Wall clock time and date at job start Sat Apr 11 2020 00:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.86781 * 2 1 4 4 O 1.43743 * 109.87912 * 238.83736 * 2 1 3 5 5 C 1.44374 * 106.97420 * 267.09354 * 4 2 1 6 6 C 1.54994 * 103.49035 * 319.93571 * 5 4 2 7 7 C 1.54098 * 109.87739 * 121.00352 * 2 1 3 8 8 H 1.08997 * 110.48696 * 358.58959 * 7 2 1 9 9 C 1.50694 * 110.48997 * 236.06860 * 7 2 1 10 10 N 1.30295 * 126.34919 * 300.04701 * 9 7 2 11 11 N 1.28522 * 110.05474 * 179.97438 * 10 9 7 12 12 C 1.31217 * 109.86094 * 359.74548 * 11 10 9 13 13 N 1.38590 * 126.47587 * 180.25959 * 12 11 10 14 14 C 1.46846 * 110.99696 * 235.95756 * 13 12 11 15 15 C 1.53038 * 109.51885 * 185.83404 * 14 13 12 16 16 C 1.53113 * 109.28320 * 300.82339 * 15 14 13 17 17 C 1.53123 * 109.15797 * 57.65699 * 16 15 14 18 18 H 1.08997 * 109.50281 * 62.28336 * 17 16 15 19 19 C 1.50703 * 109.53485 * 182.38578 * 17 16 15 20 20 H 1.08001 * 120.00107 * 119.81674 * 19 17 16 21 21 C 1.37875 * 119.99966 * 299.82079 * 19 17 16 22 22 N 1.31510 * 120.00349 * 180.02562 * 21 19 17 23 23 Si 1.86801 * 119.99886 * 0.02562 * 21 19 17 24 24 H 1.48501 * 109.47456 * 89.99736 * 23 21 19 25 25 H 1.48503 * 109.47006 * 210.00231 * 23 21 19 26 26 H 1.48499 * 109.47315 * 329.99761 * 23 21 19 27 27 C 1.46845 * 110.99774 * 0.16779 * 13 12 11 28 28 N 1.36454 * 107.05437 * 0.39831 * 12 11 10 29 29 C 1.46499 * 127.13901 * 179.87160 * 28 12 11 30 30 H 1.09008 * 109.47426 * 298.99521 * 1 2 3 31 31 H 1.09006 * 109.47694 * 58.99144 * 1 2 3 32 32 H 1.08996 * 109.47309 * 178.99370 * 1 2 3 33 33 H 1.08997 * 110.62641 * 78.44313 * 5 4 2 34 34 H 1.09001 * 110.61400 * 201.43683 * 5 4 2 35 35 H 1.09008 * 110.90854 * 278.83075 * 6 5 4 36 36 H 1.09003 * 110.90889 * 155.22498 * 6 5 4 37 37 H 1.08998 * 109.46625 * 305.85548 * 14 13 12 38 38 H 1.09005 * 109.45970 * 65.82400 * 14 13 12 39 39 H 1.09000 * 109.49958 * 180.87722 * 15 14 13 40 40 H 1.09002 * 109.53204 * 60.79232 * 15 14 13 41 41 H 1.09000 * 109.52472 * 297.75119 * 16 15 14 42 42 H 1.08999 * 109.57507 * 177.58890 * 16 15 14 43 43 H 0.96998 * 120.00649 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.46246 * 294.17865 * 27 13 12 45 45 H 1.09007 * 109.45880 * 54.16112 * 27 13 12 46 46 H 1.09002 * 109.47391 * 269.68812 * 29 28 12 47 47 H 1.09001 * 109.46813 * 149.68869 * 29 28 12 48 48 H 1.09004 * 109.47041 * 29.68996 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2279 -2.0724 -0.7619 6 6 2.8324 -1.9515 0.6602 7 6 2.0539 -0.7465 1.2421 8 1 1.2237 -1.0885 1.8601 9 6 2.9743 0.1399 2.0410 10 7 4.0840 0.6787 1.6215 11 7 4.6179 1.3757 2.5601 12 6 3.8686 1.3229 3.6360 13 7 4.1177 1.9525 4.8452 14 6 4.1411 0.9833 5.9481 15 6 4.2727 1.7266 7.2793 16 6 5.5626 2.5515 7.2725 17 6 5.5339 3.5192 6.0861 18 1 4.6986 4.2101 6.2001 19 6 6.8252 4.2947 6.0370 20 1 7.4628 4.2273 5.1679 21 6 7.1926 5.0900 7.1016 22 7 8.3192 5.7671 7.0586 23 14 6.0902 5.2058 8.6051 24 1 6.4712 4.1530 9.5807 25 1 6.2476 6.5425 9.2326 26 1 4.6752 5.0141 8.1974 27 6 5.3659 2.7239 4.7895 28 7 2.7993 0.5283 3.3403 29 6 1.6908 0.1706 4.2288 30 1 -0.3634 0.4982 0.8989 31 1 -0.3635 0.5294 -0.8808 32 1 -0.3634 -1.0275 -0.0180 33 1 1.2813 -2.6118 -0.7321 34 1 2.9294 -2.5631 -1.4366 35 1 3.9003 -1.7382 0.6122 36 1 2.6431 -2.8541 1.2413 37 1 3.2165 0.4061 5.9442 38 1 4.9896 0.3105 5.8223 39 1 4.3058 1.0061 8.0966 40 1 3.4176 2.3892 7.4128 41 1 6.4204 1.8856 7.1788 42 1 5.6397 3.1164 8.2015 43 1 8.5779 6.3264 7.8077 44 1 6.2085 2.0431 4.6692 45 1 5.3306 3.4112 3.9441 46 1 1.9369 -0.7451 4.7664 47 1 0.7881 0.0138 3.6383 48 1 1.5225 0.9770 4.9426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597275055.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:40 Heat of formation + Delta-G solvation = 45.656849 kcal Electronic energy + Delta-G solvation = -28106.441685 eV Core-core repulsion = 24391.057156 eV Total energy + Delta-G solvation = -3715.384529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95327 -39.87201 -38.68180 -35.13930 -34.25280 -33.03179 -32.13523 -31.56385 -30.50452 -29.09016 -27.75144 -26.43800 -25.19179 -24.22234 -22.78256 -21.97420 -21.58694 -20.88135 -20.15692 -18.96978 -17.56342 -17.02684 -16.55806 -16.35855 -16.27842 -15.82646 -15.15904 -14.71075 -14.47063 -14.27207 -14.15329 -13.66170 -13.56896 -13.33194 -13.22835 -13.05316 -12.85072 -12.58732 -12.39410 -12.30036 -12.28545 -11.65847 -11.44884 -11.36234 -11.29816 -11.22878 -11.15467 -10.71646 -10.39333 -10.26400 -10.17817 -10.05888 -9.96511 -9.84365 -9.49653 -9.28149 -9.00668 -8.55835 -7.94206 -6.08750 -4.08905 1.79458 2.23577 2.95708 3.23398 3.34974 3.37466 3.57501 3.85375 4.02671 4.23979 4.35814 4.38282 4.46559 4.64236 4.78591 4.80611 4.85485 4.93259 5.00881 5.06720 5.09053 5.17927 5.19878 5.20253 5.32508 5.43656 5.47795 5.50796 5.62674 5.70207 5.76222 5.82076 5.89842 5.91257 5.99506 6.05184 6.17312 6.27406 6.49907 6.54500 6.62972 6.63992 6.74695 6.99437 7.11972 7.42381 7.51055 7.73334 8.48972 8.94373 8.96167 9.52120 11.04399 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.002965 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.298928 B = 9442.723267 C = 9851.167446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 H 0.100 0.900 4 O -0.362 6.362 5 C 0.048 3.952 6 C -0.144 4.144 7 C -0.023 4.023 8 H 0.097 0.903 9 C 0.160 3.840 10 N -0.268 5.268 11 N -0.319 5.319 12 C 0.378 3.622 13 N -0.454 5.454 14 C 0.059 3.941 15 C -0.119 4.119 16 C -0.127 4.127 17 C 0.021 3.979 18 H 0.037 0.963 19 C -0.514 4.514 20 H 0.077 0.923 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.886 3.114 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.264 1.264 27 C 0.093 3.907 28 N -0.489 5.489 29 C 0.075 3.925 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.264 0.736 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.126 -18.176 -7.061 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 H 0.118 0.882 4 O -0.281 6.281 5 C -0.029 4.029 6 C -0.182 4.182 7 C -0.044 4.044 8 H 0.115 0.885 9 C -0.108 4.108 10 N -0.107 5.107 11 N -0.164 5.164 12 C 0.022 3.978 13 N -0.178 5.178 14 C -0.068 4.068 15 C -0.156 4.156 16 C -0.165 4.165 17 C 0.001 3.999 18 H 0.055 0.945 19 C -0.552 4.552 20 H 0.095 0.905 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.717 3.283 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.189 1.189 27 C -0.033 4.033 28 N -0.185 5.185 29 C -0.068 4.068 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.186 -17.233 -7.943 26.283 hybrid contribution -1.122 -0.724 2.105 2.493 sum -19.308 -17.957 -5.837 27.006 Atomic orbital electron populations 1.22310 0.95148 1.02508 1.02856 1.22744 0.93516 0.97504 0.83519 0.88176 1.88965 1.86014 1.20559 1.32543 1.23538 0.99651 0.84669 0.95044 1.23236 1.02125 0.96555 0.96293 1.20888 0.95025 0.93211 0.95260 0.88497 1.24133 0.99240 1.04323 0.83057 1.73961 1.05546 1.08564 1.22598 1.74796 1.22766 1.21084 0.97711 1.23016 0.86361 0.92818 0.95619 1.58856 1.39524 1.21817 0.97584 1.22283 1.00722 0.93009 0.90782 1.21681 1.00634 0.99142 0.94183 1.22109 0.95232 0.98531 1.00607 1.19235 0.98578 0.93115 0.88960 0.94472 1.20919 1.03977 1.25808 1.04545 0.90494 1.24966 0.94812 0.94907 0.98280 1.69889 1.22326 1.29485 1.31911 0.86857 0.82013 0.76170 0.83298 1.20647 1.22484 1.18898 1.22202 0.84296 0.95376 1.01381 1.46015 1.20432 1.40024 1.12041 1.22097 0.87777 1.02666 0.94302 0.91640 0.91302 0.92141 0.92179 0.88557 0.88862 0.89901 0.91371 0.93613 0.91782 0.91390 0.92005 0.92948 0.92582 0.93298 0.89705 0.90456 0.89495 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 9.30 37.16 0.35 -0.89 16 2 C 0.09 0.87 3.75 -26.16 -0.10 0.77 16 3 H 0.10 1.25 7.69 -51.93 -0.40 0.85 16 4 O -0.36 -4.10 11.19 -35.23 -0.39 -4.49 16 5 C 0.05 0.38 7.66 38.21 0.29 0.67 16 6 C -0.14 -1.22 6.70 -24.72 -0.17 -1.39 16 7 C -0.02 -0.21 3.07 -90.24 -0.28 -0.49 16 8 H 0.10 0.63 6.61 -51.93 -0.34 0.29 16 9 C 0.16 2.17 6.38 -154.02 -0.98 1.18 16 10 N -0.27 -4.76 11.93 32.99 0.39 -4.36 16 11 N -0.32 -6.31 11.24 30.32 0.34 -5.97 16 12 C 0.38 6.50 7.22 -318.86 -2.30 4.20 16 13 N -0.45 -7.95 4.70 -174.55 -0.82 -8.77 16 14 C 0.06 0.86 5.27 -3.83 -0.02 0.84 16 15 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 16 C -0.13 -2.58 4.74 -26.61 -0.13 -2.71 16 17 C 0.02 0.47 1.85 -91.69 -0.17 0.30 16 18 H 0.04 0.89 7.20 -51.93 -0.37 0.51 16 19 C -0.51 -14.26 9.14 -34.44 -0.31 -14.58 16 20 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 21 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 22 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 23 Si 0.89 21.42 24.36 -169.99 -4.14 17.28 16 24 H -0.28 -6.52 6.89 56.52 0.39 -6.13 16 25 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 27 C 0.09 1.94 4.10 -3.83 -0.02 1.93 16 28 N -0.49 -6.42 3.21 -121.45 -0.39 -6.81 16 29 C 0.07 0.60 9.15 59.85 0.55 1.14 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.03 7.67 -51.92 -0.40 0.63 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.77 5.20 -51.93 -0.27 0.50 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 1.13 3.37 -51.93 -0.17 0.95 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.91 7.92 -51.93 -0.41 1.50 16 46 H 0.08 0.48 7.76 -51.93 -0.40 0.08 16 47 H 0.09 0.46 7.30 -51.93 -0.38 0.08 16 48 H 0.10 0.80 7.62 -51.93 -0.40 0.40 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -33.89 365.12 -10.07 -43.96 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.79 Total: -0.73 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.54 Total: -9.05 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.30 Total: -52.48 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.39 Total: -4.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.89 -10.07 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597275055.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.621 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds