Wall clock time and date at job start Sat Apr 11 2020 00:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00274 * 2 1 4 4 C 1.46903 * 110.99621 * 123.95250 * 2 1 3 5 5 C 1.53002 * 109.47167 * 66.04674 * 4 2 1 6 6 C 1.53001 * 109.47199 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47040 * 180.02562 * 6 5 4 8 8 C 1.46509 * 119.99656 * 269.99725 * 7 6 5 9 9 C 1.50696 * 109.46768 * 274.75493 * 8 7 6 10 10 H 1.08000 * 120.00497 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99752 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00149 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99963 * 359.97438 * 11 9 8 14 14 H 1.48508 * 109.46738 * 90.00647 * 13 11 9 15 15 H 1.48497 * 109.47081 * 210.00332 * 13 11 9 16 16 H 1.48492 * 109.47303 * 330.00375 * 13 11 9 17 17 C 1.34770 * 120.00451 * 89.99225 * 7 6 5 18 18 O 1.21601 * 120.00004 * 4.09987 * 17 7 6 19 19 C 1.47429 * 119.99972 * 184.09218 * 17 7 6 20 20 C 1.41296 * 126.41887 * 325.31490 * 19 17 7 21 21 N 1.30444 * 108.02534 * 180.24532 * 20 19 17 22 22 N 1.39937 * 108.89741 * 359.65142 * 21 20 19 23 23 C 1.46495 * 125.75453 * 180.14859 * 22 21 20 24 24 C 1.53000 * 117.50060 * 163.87112 * 23 22 21 25 25 C 1.52997 * 60.00072 * 252.50985 * 24 23 22 26 26 C 1.34266 * 108.49015 * 0.35958 * 22 21 20 27 27 H 1.09002 * 109.47250 * 296.04839 * 1 2 3 28 28 H 1.09005 * 109.47062 * 56.04146 * 1 2 3 29 29 H 1.08997 * 109.47486 * 176.04621 * 1 2 3 30 30 H 1.09000 * 109.46655 * 183.94805 * 3 2 1 31 31 H 1.08990 * 109.46795 * 303.95204 * 3 2 1 32 32 H 1.09001 * 109.46933 * 63.95331 * 3 2 1 33 33 H 1.09004 * 109.47582 * 306.04446 * 4 2 1 34 34 H 1.09003 * 109.47210 * 186.04464 * 4 2 1 35 35 H 1.09004 * 109.47056 * 59.99450 * 5 4 2 36 36 H 1.09003 * 109.46885 * 299.99989 * 5 4 2 37 37 H 1.08991 * 109.47360 * 59.99736 * 6 5 4 38 38 H 1.08998 * 109.46681 * 299.99643 * 6 5 4 39 39 H 1.09005 * 109.46988 * 34.75107 * 8 7 6 40 40 H 1.09000 * 109.47159 * 154.75143 * 8 7 6 41 41 H 0.96998 * 120.00558 * 180.02562 * 12 11 9 42 42 H 1.07999 * 125.98171 * 359.97438 * 20 19 17 43 43 H 1.08998 * 115.54874 * 309.57323 * 23 22 21 44 44 H 1.09001 * 117.49863 * 359.97438 * 24 23 22 45 45 H 1.08995 * 117.50412 * 145.02358 * 24 23 22 46 46 H 1.09004 * 117.49886 * 252.51371 * 25 24 23 47 47 H 1.09002 * 117.52249 * 107.47923 * 25 24 23 48 48 H 1.07999 * 126.28787 * 179.77289 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9704 6 6 2.1790 -3.0403 2.1556 7 7 1.8310 -4.4543 1.9951 8 6 0.5739 -4.9664 2.5466 9 6 0.7735 -5.3343 3.9943 10 1 1.7401 -5.2005 4.4572 11 6 -0.2776 -5.8427 4.7276 12 7 -0.1036 -6.1633 5.9911 13 14 -1.9492 -6.0747 3.9268 14 1 -2.0298 -7.4342 3.3344 15 1 -3.0142 -5.9165 4.9494 16 1 -2.1324 -5.0582 2.8600 17 6 2.6670 -5.2840 1.3402 18 8 3.7435 -4.8770 0.9476 19 6 2.2764 -6.6852 1.0999 20 6 1.5116 -7.5025 1.9622 21 7 1.3846 -8.6733 1.4011 22 7 2.0454 -8.6589 0.1677 23 6 2.1324 -9.7812 -0.7699 24 6 2.5604 -9.4707 -2.2056 25 6 1.1059 -9.8363 -1.9031 26 6 2.5900 -7.4445 -0.0095 27 1 -0.3634 0.4513 0.9233 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0829 1.3431 -0.0708 31 1 1.5899 1.9162 -0.8524 32 1 1.7045 1.8723 0.9233 33 1 1.5611 -0.3872 2.0629 34 1 3.0797 -0.6612 1.1757 35 1 2.0657 -2.6214 0.0452 36 1 0.5471 -2.3475 0.9323 37 1 1.7443 -2.6615 3.0805 38 1 3.2633 -2.9355 2.1941 39 1 -0.1960 -4.1986 2.4697 40 1 0.2643 -5.8489 1.9867 41 1 -0.8430 -6.5213 6.5070 42 1 1.1072 -7.2105 2.9200 43 1 2.4595 -10.7281 -0.3405 44 1 2.7769 -8.4313 -2.4527 45 1 3.1692 -10.2134 -2.7211 46 1 0.7579 -10.8196 -2.2195 47 1 0.3655 -9.0378 -1.9508 48 1 3.1676 -7.1214 -0.8629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599166005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:29 Heat of formation + Delta-G solvation = 85.913189 kcal Electronic energy + Delta-G solvation = -27468.737152 eV Core-core repulsion = 23755.098269 eV Total energy + Delta-G solvation = -3713.638883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01733 -38.86104 -37.58342 -37.06847 -35.22394 -32.97035 -31.80180 -30.66805 -29.71229 -28.06569 -27.61023 -26.09614 -23.92811 -22.83448 -22.62881 -22.43243 -21.05572 -20.58319 -19.93401 -18.66046 -17.16979 -17.02686 -15.98487 -15.80903 -15.69649 -15.35240 -15.01083 -14.80771 -14.37390 -14.24083 -13.92676 -13.81382 -13.54146 -13.12426 -12.82502 -12.59732 -12.42376 -12.35315 -12.14928 -11.87303 -11.78449 -11.62311 -11.50477 -11.27066 -11.19837 -11.04255 -11.01737 -10.86326 -10.64523 -10.34545 -10.28271 -10.14066 -9.64028 -9.11123 -9.04521 -8.74986 -8.36627 -8.14816 -7.67640 -6.26070 -4.28349 1.97824 2.54215 2.87277 3.19276 3.26086 3.28978 3.37029 3.75006 4.01958 4.10313 4.24324 4.32691 4.48017 4.66956 5.00056 5.03798 5.07353 5.12778 5.23537 5.27231 5.34664 5.36871 5.47142 5.53036 5.58738 5.64143 5.68658 5.73103 5.77125 5.80572 5.82385 5.90101 5.98733 6.01925 6.17888 6.30994 6.47137 6.54712 6.61992 6.75331 7.01875 7.04536 7.17275 7.22974 7.37796 7.47098 8.09374 8.15447 8.43501 8.82330 9.02326 9.32482 10.85374 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.008436 B = 0.004591 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.273608 B = 6096.820769 C = 8255.666296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.584 5.584 8 C 0.201 3.799 9 C -0.544 4.544 10 H 0.083 0.917 11 C 0.080 3.920 12 N -0.883 5.883 13 Si 0.861 3.139 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.597 3.403 18 O -0.573 6.573 19 C -0.275 4.275 20 C 0.091 3.909 21 N -0.307 5.307 22 N -0.350 5.350 23 C 0.087 3.913 24 C -0.173 4.173 25 C -0.177 4.177 26 C 0.102 3.898 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.268 0.732 42 H 0.225 0.775 43 H 0.138 0.862 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 2.401 -15.126 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.312 5.312 8 C 0.079 3.921 9 C -0.582 4.582 10 H 0.101 0.899 11 C -0.125 4.125 12 N -0.519 5.519 13 Si 0.687 3.313 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.386 3.614 18 O -0.455 6.455 19 C -0.290 4.290 20 C -0.095 4.095 21 N -0.125 5.125 22 N -0.128 5.128 23 C -0.016 4.016 24 C -0.211 4.211 25 C -0.215 4.215 26 C -0.047 4.047 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.241 0.759 43 H 0.156 0.844 44 H 0.123 0.877 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.470 1.025 -15.527 15.630 hybrid contribution -1.017 1.040 0.513 1.543 sum 0.453 2.064 -15.014 15.162 Atomic orbital electron populations 1.22438 0.87529 1.02647 1.00115 1.61980 1.08013 1.13454 1.43806 1.22364 1.00764 0.89027 1.00181 1.22085 1.00201 0.93816 0.90902 1.21959 1.01368 0.93381 1.00083 1.21208 1.00900 0.80501 0.97423 1.47621 1.21808 1.07995 1.53802 1.20064 0.81776 0.95389 0.94878 1.21425 0.99479 1.43674 0.93639 0.89926 1.24885 0.98385 0.94558 0.94625 1.69883 1.32523 1.41954 1.07542 0.87063 0.84494 0.79893 0.79866 1.19210 1.20753 1.18743 1.17219 0.83162 0.83858 0.77173 1.90670 1.22665 1.77786 1.54345 1.20283 1.12919 0.97090 0.98695 1.25635 0.94082 0.88671 1.01154 1.77301 1.19392 1.22564 0.93286 1.47844 1.40735 1.08823 1.15420 1.21646 1.06242 0.90085 0.83653 1.23422 0.98467 1.04155 0.95037 1.23459 0.92899 1.04309 1.00847 1.22632 0.97209 0.85170 0.99706 0.95631 0.91801 0.90868 0.91395 0.91672 0.95800 0.94561 0.90608 0.91097 0.91925 0.90208 0.90551 0.95152 0.94281 0.92160 0.75911 0.84411 0.87671 0.86746 0.87212 0.87952 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.07 0.56 0.80 16 2 N -0.55 -6.93 5.02 -251.25 -1.26 -8.19 16 3 C 0.03 0.25 9.57 60.06 0.57 0.83 16 4 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 5 C -0.13 -2.01 5.46 -26.73 -0.15 -2.16 16 6 C 0.12 2.24 5.46 -4.04 -0.02 2.21 16 7 N -0.58 -12.16 2.46 -176.33 -0.43 -12.60 16 8 C 0.20 4.45 3.75 -5.19 -0.02 4.43 16 9 C -0.54 -13.92 7.83 -34.44 -0.27 -14.19 16 10 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.08 2.12 5.28 -17.82 -0.09 2.02 16 12 N -0.88 -25.02 13.96 55.43 0.77 -24.24 16 13 Si 0.86 19.67 27.47 -169.99 -4.67 15.00 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 17 C 0.60 12.88 7.60 -12.52 -0.10 12.79 16 18 O -0.57 -13.18 16.61 5.28 0.09 -13.09 16 19 C -0.28 -5.59 5.46 -105.06 -0.57 -6.16 16 20 C 0.09 1.95 9.55 -16.98 -0.16 1.79 16 21 N -0.31 -6.19 12.50 30.86 0.39 -5.81 16 22 N -0.35 -5.74 3.91 -54.32 -0.21 -5.95 16 23 C 0.09 1.01 7.12 -67.93 -0.48 0.52 16 24 C -0.17 -1.41 9.97 -26.73 -0.27 -1.68 16 25 C -0.18 -1.64 10.46 -26.73 -0.28 -1.92 16 26 C 0.10 1.73 10.77 -16.56 -0.18 1.55 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.99 6.55 -51.93 -0.34 0.65 16 37 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 38 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 39 H 0.03 0.66 7.17 -51.93 -0.37 0.29 16 40 H 0.04 0.88 4.36 -51.93 -0.23 0.65 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.23 5.29 4.60 -52.49 -0.24 5.05 16 43 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.10 0.87 6.98 -51.93 -0.36 0.51 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.18 2.41 7.20 -52.49 -0.38 2.03 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -31.41 387.91 -8.67 -40.08 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.71 Total: 7.36 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.47 Total: 1.60 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.75 Total: -56.79 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.41 -8.67 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599166005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.992 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds