Wall clock time and date at job start Sat Apr 11 2020 00:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 110.99969 * 2 1 4 4 C 1.46894 * 111.00145 * 123.95420 * 2 1 3 5 5 H 1.09003 * 109.47110 * 191.30274 * 4 2 1 6 6 C 1.50703 * 109.47396 * 71.30526 * 4 2 1 7 7 O 1.21280 * 119.99398 * 351.34141 * 6 4 2 8 8 N 1.34775 * 120.00416 * 171.35059 * 6 4 2 9 9 C 1.46927 * 120.62774 * 354.96911 * 8 6 4 10 10 C 1.53192 * 108.77484 * 233.58759 * 9 8 6 11 11 C 1.53033 * 109.31571 * 305.37012 * 10 9 8 12 12 C 1.53044 * 109.54150 * 61.36182 * 11 10 9 13 13 H 1.08993 * 109.49415 * 58.62035 * 12 11 10 14 14 C 1.50695 * 109.49944 * 178.68923 * 12 11 10 15 15 H 1.07992 * 120.00624 * 119.99932 * 14 12 11 16 16 C 1.37883 * 119.99870 * 299.99977 * 14 12 11 17 17 N 1.31512 * 120.00374 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 119.99887 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47166 * 89.99812 * 18 16 14 20 20 H 1.48500 * 109.47001 * 210.00286 * 18 16 14 21 21 H 1.48500 * 109.47047 * 330.00069 * 18 16 14 22 22 C 1.46926 * 120.63164 * 174.94968 * 8 6 4 23 23 C 1.50703 * 109.47377 * 311.30057 * 4 2 1 24 24 C 1.34667 * 126.58733 * 283.74535 * 23 4 2 25 25 N 1.34129 * 108.01812 * 179.97438 * 24 23 4 26 26 C 1.30503 * 109.25802 * 0.02562 * 25 24 23 27 27 N 1.35048 * 108.69384 * 359.76590 * 26 25 24 28 28 C 1.46505 * 126.39406 * 180.27352 * 27 26 25 29 29 H 1.09004 * 109.47120 * 301.65973 * 1 2 3 30 30 H 1.08998 * 109.47700 * 61.66569 * 1 2 3 31 31 H 1.09007 * 109.47042 * 181.66200 * 1 2 3 32 32 H 1.08995 * 109.46825 * 183.95662 * 3 2 1 33 33 H 1.09008 * 109.46837 * 303.95374 * 3 2 1 34 34 H 1.08997 * 109.47153 * 63.95318 * 3 2 1 35 35 H 1.08999 * 109.58499 * 113.80568 * 9 8 6 36 36 H 1.09001 * 109.70261 * 353.44937 * 9 8 6 37 37 H 1.08998 * 109.49848 * 185.41235 * 10 9 8 38 38 H 1.09008 * 109.52070 * 65.33396 * 10 9 8 39 39 H 1.09011 * 109.45834 * 301.34153 * 11 10 9 40 40 H 1.08995 * 109.46543 * 181.38633 * 11 10 9 41 41 H 0.96993 * 120.00188 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.58398 * 6.62464 * 22 8 6 43 43 H 1.08994 * 109.58503 * 246.19626 * 22 8 6 44 44 H 1.07997 * 125.99374 * 359.95654 * 24 23 4 45 45 H 1.07997 * 125.65506 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.46889 * 263.66004 * 28 27 26 47 47 H 1.08995 * 109.47722 * 23.65810 * 28 27 26 48 48 H 1.08993 * 109.46989 * 143.66327 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 1 3.0664 -0.5866 1.2318 6 6 1.7503 -2.2354 0.9103 7 8 1.0574 -2.5983 -0.0166 8 7 2.3009 -3.1463 1.7371 9 6 3.2300 -2.7305 2.7966 10 6 4.5248 -3.5380 2.6619 11 6 4.1927 -5.0318 2.6677 12 6 3.2920 -5.3606 1.4748 13 1 3.7984 -5.0850 0.5499 14 6 2.9919 -6.8374 1.4632 15 1 1.9706 -7.1814 1.5324 16 6 4.0213 -7.7493 1.3641 17 7 3.7594 -9.0381 1.3534 18 14 5.7880 -7.1543 1.2452 19 1 6.3612 -7.0295 2.6094 20 1 6.5868 -8.1291 0.4598 21 1 5.8204 -5.8311 0.5718 22 6 1.9832 -4.5739 1.5962 23 6 1.3000 -0.3302 2.4015 24 6 1.5267 0.8032 3.0925 25 7 0.7037 0.8150 4.1516 26 6 -0.0239 -0.2683 4.1434 27 7 0.3133 -1.0081 3.0651 28 6 -0.2674 -2.2965 2.6788 29 1 -0.3633 0.5394 0.8748 30 1 -0.3634 0.4877 -0.9045 31 1 -0.3633 -1.0273 0.0298 32 1 3.0827 1.3432 -0.0709 33 1 1.5897 1.9164 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 2.7809 -2.9202 3.7715 36 1 3.4499 -1.6676 2.6963 37 1 5.1852 -3.3088 3.4982 38 1 5.0198 -3.2790 1.7258 39 1 3.6761 -5.2854 3.5935 40 1 5.1145 -5.6091 2.5967 41 1 4.4835 -9.6795 1.2834 42 1 1.3802 -4.7274 0.7012 43 1 1.4324 -4.9138 2.4732 44 1 2.2453 1.5683 2.8387 45 1 -0.7746 -0.5280 4.8752 46 1 0.3647 -3.1048 3.0466 47 1 -1.2640 -2.3898 3.1099 48 1 -0.3346 -2.3535 1.5924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902956.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:17 Heat of formation + Delta-G solvation = 39.045876 kcal Electronic energy + Delta-G solvation = -29608.632877 eV Core-core repulsion = 25892.961675 eV Total energy + Delta-G solvation = -3715.671202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47112 -41.27777 -39.02524 -37.66821 -35.47742 -34.91167 -33.61123 -32.43976 -31.54486 -28.72177 -28.49773 -27.94145 -26.96169 -26.27949 -23.56313 -23.21209 -22.50803 -22.10959 -20.82268 -19.87803 -18.85570 -18.39372 -17.99094 -17.32607 -16.98963 -16.58744 -16.30829 -15.96913 -15.60956 -15.46854 -15.38728 -14.92849 -14.88728 -14.81399 -14.56297 -14.27953 -14.09416 -13.84606 -13.62372 -13.55895 -13.14820 -13.08205 -12.93721 -12.91157 -12.65240 -12.55025 -12.40948 -12.09648 -11.94350 -11.52759 -11.29882 -11.16170 -11.04876 -10.69424 -10.68183 -10.54418 -9.61892 -9.51428 -9.32910 -8.32175 -6.36623 0.96350 1.27220 1.35292 1.44428 1.47464 1.78349 1.87844 2.14248 2.30193 2.98439 3.03438 3.33332 3.47242 3.81273 3.85629 3.90054 3.98882 4.07917 4.16056 4.20554 4.26879 4.29238 4.33303 4.44013 4.47372 4.54612 4.60882 4.64089 4.69287 4.69641 4.75858 4.85575 4.93500 5.01568 5.04922 5.07455 5.10214 5.27692 5.34152 5.40950 5.62481 5.65906 5.71912 5.80911 5.99229 6.18605 6.24679 6.42701 6.70036 7.05106 7.12090 7.29395 8.84269 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.004163 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.791753 B = 6724.334283 C = 6898.665736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.529 5.529 3 C 0.018 3.982 4 C 0.148 3.852 5 H 0.138 0.862 6 C 0.519 3.481 7 O -0.560 6.560 8 N -0.604 5.604 9 C 0.116 3.884 10 C -0.132 4.132 11 C -0.120 4.120 12 C 0.008 3.992 13 H 0.012 0.988 14 C -0.518 4.518 15 H 0.037 0.963 16 C 0.016 3.984 17 N -0.947 5.947 18 Si 0.950 3.050 19 H -0.260 1.260 20 H -0.303 1.303 21 H -0.253 1.253 22 C 0.144 3.856 23 C -0.056 4.056 24 C -0.012 4.012 25 N -0.521 5.521 26 C 0.191 3.809 27 N -0.444 5.444 28 C 0.050 3.950 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.266 0.734 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.184 0.816 45 H 0.234 0.766 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 22.606 5.307 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.252 5.252 3 C -0.129 4.129 4 C 0.035 3.965 5 H 0.155 0.845 6 C 0.307 3.693 7 O -0.439 6.439 8 N -0.337 5.337 9 C -0.006 4.006 10 C -0.170 4.170 11 C -0.158 4.158 12 C -0.012 4.012 13 H 0.031 0.969 14 C -0.557 4.557 15 H 0.056 0.944 16 C -0.181 4.181 17 N -0.588 5.588 18 Si 0.777 3.223 19 H -0.185 1.185 20 H -0.232 1.232 21 H -0.177 1.177 22 C 0.021 3.979 23 C -0.173 4.173 24 C -0.162 4.162 25 N -0.239 5.239 26 C -0.091 4.091 27 N -0.126 5.126 28 C -0.092 4.092 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.201 0.799 45 H 0.250 0.750 46 H 0.098 0.902 47 H 0.134 0.866 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.530 22.503 4.898 23.299 hybrid contribution 0.393 -1.207 -0.205 1.285 sum -3.137 21.297 4.694 22.032 Atomic orbital electron populations 1.22354 0.86860 1.01857 1.00479 1.62080 1.09089 1.15512 1.38486 1.22627 1.01609 0.86734 1.01963 1.20137 1.00918 0.90181 0.85234 0.84470 1.20644 0.79275 0.88365 0.81026 1.90669 1.40465 1.81597 1.31146 1.48358 1.45507 1.06923 1.32893 1.21833 0.88945 0.99622 0.90153 1.21974 0.97512 0.94432 1.03121 1.21852 0.98705 0.95605 0.99610 1.19340 0.93858 0.93410 0.94568 0.96949 1.21205 0.93852 0.90659 1.49960 0.94428 1.25810 1.03550 0.94630 0.94153 1.70034 1.34067 1.02331 1.52320 0.85831 0.79718 0.78151 0.78586 1.18549 1.23165 1.17726 1.21327 0.97253 0.78147 1.01128 1.21451 0.98769 0.97704 0.99398 1.22304 1.02738 0.97720 0.93396 1.70346 1.09608 1.21462 1.22507 1.25583 1.02674 0.88680 0.92178 1.45388 1.28388 1.18007 1.20780 1.22578 1.01072 0.82557 1.02972 0.95772 0.90652 0.92242 0.89687 0.90209 0.93890 0.90646 0.88024 0.88325 0.92208 0.91754 0.94656 0.92536 0.91992 0.91381 0.79933 0.75032 0.90155 0.86646 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 8.68 127.69 1.11 1.87 16 2 N -0.53 -12.09 4.68 -932.20 -4.36 -16.45 16 3 C 0.02 0.28 9.35 127.69 1.19 1.47 16 4 C 0.15 3.34 1.76 43.43 0.08 3.42 16 5 H 0.14 2.59 6.82 -2.39 -0.02 2.57 16 6 C 0.52 15.41 4.12 87.66 0.36 15.77 16 7 O -0.56 -20.89 12.76 -3.03 -0.04 -20.93 16 8 N -0.60 -17.79 1.63 -818.90 -1.33 -19.13 16 9 C 0.12 2.72 5.81 86.36 0.50 3.23 16 10 C -0.13 -3.55 6.08 30.67 0.19 -3.36 16 11 C -0.12 -4.46 4.65 30.62 0.14 -4.31 16 12 C 0.01 0.35 1.84 -11.46 -0.02 0.33 16 13 H 0.01 0.59 7.21 -2.39 -0.02 0.58 16 14 C -0.52 -28.57 9.15 25.60 0.23 -28.34 16 15 H 0.04 2.29 7.99 -2.91 -0.02 2.26 16 16 C 0.02 0.91 5.45 84.66 0.46 1.37 16 17 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 18 Si 0.95 44.21 24.38 68.60 1.67 45.88 16 19 H -0.26 -11.22 6.86 99.48 0.68 -10.53 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 22 C 0.14 5.38 5.11 86.36 0.44 5.82 16 23 C -0.06 -1.14 2.93 40.95 0.12 -1.02 16 24 C -0.01 -0.24 10.38 83.52 0.87 0.63 16 25 N -0.52 -11.55 11.25 -200.31 -2.25 -13.81 16 26 C 0.19 3.50 12.56 180.26 2.26 5.76 16 27 N -0.44 -8.78 3.15 -537.89 -1.70 -10.47 16 28 C 0.05 1.02 9.34 127.77 1.19 2.21 16 29 H 0.02 0.55 7.07 -2.38 -0.02 0.53 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.69 4.90 -2.38 -0.01 1.68 16 32 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.04 0.63 5.71 -2.39 -0.01 0.61 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.90 5.31 -2.39 -0.01 1.88 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.04 1.42 3.25 -2.39 -0.01 1.41 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.06 2.63 7.00 -2.39 -0.02 2.61 16 43 H 0.07 2.44 7.60 -2.39 -0.02 2.42 16 44 H 0.18 2.85 7.27 -2.91 -0.02 2.83 16 45 H 0.23 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.08 1.79 5.90 -2.39 -0.01 1.77 16 47 H 0.12 1.63 8.13 -2.39 -0.02 1.61 16 48 H 0.08 1.99 4.27 -2.39 -0.01 1.98 16 Total: -1.00 -71.83 351.25 2.31 -69.52 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.89 Total: 18.65 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 9.13 Total: 4.83 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -9.34 Total: -117.95 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.04 Total: -20.93 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.88 kcal Total: -71.83 2.31 -69.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902956.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.562 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds