Wall clock time and date at job start Sat Apr 11 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.82504 * 2 1 4 4 O 1.43245 * 109.90211 * 239.06206 * 2 1 3 5 5 C 1.43644 * 109.97314 * 238.73334 * 4 2 1 6 6 C 1.54948 * 105.13613 * 24.43021 * 5 4 2 7 7 C 1.54388 * 109.83060 * 120.88927 * 2 1 3 8 8 H 1.09003 * 110.84386 * 216.63469 * 7 2 1 9 9 C 1.50696 * 110.84800 * 340.05405 * 7 2 1 10 10 N 1.30294 * 126.34805 * 60.04165 * 9 7 2 11 11 N 1.28533 * 110.05304 * 179.97438 * 10 9 7 12 12 C 1.31218 * 109.85801 * 0.02562 * 11 10 9 13 13 N 1.38588 * 126.47128 * 179.97438 * 12 11 10 14 14 C 1.46840 * 111.00069 * 124.22789 * 13 12 11 15 15 C 1.53043 * 109.52035 * 174.15747 * 14 13 12 16 16 C 1.53116 * 109.27511 * 59.18633 * 15 14 13 17 17 C 1.53122 * 109.15731 * 302.33988 * 16 15 14 18 18 H 1.08995 * 109.50579 * 297.71568 * 17 16 15 19 19 C 1.50704 * 109.53256 * 177.61936 * 17 16 15 20 20 H 1.08006 * 119.99567 * 245.60761 * 19 17 16 21 21 C 1.37873 * 120.00077 * 65.61147 * 19 17 16 22 22 N 1.31512 * 120.00239 * 9.55662 * 21 19 17 23 23 Si 1.86801 * 119.99901 * 189.55797 * 21 19 17 24 24 H 1.48501 * 109.47236 * 94.98643 * 23 21 19 25 25 H 1.48499 * 109.47393 * 214.98920 * 23 21 19 26 26 H 1.48500 * 109.47211 * 334.98818 * 23 21 19 27 27 C 1.46854 * 110.99561 * 0.02562 * 13 12 11 28 28 N 1.36453 * 107.05837 * 359.97438 * 12 11 10 29 29 C 1.46501 * 127.13931 * 179.97438 * 28 12 11 30 30 H 1.09007 * 109.46658 * 299.11275 * 1 2 3 31 31 H 1.08992 * 109.47577 * 59.11021 * 1 2 3 32 32 H 1.09001 * 109.47459 * 179.12000 * 1 2 3 33 33 H 1.08997 * 110.30802 * 143.34499 * 5 4 2 34 34 H 1.09002 * 110.30700 * 265.41367 * 5 4 2 35 35 H 1.09000 * 111.12463 * 205.63557 * 6 5 4 36 36 H 1.08992 * 111.12466 * 81.47171 * 6 5 4 37 37 H 1.08997 * 109.46745 * 294.17774 * 14 13 12 38 38 H 1.09003 * 109.46042 * 54.15080 * 14 13 12 39 39 H 1.08995 * 109.50695 * 299.23912 * 15 14 13 40 40 H 1.09004 * 109.50067 * 179.11981 * 15 14 13 41 41 H 1.09007 * 109.52123 * 182.44213 * 16 15 14 42 42 H 1.08991 * 109.57803 * 62.27852 * 16 15 14 43 43 H 0.97000 * 120.00162 * 180.02562 * 22 21 19 44 44 H 1.08993 * 109.46329 * 305.86100 * 27 13 12 45 45 H 1.09000 * 109.46163 * 65.82877 * 27 13 12 46 46 H 1.08998 * 109.46933 * 90.02165 * 29 28 12 47 47 H 1.08993 * 109.46965 * 210.02465 * 29 28 12 48 48 H 1.09001 * 109.46956 * 330.02884 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 8 2.0176 -0.6925 -1.1553 5 6 2.8435 -1.7968 -0.7531 6 6 2.3702 -2.1559 0.6780 7 6 2.0537 -0.7456 1.2463 8 1 2.9543 -0.2689 1.6335 9 6 0.9904 -0.8229 2.3113 10 7 -0.1774 -1.3894 2.1969 11 7 -0.8337 -1.2720 3.2958 12 6 -0.1140 -0.6185 4.1772 13 7 -0.4882 -0.3001 5.4731 14 6 0.4883 -0.8111 6.4434 15 6 0.1221 -0.3183 7.8453 16 6 -1.2840 -0.8083 8.2020 17 6 -2.2744 -0.3027 7.1493 18 1 -2.2904 0.7871 7.1584 19 6 -3.6521 -0.8287 7.4600 20 1 -4.1301 -1.5226 6.7843 21 6 -4.3021 -0.4241 8.6065 22 7 -3.8090 0.5566 9.3308 23 14 -5.8834 -1.2689 9.1312 24 1 -5.5707 -2.3402 10.1109 25 1 -6.7914 -0.2749 9.7577 26 1 -6.5452 -1.8633 7.9421 27 6 -1.8387 -0.7960 5.7677 28 7 1.0723 -0.3117 3.5769 29 6 2.1995 0.4155 4.1659 30 1 -0.3633 0.5000 0.8979 31 1 -0.3634 0.5275 -0.8818 32 1 -0.3634 -1.0275 -0.0158 33 1 2.6962 -2.6432 -1.4238 34 1 3.8925 -1.5008 -0.7433 35 1 3.1660 -2.6385 1.2453 36 1 1.4760 -2.7784 0.6514 37 1 0.4799 -1.9009 6.4277 38 1 1.4834 -0.4518 6.1807 39 1 0.1439 0.7712 7.8653 40 1 0.8383 -0.7106 8.5674 41 1 -1.5661 -0.4234 9.1821 42 1 -1.2971 -1.8980 8.2209 43 1 -4.2661 0.8410 10.1377 44 1 -2.5339 -0.4261 5.0142 45 1 -1.8361 -1.8860 5.7552 46 1 2.8773 -0.2911 4.6448 47 1 2.7318 0.9561 3.3833 48 1 1.8281 1.1224 4.9078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597275056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:42 Heat of formation + Delta-G solvation = 27.303280 kcal Electronic energy + Delta-G solvation = -28213.888804 eV Core-core repulsion = 24497.708405 eV Total energy + Delta-G solvation = -3716.180399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.12178 -40.65024 -39.91681 -36.22613 -35.67683 -34.43166 -33.40372 -32.27822 -31.84691 -29.67538 -28.55131 -27.37078 -26.98582 -25.39551 -23.94565 -23.13315 -22.78180 -22.17516 -20.90669 -20.37429 -18.80437 -17.96715 -17.69906 -17.44700 -17.00851 -16.74811 -16.50462 -16.14663 -15.72749 -15.57692 -14.93430 -14.71929 -14.51657 -14.48441 -14.27550 -14.00623 -13.83464 -13.68919 -13.44478 -13.26044 -13.10459 -12.85883 -12.77775 -12.64369 -12.51253 -12.20840 -12.00190 -11.90623 -11.87904 -11.84346 -11.64109 -11.28437 -11.18647 -11.03936 -10.82953 -10.67173 -10.50523 -10.42520 -9.18239 -8.16301 -6.24104 0.72572 1.22518 1.39567 1.41454 1.51860 1.78274 2.41066 2.67533 2.80447 3.14518 3.24793 3.50304 3.59453 3.74274 3.87865 3.90652 4.03105 4.06053 4.14360 4.27870 4.31505 4.34291 4.38717 4.39739 4.48208 4.54555 4.63035 4.66909 4.73555 4.75852 4.85026 4.88432 4.92045 4.95243 4.97506 5.02864 5.04914 5.19538 5.26790 5.33606 5.39233 5.61150 5.63704 5.70452 5.95907 5.98300 6.05723 6.25140 6.34188 6.85027 7.42279 7.77726 8.92604 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.002966 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.536330 B = 9436.789172 C =10078.876976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.095 3.905 3 H 0.101 0.899 4 O -0.394 6.394 5 C 0.051 3.949 6 C -0.139 4.139 7 C -0.025 4.025 8 H 0.140 0.860 9 C 0.186 3.814 10 N -0.305 5.305 11 N -0.372 5.372 12 C 0.361 3.639 13 N -0.453 5.453 14 C 0.062 3.938 15 C -0.106 4.106 16 C -0.103 4.103 17 C 0.056 3.944 18 H 0.009 0.991 19 C -0.540 4.540 20 H 0.046 0.954 21 C 0.024 3.976 22 N -0.911 5.911 23 Si 0.948 3.052 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.273 1.273 27 C 0.107 3.893 28 N -0.479 5.479 29 C 0.059 3.941 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.263 0.737 44 H 0.050 0.950 45 H 0.026 0.974 46 H 0.105 0.895 47 H 0.122 0.878 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.321 -0.910 -13.221 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.119 0.881 4 O -0.314 6.314 5 C -0.025 4.025 6 C -0.178 4.178 7 C -0.045 4.045 8 H 0.158 0.842 9 C -0.083 4.083 10 N -0.143 5.143 11 N -0.217 5.217 12 C 0.004 3.996 13 N -0.177 5.177 14 C -0.064 4.064 15 C -0.144 4.144 16 C -0.142 4.142 17 C 0.037 3.963 18 H 0.028 0.972 19 C -0.579 4.579 20 H 0.064 0.936 21 C -0.176 4.176 22 N -0.550 5.550 23 Si 0.774 3.226 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.198 1.198 27 C -0.020 4.020 28 N -0.174 5.174 29 C -0.082 4.082 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.123 0.877 47 H 0.141 0.859 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.080 -0.970 -13.766 25.196 hybrid contribution -0.736 -0.376 1.352 1.584 sum 20.345 -1.347 -12.415 23.871 Atomic orbital electron populations 1.22131 0.95772 1.02618 1.00327 1.22588 0.93868 0.96420 0.83459 0.88112 1.88444 1.68021 1.44888 1.30019 1.23571 0.95368 0.89223 0.94313 1.23318 1.02961 0.94784 0.96726 1.21348 0.93943 0.99274 0.89973 0.84218 1.24594 0.97490 1.00191 0.85986 1.73954 1.03469 1.20496 1.16425 1.74652 1.27408 1.20479 0.99149 1.22904 0.85283 0.97056 0.94366 1.58773 1.05665 1.56712 0.96516 1.22416 0.94761 0.97575 0.91645 1.21599 0.97120 1.01316 0.94329 1.21480 0.94133 0.98091 1.00472 1.18622 0.93402 0.95402 0.88900 0.97240 1.21381 1.02222 1.27163 1.07103 0.93590 1.25591 1.00390 0.94923 0.96697 1.70062 1.41598 1.26899 1.16431 0.85695 0.79821 0.78636 0.78455 1.19791 1.20694 1.19814 1.21872 0.84757 0.96351 0.98980 1.46210 1.14812 1.44986 1.11400 1.22595 0.86242 0.97739 1.01597 0.94182 0.92401 0.92204 0.88778 0.89090 0.87069 0.91606 0.94606 0.87362 0.91672 0.88989 0.93144 0.94837 0.92807 0.93094 0.95562 0.87708 0.85934 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.08 71.98 0.58 -3.30 16 2 C 0.10 1.78 4.10 31.07 0.13 1.90 16 3 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 4 O -0.39 -7.69 11.02 -148.98 -1.64 -9.33 16 5 C 0.05 0.64 7.78 72.65 0.56 1.20 16 6 C -0.14 -2.00 6.60 32.05 0.21 -1.79 16 7 C -0.02 -0.39 3.31 -10.28 -0.03 -0.42 16 8 H 0.14 1.08 7.10 -2.39 -0.02 1.07 16 9 C 0.19 4.73 5.55 137.64 0.76 5.50 16 10 N -0.31 -10.68 9.08 -49.54 -0.45 -11.13 16 11 N -0.37 -15.20 11.24 -58.00 -0.65 -15.85 16 12 C 0.36 12.72 7.22 260.11 1.88 14.60 16 13 N -0.45 -16.75 4.70 -706.14 -3.32 -20.07 16 14 C 0.06 1.84 5.28 86.33 0.46 2.30 16 15 C -0.11 -3.45 6.09 30.65 0.19 -3.27 16 16 C -0.10 -4.60 5.09 30.67 0.16 -4.45 16 17 C 0.06 2.83 2.12 -11.49 -0.02 2.81 16 18 H 0.01 0.54 8.09 -2.39 -0.02 0.52 16 19 C -0.54 -30.57 8.48 25.60 0.22 -30.35 16 20 H 0.05 2.64 7.77 -2.91 -0.02 2.62 16 21 C 0.02 1.33 5.22 84.65 0.44 1.77 16 22 N -0.91 -52.44 12.19 21.45 0.26 -52.18 16 23 Si 0.95 44.26 29.55 68.60 2.03 46.29 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.11 4.90 4.11 86.32 0.35 5.26 16 28 N -0.48 -11.89 3.21 -538.18 -1.73 -13.62 16 29 C 0.06 0.75 9.15 127.77 1.17 1.92 16 30 H 0.04 1.19 6.67 -2.38 -0.02 1.18 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.80 7.05 -2.39 -0.02 1.78 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.36 7.85 -2.39 -0.02 1.34 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 2.27 5.20 -2.39 -0.01 2.26 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.05 2.51 6.99 -2.38 -0.02 2.49 16 42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.05 2.55 7.92 -2.39 -0.02 2.53 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.10 0.83 7.75 -2.39 -0.02 0.81 16 47 H 0.12 0.73 7.32 -2.39 -0.02 0.71 16 48 H 0.09 1.35 7.64 -2.39 -0.02 1.34 16 Total: -1.00 -74.33 367.55 2.49 -71.84 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.94 Total: 10.37 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 7.05 Total: -6.32 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -5.89 Total: -112.84 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.64 Total: -9.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.33 2.49 -71.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597275056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.141 kcal (2) G-P(sol) polarization free energy of solvation -74.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds