Wall clock time and date at job start Sat Apr 11 2020 00:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.86781 * 2 1 4 4 O 1.43743 * 109.87912 * 238.83736 * 2 1 3 5 5 C 1.44374 * 106.97420 * 267.09354 * 4 2 1 6 6 C 1.54994 * 103.49035 * 319.93571 * 5 4 2 7 7 C 1.54098 * 109.87739 * 121.00352 * 2 1 3 8 8 H 1.08997 * 110.48696 * 358.58959 * 7 2 1 9 9 C 1.50694 * 110.48997 * 236.06860 * 7 2 1 10 10 N 1.30295 * 126.34919 * 300.04701 * 9 7 2 11 11 N 1.28522 * 110.05474 * 179.97438 * 10 9 7 12 12 C 1.31217 * 109.86094 * 359.74548 * 11 10 9 13 13 N 1.38590 * 126.47587 * 180.25959 * 12 11 10 14 14 C 1.46846 * 110.99696 * 235.95756 * 13 12 11 15 15 C 1.53038 * 109.51885 * 185.83404 * 14 13 12 16 16 C 1.53113 * 109.28320 * 300.82339 * 15 14 13 17 17 C 1.53123 * 109.15797 * 57.65699 * 16 15 14 18 18 H 1.08997 * 109.50281 * 62.28336 * 17 16 15 19 19 C 1.50703 * 109.53485 * 182.38578 * 17 16 15 20 20 H 1.08001 * 120.00107 * 119.81674 * 19 17 16 21 21 C 1.37875 * 119.99966 * 299.82079 * 19 17 16 22 22 N 1.31510 * 120.00349 * 180.02562 * 21 19 17 23 23 Si 1.86801 * 119.99886 * 0.02562 * 21 19 17 24 24 H 1.48501 * 109.47456 * 89.99736 * 23 21 19 25 25 H 1.48503 * 109.47006 * 210.00231 * 23 21 19 26 26 H 1.48499 * 109.47315 * 329.99761 * 23 21 19 27 27 C 1.46845 * 110.99774 * 0.16779 * 13 12 11 28 28 N 1.36454 * 107.05437 * 0.39831 * 12 11 10 29 29 C 1.46499 * 127.13901 * 179.87160 * 28 12 11 30 30 H 1.09008 * 109.47426 * 298.99521 * 1 2 3 31 31 H 1.09006 * 109.47694 * 58.99144 * 1 2 3 32 32 H 1.08996 * 109.47309 * 178.99370 * 1 2 3 33 33 H 1.08997 * 110.62641 * 78.44313 * 5 4 2 34 34 H 1.09001 * 110.61400 * 201.43683 * 5 4 2 35 35 H 1.09008 * 110.90854 * 278.83075 * 6 5 4 36 36 H 1.09003 * 110.90889 * 155.22498 * 6 5 4 37 37 H 1.08998 * 109.46625 * 305.85548 * 14 13 12 38 38 H 1.09005 * 109.45970 * 65.82400 * 14 13 12 39 39 H 1.09000 * 109.49958 * 180.87722 * 15 14 13 40 40 H 1.09002 * 109.53204 * 60.79232 * 15 14 13 41 41 H 1.09000 * 109.52472 * 297.75119 * 16 15 14 42 42 H 1.08999 * 109.57507 * 177.58890 * 16 15 14 43 43 H 0.96998 * 120.00649 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.46246 * 294.17865 * 27 13 12 45 45 H 1.09007 * 109.45880 * 54.16112 * 27 13 12 46 46 H 1.09002 * 109.47391 * 269.68812 * 29 28 12 47 47 H 1.09001 * 109.46813 * 149.68869 * 29 28 12 48 48 H 1.09004 * 109.47041 * 29.68996 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2279 -2.0724 -0.7619 6 6 2.8324 -1.9515 0.6602 7 6 2.0539 -0.7465 1.2421 8 1 1.2237 -1.0885 1.8601 9 6 2.9743 0.1399 2.0410 10 7 4.0840 0.6787 1.6215 11 7 4.6179 1.3757 2.5601 12 6 3.8686 1.3229 3.6360 13 7 4.1177 1.9525 4.8452 14 6 4.1411 0.9833 5.9481 15 6 4.2727 1.7266 7.2793 16 6 5.5626 2.5515 7.2725 17 6 5.5339 3.5192 6.0861 18 1 4.6986 4.2101 6.2001 19 6 6.8252 4.2947 6.0370 20 1 7.4628 4.2273 5.1679 21 6 7.1926 5.0900 7.1016 22 7 8.3192 5.7671 7.0586 23 14 6.0902 5.2058 8.6051 24 1 6.4712 4.1530 9.5807 25 1 6.2476 6.5425 9.2326 26 1 4.6752 5.0141 8.1974 27 6 5.3659 2.7239 4.7895 28 7 2.7993 0.5283 3.3403 29 6 1.6908 0.1706 4.2288 30 1 -0.3634 0.4982 0.8989 31 1 -0.3635 0.5294 -0.8808 32 1 -0.3634 -1.0275 -0.0180 33 1 1.2813 -2.6118 -0.7321 34 1 2.9294 -2.5631 -1.4366 35 1 3.9003 -1.7382 0.6122 36 1 2.6431 -2.8541 1.2413 37 1 3.2165 0.4061 5.9442 38 1 4.9896 0.3105 5.8223 39 1 4.3058 1.0061 8.0966 40 1 3.4176 2.3892 7.4128 41 1 6.4204 1.8856 7.1788 42 1 5.6397 3.1164 8.2015 43 1 8.5779 6.3264 7.8077 44 1 6.2085 2.0431 4.6692 45 1 5.3306 3.4112 3.9441 46 1 1.9369 -0.7451 4.7664 47 1 0.7881 0.0138 3.6383 48 1 1.5225 0.9770 4.9426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597275055.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:39 Heat of formation + Delta-G solvation = 22.852680 kcal Electronic energy + Delta-G solvation = -28107.430548 eV Core-core repulsion = 24391.057156 eV Total energy + Delta-G solvation = -3716.373392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.12049 -40.66852 -40.08140 -36.29255 -35.72550 -34.35158 -33.56568 -32.21837 -32.17400 -30.18032 -28.58709 -27.28183 -27.05613 -25.64923 -23.80077 -23.00001 -22.64026 -22.16830 -21.16860 -20.50545 -19.06747 -18.33525 -17.75562 -17.46771 -17.16971 -16.89339 -16.35203 -16.13879 -15.71686 -15.57423 -15.17366 -14.92835 -14.87246 -14.34360 -14.28588 -14.21037 -13.97304 -13.79249 -13.54157 -13.07355 -12.96613 -12.86405 -12.82786 -12.56778 -12.43053 -12.30179 -12.14966 -12.05215 -11.92503 -11.82449 -11.68608 -11.34821 -11.24839 -11.07945 -10.94611 -10.84162 -10.65856 -10.56281 -9.27958 -8.30594 -6.37008 0.68865 1.17960 1.30724 1.38454 1.49647 1.74265 2.33240 2.61882 2.89011 3.04133 3.19140 3.53293 3.56879 3.70256 3.80289 3.92415 3.95427 3.99917 4.15235 4.20020 4.27032 4.29439 4.32321 4.37215 4.38245 4.44891 4.55996 4.63245 4.66624 4.68627 4.75597 4.85305 4.86199 4.87281 4.90328 4.95908 5.05770 5.08633 5.11847 5.17289 5.28803 5.35551 5.49539 5.59422 5.63247 5.79414 5.96760 6.17850 6.27811 6.69573 7.28183 7.73839 8.86807 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.002965 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.298928 B = 9442.723267 C = 9851.167446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 H 0.062 0.938 4 O -0.395 6.395 5 C 0.046 3.954 6 C -0.141 4.141 7 C -0.020 4.020 8 H 0.143 0.857 9 C 0.185 3.815 10 N -0.321 5.321 11 N -0.374 5.374 12 C 0.362 3.638 13 N -0.449 5.449 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.025 3.975 18 H 0.034 0.966 19 C -0.526 4.526 20 H 0.024 0.976 21 C 0.011 3.989 22 N -0.952 5.952 23 Si 0.957 3.043 24 H -0.259 1.259 25 H -0.301 1.301 26 H -0.239 1.239 27 C 0.112 3.888 28 N -0.477 5.477 29 C 0.057 3.943 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.036 0.964 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.267 0.733 44 H 0.025 0.975 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.123 0.877 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.243 -21.626 -4.868 32.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.080 0.920 4 O -0.314 6.314 5 C -0.030 4.030 6 C -0.179 4.179 7 C -0.041 4.041 8 H 0.161 0.839 9 C -0.084 4.084 10 N -0.159 5.159 11 N -0.219 5.219 12 C 0.004 3.996 13 N -0.173 5.173 14 C -0.070 4.070 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.006 3.994 18 H 0.053 0.947 19 C -0.565 4.565 20 H 0.043 0.957 21 C -0.186 4.186 22 N -0.592 5.592 23 Si 0.783 3.217 24 H -0.184 1.184 25 H -0.229 1.229 26 H -0.162 1.162 27 C -0.015 4.015 28 N -0.173 5.173 29 C -0.084 4.084 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.124 0.876 47 H 0.141 0.859 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.341 -20.727 -5.759 31.742 hybrid contribution 0.516 0.299 1.221 1.359 sum -22.825 -20.428 -4.538 30.966 Atomic orbital electron populations 1.22254 0.92314 1.04105 1.03314 1.22721 0.95522 0.95673 0.83598 0.92024 1.88933 1.86503 1.22512 1.33484 1.23762 1.01338 0.83352 0.94555 1.23232 0.99970 0.97421 0.97326 1.21227 0.95422 0.92436 0.94992 0.83928 1.24944 0.97946 1.02318 0.83188 1.73860 1.08213 1.10565 1.23254 1.74655 1.25269 1.22766 0.99210 1.22885 0.87786 0.94079 0.94862 1.58807 1.36796 1.22907 0.98761 1.22493 1.02766 0.92477 0.89225 1.21663 0.97699 0.99527 0.95798 1.21983 0.98114 0.98216 0.98200 1.19087 0.95374 0.93553 0.91395 0.94744 1.21223 1.05485 1.26877 1.02893 0.95742 1.25953 0.96383 0.94198 1.02083 1.70066 1.24850 1.30890 1.33368 0.85716 0.80879 0.76377 0.78735 1.18438 1.22887 1.16218 1.21658 0.85766 0.94762 0.99284 1.46237 1.20313 1.38366 1.12335 1.22659 0.87231 1.03951 0.94509 0.90128 0.92055 0.89809 0.88922 0.88230 0.92329 0.86503 0.86714 0.94514 0.87807 0.90178 0.93089 0.93519 0.92424 0.95639 0.92876 0.87568 0.85870 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.30 71.98 0.67 -1.11 16 2 C 0.08 1.56 3.75 30.97 0.12 1.68 16 3 H 0.06 1.59 7.69 -2.39 -0.02 1.57 16 4 O -0.39 -8.58 11.19 -148.98 -1.67 -10.25 16 5 C 0.05 0.61 7.66 72.66 0.56 1.16 16 6 C -0.14 -2.03 6.70 31.90 0.21 -1.82 16 7 C -0.02 -0.31 3.07 -10.55 -0.03 -0.34 16 8 H 0.14 0.94 6.61 -2.39 -0.02 0.93 16 9 C 0.19 4.79 6.38 137.64 0.88 5.67 16 10 N -0.32 -11.92 11.93 -49.54 -0.59 -12.51 16 11 N -0.37 -15.70 11.24 -58.00 -0.65 -16.36 16 12 C 0.36 12.42 7.22 260.11 1.88 14.30 16 13 N -0.45 -15.45 4.70 -706.14 -3.32 -18.77 16 14 C 0.06 1.47 5.27 86.33 0.46 1.92 16 15 C -0.11 -2.93 6.09 30.64 0.19 -2.74 16 16 C -0.13 -4.98 4.74 30.67 0.15 -4.83 16 17 C 0.03 1.19 1.85 -11.49 -0.02 1.17 16 18 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 19 C -0.53 -31.06 9.14 25.60 0.23 -30.83 16 20 H 0.02 1.63 7.99 -2.91 -0.02 1.61 16 21 C 0.01 0.63 5.45 84.65 0.46 1.09 16 22 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 23 Si 0.96 44.18 24.36 68.60 1.67 45.85 16 24 H -0.26 -11.05 6.89 99.48 0.69 -10.36 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.24 -9.97 6.53 99.48 0.65 -9.32 16 27 C 0.11 4.99 4.10 86.33 0.35 5.34 16 28 N -0.48 -11.32 3.21 -538.17 -1.73 -13.05 16 29 C 0.06 0.59 9.15 127.77 1.17 1.76 16 30 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 0.55 8.11 -2.39 -0.02 0.53 16 33 H 0.09 0.66 8.11 -2.39 -0.02 0.64 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.28 7.67 -2.38 -0.02 1.26 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 1.96 5.20 -2.39 -0.01 1.95 16 38 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.87 3.37 -2.39 -0.01 1.87 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.05 2.63 7.92 -2.38 -0.02 2.61 16 46 H 0.11 0.58 7.76 -2.39 -0.02 0.56 16 47 H 0.12 0.44 7.30 -2.39 -0.02 0.42 16 48 H 0.10 1.08 7.62 -2.38 -0.02 1.06 16 Total: -1.00 -84.87 365.12 2.15 -82.72 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.87 Total: 10.53 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 7.26 Total: -7.59 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -5.99 Total: -121.26 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.67 Total: -10.25 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -84.87 2.15 -82.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597275055.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.576 kcal (2) G-P(sol) polarization free energy of solvation -84.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds