 7 H 1.09000 * 110.53658 * 0.87934 * 6 5 4 8 8 C 1.54811 * 110.48932 * 238.26051 * 6 5 4 9 9 C 1.54994 * 102.09139 * 220.44023 * 8 6 5 10 10 O 1.44376 * 103.49019 * 37.02612 * 9 8 6 11 11 C 1.43745 * 106.97626 * 319.93467 * 10 9 8 12 12 H 1.08999 * 109.87760 * 145.93673 * 11 10 9 13 13 C 1.52993 * 109.88178 * 267.09275 * 11 10 9 14 14 N 1.30304 * 107.30546 * 179.73474 * 5 4 3 15 15 N 1.28525 * 110.04822 * 0.26141 * 14 5 4 16 16 C 1.31215 * 109.86484 * 359.97438 * 15 14 5 17 17 N 1.38587 * 126.47248 * 179.97438 * 16 15 14 18 18 C 1.46892 * 111.00088 * 68.52686 * 17 16 15 19 19 C 1.46900 * 110.99891 * 304.57028 * 17 16 15 20 20 H 1.09002 * 109.46992 * 60.00156 * 19 17 16 21 21 C 1.52997 * 109.47503 * 299.99887 * 19 17 16 22 22 C 1.50703 * 109.46951 * 179.97438 * 19 17 16 23 23 H 1.08006 * 119.99942 * 0.02562 * 22 19 17 24 24 C 1.37877 * 120.00020 * 180.02562 * 22 19 17 25 25 N 1.31507 * 120.00025 * 0.02562 * 24 22 19 26 26 Si 1.86800 * 119.99993 * 180.02562 * 24 22 19 27 27 H 1.48506 * 109.47333 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47407 * 119.99974 * 26 24 22 29 29 H 1.48505 * 109.46964 * 240.00160 * 26 24 22 30 30 H 1.08000 * 119.99556 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99535 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99556 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47005 * 4.99615 * 3 2 1 34 34 H 1.08999 * 109.46967 * 244.99547 * 3 2 1 35 35 H 1.08996 * 110.90976 * 338.64186 * 8 6 5 36 36 H 1.09004 * 110.90111 * 102.24331 * 8 6 5 37 37 H 1.08998 * 110.61609 * 155.52793 * 9 8 6 38 38 H 1.08998 * 110.61709 * 278.52076 * 9 8 6 39 39 H 1.09003 * 109.47638 * 177.83388 * 13 11 10 40 40 H 1.09008 * 109.47353 * 297.82997 * 13 11 10 41 41 H 1.09000 * 109.47448 * 57.82869 * 13 11 10 42 42 H 1.09009 * 109.47207 * 54.07347 * 18 17 16 43 43 H 1.09000 * 109.47403 * 174.07460 * 18 17 16 44 44 H 1.09000 * 109.47055 * 294.07717 * 18 17 16 45 45 H 1.09000 * 109.46591 * 60.00371 * 21 19 17 46 46 H 1.08999 * 109.47285 * 180.02562 * 21 19 17 47 47 H 1.08999 * 109.47116 * 300.00638 * 21 19 17 48 48 H 0.97006 * 120.00456 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2670 0.8344 1.1653 6 6 4.9876 0.1467 0.0345 7 1 4.3553 0.1043 -0.8523 8 6 5.4249 -1.2770 0.4568 9 6 6.8386 -1.3818 -0.1699 10 8 7.3785 -0.0527 -0.0072 11 6 6.3111 0.8703 -0.2810 12 1 6.4117 1.7517 0.3523 13 6 6.3420 1.2790 -1.7550 14 7 4.7436 1.0698 2.3550 15 7 3.8629 1.6726 3.0711 16 6 2.7684 1.8561 2.3709 17 7 1.6050 2.4703 2.8066 18 6 1.8173 3.9078 3.0216 19 6 1.0934 1.8258 4.0236 20 1 1.8417 1.8946 4.8131 21 6 0.7921 0.3542 3.7333 22 6 -0.1689 2.5196 4.4667 23 1 -0.5529 3.3554 3.9006 24 6 -0.8335 2.0874 5.5947 25 7 -0.3656 1.0701 6.2843 26 14 -2.3986 2.9469 6.1435 27 1 -2.7110 4.0539 5.2041 28 1 -3.5203 1.9740 6.1533 29 1 -2.2082 3.4968 7.5099 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4026 -0.9313 35 1 5.4733 -1.3631 1.5423 36 1 4.7568 -2.0294 0.0377 37 1 7.4441 -2.1107 0.3687 38 1 6.7718 -1.6424 -1.2261 39 1 5.5075 1.9484 -1.9641 40 1 7.2804 1.7900 -1.9708 41 1 6.2603 0.3900 -2.3804 42 1 2.2291 4.3537 2.1161 43 1 0.8664 4.3838 3.2609 44 1 2.5141 4.0527 3.8472 45 1 1.7054 -0.1473 3.4131 46 1 0.4121 -0.1238 4.6362 47 1 0.0439 0.2854 2.9437 48 1 -0.8330 0.7661 7.0781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592398468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:11 Heat of formation + Delta-G solvation = 49.043076 kcal Electronic energy + Delta-G solvation = -28688.601426 eV Core-core repulsion = 24973.363735 eV Total energy + Delta-G solvation = -3715.237691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.03481 -40.58557 -38.76438 -37.11410 -34.99186 -34.19381 -33.48453 -32.18201 -31.37938 -30.40068 -28.14142 -27.39234 -27.03732 -26.06131 -23.89972 -23.18026 -22.63963 -21.75545 -20.88752 -20.64962 -18.55820 -18.20194 -17.60528 -17.46480 -17.10225 -16.67830 -16.37690 -16.03841 -15.72492 -15.38890 -15.18512 -14.93812 -14.45696 -14.29314 -14.19855 -13.81888 -13.64154 -13.37437 -13.08904 -13.06590 -12.85226 -12.81657 -12.69947 -12.54802 -12.47258 -12.32471 -12.23677 -12.20342 -12.09354 -11.98385 -11.94080 -11.49460 -11.08942 -11.00135 -10.67284 -10.59406 -10.45847 -9.91515 -9.52717 -8.14567 -6.28958 0.69194 1.02458 1.44298 1.45619 1.57392 1.65728 1.80112 2.41679 2.87356 3.01727 3.17111 3.23381 3.53238 3.61835 3.77732 3.93564 3.95422 4.11166 4.15533 4.20019 4.27079 4.36283 4.39737 4.52550 4.61464 4.64531 4.67549 4.73902 4.80545 4.85126 4.86871 4.90145 4.93077 4.95389 5.01901 5.09389 5.10760 5.16658 5.29929 5.38013 5.55090 5.61701 5.63811 5.72530 5.89465 5.96190 5.97573 6.14291 6.62025 6.82121 7.40435 7.77008 8.92863 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.003593 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.707141 B = 7791.875467 C = 8048.375395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.194 4.194 3 C 0.136 3.864 4 N -0.457 5.457 5 C 0.186 3.814 6 C -0.022 4.022 7 H 0.136 0.864 8 C -0.143 4.143 9 C 0.049 3.951 10 O -0.392 6.392 11 C 0.087 3.913 12 H 0.067 0.933 13 C -0.162 4.162 14 N -0.324 5.324 15 N -0.366 5.366 16 C 0.368 3.632 17 N -0.461 5.461 18 C 0.052 3.948 19 C 0.237 3.763 20 H -0.033 1.033 21 C -0.102 4.102 22 C -0.520 4.520 23 H 0.075 0.925 24 C 0.013 3.987 25 N -0.922 5.922 26 Si 0.969 3.031 27 H -0.258 1.258 28 H -0.280 1.280 29 H -0.286 1.286 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.012 0.988 45 H -0.006 1.006 46 H 0.062 0.938 47 H 0.044 0.956 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -3.194 -21.923 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.213 4.213 3 C 0.015 3.985 4 N -0.150 5.150 5 C -0.082 4.082 6 C -0.042 4.042 7 H 0.154 0.846 8 C -0.182 4.182 9 C -0.027 4.027 10 O -0.311 6.311 11 C 0.028 3.972 12 H 0.085 0.915 13 C -0.219 4.219 14 N -0.163 5.163 15 N -0.209 5.209 16 C 0.010 3.990 17 N -0.187 5.187 18 C -0.095 4.095 19 C 0.132 3.868 20 H -0.016 1.016 21 C -0.161 4.161 22 C -0.558 4.558 23 H 0.093 0.907 24 C -0.186 4.186 25 N -0.561 5.561 26 Si 0.794 3.206 27 H -0.182 1.182 28 H -0.206 1.206 29 H -0.212 1.212 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.030 0.970 45 H 0.013 0.987 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.830 -3.219 -20.921 22.242 hybrid contribution -1.249 0.256 0.910 1.566 sum 5.581 -2.964 -20.011 20.985 Atomic orbital electron populations 1.24104 0.95694 1.03150 0.95257 1.22963 0.96562 0.97424 1.04376 1.21249 0.91910 0.98452 0.86877 1.46571 1.13160 1.43231 1.11997 1.24986 0.83697 1.01794 0.97765 1.21221 0.96046 0.94398 0.92579 0.84584 1.23233 0.98691 0.94622 1.01643 1.23730 0.92534 0.84801 1.01593 1.88919 1.34298 1.16724 1.91182 1.22706 0.84331 0.92375 0.97781 0.91529 1.22249 1.03399 1.03043 0.93247 1.73867 1.24508 1.15917 1.02045 1.74619 1.00388 1.19150 1.26738 1.22716 0.92857 0.99113 0.84301 1.59200 1.19328 1.04024 1.36154 1.22235 1.02183 0.85477 0.99613 1.19051 0.93445 0.91848 0.82496 1.01550 1.21471 0.96618 0.97143 1.00843 1.21359 1.08149 1.16127 1.10142 0.90650 1.25779 1.00990 0.95620 0.96236 1.70070 1.41105 1.27075 1.17898 0.85344 0.78701 0.78635 0.77968 1.18161 1.20584 1.21206 0.87810 0.86955 0.86636 0.87827 0.84869 0.92657 0.87008 0.88082 0.88841 0.90255 0.91612 0.89993 0.90902 0.88944 0.96960 0.98746 0.91968 0.93720 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 14.32 67.77 0.97 -2.14 16 2 C -0.19 -4.22 9.85 25.64 0.25 -3.97 16 3 C 0.14 3.00 6.27 85.63 0.54 3.54 16 4 N -0.46 -14.69 2.79 -518.91 -1.45 -16.14 16 5 C 0.19 5.95 6.35 137.64 0.87 6.83 16 6 C -0.02 -0.45 3.08 -10.55 -0.03 -0.48 16 7 H 0.14 1.79 6.67 -2.39 -0.02 1.77 16 8 C -0.14 -2.82 6.70 31.89 0.21 -2.61 16 9 C 0.05 0.82 7.66 72.66 0.56 1.38 16 10 O -0.39 -9.49 11.19 -148.98 -1.67 -11.16 16 11 C 0.09 1.88 3.75 30.96 0.12 2.00 16 12 H 0.07 1.87 7.66 -2.39 -0.02 1.85 16 13 C -0.16 -2.20 9.30 71.98 0.67 -1.53 16 14 N -0.32 -13.73 12.02 -49.53 -0.60 -14.32 16 15 N -0.37 -17.58 12.03 -58.00 -0.70 -18.28 16 16 C 0.37 15.49 5.07 260.11 1.32 16.81 16 17 N -0.46 -20.12 4.65 -711.00 -3.31 -23.43 16 18 C 0.05 2.07 9.14 127.69 1.17 3.24 16 19 C 0.24 12.49 1.97 44.17 0.09 12.58 16 20 H -0.03 -2.08 8.03 -2.39 -0.02 -2.10 16 21 C -0.10 -5.27 8.85 71.98 0.64 -4.63 16 22 C -0.52 -27.68 7.95 25.60 0.20 -27.47 16 23 H 0.08 3.81 6.40 -2.91 -0.02 3.79 16 24 C 0.01 0.70 5.30 84.66 0.45 1.15 16 25 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 26 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 30 H 0.10 2.25 7.84 -2.91 -0.02 2.23 16 31 H 0.11 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.10 2.40 7.79 -2.39 -0.02 2.38 16 34 H 0.13 1.78 7.42 -2.39 -0.02 1.76 16 35 H 0.05 1.52 7.76 -2.39 -0.02 1.50 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 0.96 8.11 -2.39 -0.02 0.94 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 0.78 8.11 -2.39 -0.02 0.77 16 42 H 0.07 2.41 8.10 -2.38 -0.02 2.39 16 43 H 0.09 3.56 6.31 -2.39 -0.02 3.55 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H -0.01 -0.34 7.22 -2.39 -0.02 -0.36 16 46 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 47 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -74.62 387.21 3.50 -71.12 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.93 Total: 16.53 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 8.02 Total: 4.68 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -5.81 Total: -125.57 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.67 Total: -11.16 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.62 3.50 -71.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592398468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.164 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds