Wall clock time and date at job start Sat Apr 11 2020 00:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00274 * 2 1 4 4 C 1.46903 * 110.99621 * 123.95250 * 2 1 3 5 5 C 1.53002 * 109.47167 * 66.04674 * 4 2 1 6 6 C 1.53001 * 109.47199 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47040 * 180.02562 * 6 5 4 8 8 C 1.46509 * 119.99656 * 269.99725 * 7 6 5 9 9 C 1.50696 * 109.46768 * 274.75493 * 8 7 6 10 10 H 1.08000 * 120.00497 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99752 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00149 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99963 * 359.97438 * 11 9 8 14 14 H 1.48508 * 109.46738 * 90.00647 * 13 11 9 15 15 H 1.48497 * 109.47081 * 210.00332 * 13 11 9 16 16 H 1.48492 * 109.47303 * 330.00375 * 13 11 9 17 17 C 1.34770 * 120.00451 * 89.99225 * 7 6 5 18 18 O 1.21601 * 120.00004 * 4.09987 * 17 7 6 19 19 C 1.47429 * 119.99972 * 184.09218 * 17 7 6 20 20 C 1.41296 * 126.41887 * 325.31490 * 19 17 7 21 21 N 1.30444 * 108.02534 * 180.24532 * 20 19 17 22 22 N 1.39937 * 108.89741 * 359.65142 * 21 20 19 23 23 C 1.46495 * 125.75453 * 180.14859 * 22 21 20 24 24 C 1.53000 * 117.50060 * 163.87112 * 23 22 21 25 25 C 1.52997 * 60.00072 * 252.50985 * 24 23 22 26 26 C 1.34266 * 108.49015 * 0.35958 * 22 21 20 27 27 H 1.09002 * 109.47250 * 296.04839 * 1 2 3 28 28 H 1.09005 * 109.47062 * 56.04146 * 1 2 3 29 29 H 1.08997 * 109.47486 * 176.04621 * 1 2 3 30 30 H 1.09000 * 109.46655 * 183.94805 * 3 2 1 31 31 H 1.08990 * 109.46795 * 303.95204 * 3 2 1 32 32 H 1.09001 * 109.46933 * 63.95331 * 3 2 1 33 33 H 1.09004 * 109.47582 * 306.04446 * 4 2 1 34 34 H 1.09003 * 109.47210 * 186.04464 * 4 2 1 35 35 H 1.09004 * 109.47056 * 59.99450 * 5 4 2 36 36 H 1.09003 * 109.46885 * 299.99989 * 5 4 2 37 37 H 1.08991 * 109.47360 * 59.99736 * 6 5 4 38 38 H 1.08998 * 109.46681 * 299.99643 * 6 5 4 39 39 H 1.09005 * 109.46988 * 34.75107 * 8 7 6 40 40 H 1.09000 * 109.47159 * 154.75143 * 8 7 6 41 41 H 0.96998 * 120.00558 * 180.02562 * 12 11 9 42 42 H 1.07999 * 125.98171 * 359.97438 * 20 19 17 43 43 H 1.08998 * 115.54874 * 309.57323 * 23 22 21 44 44 H 1.09001 * 117.49863 * 359.97438 * 24 23 22 45 45 H 1.08995 * 117.50412 * 145.02358 * 24 23 22 46 46 H 1.09004 * 117.49886 * 252.51371 * 25 24 23 47 47 H 1.09002 * 117.52249 * 107.47923 * 25 24 23 48 48 H 1.07999 * 126.28787 * 179.77289 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9704 6 6 2.1790 -3.0403 2.1556 7 7 1.8310 -4.4543 1.9951 8 6 0.5739 -4.9664 2.5466 9 6 0.7735 -5.3343 3.9943 10 1 1.7401 -5.2005 4.4572 11 6 -0.2776 -5.8427 4.7276 12 7 -0.1036 -6.1633 5.9911 13 14 -1.9492 -6.0747 3.9268 14 1 -2.0298 -7.4342 3.3344 15 1 -3.0142 -5.9165 4.9494 16 1 -2.1324 -5.0582 2.8600 17 6 2.6670 -5.2840 1.3402 18 8 3.7435 -4.8770 0.9476 19 6 2.2764 -6.6852 1.0999 20 6 1.5116 -7.5025 1.9622 21 7 1.3846 -8.6733 1.4011 22 7 2.0454 -8.6589 0.1677 23 6 2.1324 -9.7812 -0.7699 24 6 2.5604 -9.4707 -2.2056 25 6 1.1059 -9.8363 -1.9031 26 6 2.5900 -7.4445 -0.0095 27 1 -0.3634 0.4513 0.9233 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0829 1.3431 -0.0708 31 1 1.5899 1.9162 -0.8524 32 1 1.7045 1.8723 0.9233 33 1 1.5611 -0.3872 2.0629 34 1 3.0797 -0.6612 1.1757 35 1 2.0657 -2.6214 0.0452 36 1 0.5471 -2.3475 0.9323 37 1 1.7443 -2.6615 3.0805 38 1 3.2633 -2.9355 2.1941 39 1 -0.1960 -4.1986 2.4697 40 1 0.2643 -5.8489 1.9867 41 1 -0.8430 -6.5213 6.5070 42 1 1.1072 -7.2105 2.9200 43 1 2.4595 -10.7281 -0.3405 44 1 2.7769 -8.4313 -2.4527 45 1 3.1692 -10.2134 -2.7211 46 1 0.7579 -10.8196 -2.2195 47 1 0.3655 -9.0378 -1.9508 48 1 3.1676 -7.1214 -0.8629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599166005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:28 Heat of formation + Delta-G solvation = 65.293366 kcal Electronic energy + Delta-G solvation = -27469.631295 eV Core-core repulsion = 23755.098269 eV Total energy + Delta-G solvation = -3714.533026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.44953 -40.42597 -38.61238 -38.02360 -36.90913 -34.80044 -33.32569 -32.01199 -31.16203 -29.88442 -28.47110 -27.38343 -25.13490 -24.46903 -23.74854 -23.48974 -22.44321 -21.74997 -21.16182 -20.17301 -19.05490 -18.53641 -17.44260 -17.15354 -16.76696 -16.47938 -16.33409 -16.10851 -15.87960 -15.56043 -15.36800 -15.00246 -14.87863 -14.74328 -14.32086 -14.00637 -13.80611 -13.42972 -13.24314 -13.21199 -13.07858 -12.68116 -12.59850 -12.54837 -12.48904 -12.37871 -12.31102 -12.20704 -12.01065 -11.86936 -11.69565 -11.49070 -11.47175 -10.87041 -10.74323 -10.41270 -9.63893 -9.35589 -9.30230 -8.32615 -6.38717 0.59460 1.23233 1.35395 1.37360 1.39770 1.46279 2.20331 2.30778 2.40103 2.60653 3.00642 3.06614 3.48735 3.63569 3.80251 3.86275 3.94861 3.99789 4.14254 4.20273 4.25449 4.41131 4.47660 4.51868 4.55438 4.64260 4.65975 4.67183 4.70625 4.75874 4.76567 4.82155 4.84894 4.91787 4.93751 5.02007 5.03103 5.09990 5.18520 5.28733 5.42522 5.53450 5.76654 5.99029 6.06121 6.12963 6.18397 6.58780 6.62292 6.70992 7.22250 7.37351 8.82763 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.008436 B = 0.004591 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.273608 B = 6096.820769 C = 8255.666296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.563 5.563 3 C 0.025 3.975 4 C 0.064 3.936 5 C -0.112 4.112 6 C 0.121 3.879 7 N -0.588 5.588 8 C 0.213 3.787 9 C -0.535 4.535 10 H 0.037 0.963 11 C 0.033 3.967 12 N -0.931 5.931 13 Si 0.922 3.078 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.240 1.240 17 C 0.594 3.406 18 O -0.593 6.593 19 C -0.310 4.310 20 C 0.074 3.926 21 N -0.329 5.329 22 N -0.334 5.334 23 C 0.042 3.958 24 C -0.142 4.142 25 C -0.170 4.170 26 C 0.126 3.874 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.270 0.730 42 H 0.196 0.804 43 H 0.150 0.850 44 H 0.108 0.892 45 H 0.147 0.853 46 H 0.135 0.865 47 H 0.087 0.913 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 2.313 -18.629 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.151 4.151 6 C -0.002 4.002 7 N -0.316 5.316 8 C 0.091 3.909 9 C -0.573 4.573 10 H 0.055 0.945 11 C -0.168 4.168 12 N -0.570 5.570 13 Si 0.745 3.255 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.163 1.163 17 C 0.384 3.616 18 O -0.476 6.476 19 C -0.324 4.324 20 C -0.112 4.112 21 N -0.148 5.148 22 N -0.111 5.111 23 C -0.059 4.059 24 C -0.180 4.180 25 C -0.208 4.208 26 C -0.026 4.026 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.212 0.788 43 H 0.167 0.833 44 H 0.126 0.874 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.106 0.894 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.897 0.945 -19.046 19.091 hybrid contribution -0.724 0.968 1.531 1.951 sum 0.173 1.913 -17.515 17.620 Atomic orbital electron populations 1.22463 0.86915 1.02368 1.01006 1.61968 1.08740 1.14838 1.43182 1.22424 1.01057 0.87762 1.01073 1.21969 1.00481 0.92397 0.91597 1.21751 1.00924 0.94487 0.97900 1.21329 1.00623 0.79620 0.98612 1.47694 1.21373 1.09067 1.53510 1.19829 0.82652 0.95796 0.92610 1.21425 0.97495 1.43116 0.95260 0.94481 1.25604 1.02147 0.94139 0.94862 1.70019 1.33846 1.43809 1.09346 0.86093 0.79693 0.80293 0.79470 1.19163 1.20530 1.16323 1.17464 0.82863 0.84465 0.76857 1.90637 1.23221 1.78355 1.55427 1.20305 1.14938 0.96883 1.00314 1.25110 0.95447 0.89779 1.00821 1.77182 1.20408 1.21983 0.95267 1.48189 1.38507 1.09870 1.14541 1.22280 1.09986 0.89295 0.84342 1.23633 0.97750 1.05356 0.91293 1.23543 0.93233 1.05273 0.98703 1.23066 0.95675 0.84591 0.99285 0.95419 0.90095 0.91874 0.91025 0.90192 0.95348 0.94244 0.90332 0.92399 0.91917 0.90548 0.91236 0.94089 0.93773 0.92082 0.78753 0.83281 0.87372 0.83462 0.84728 0.89436 0.77132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.32 127.69 1.19 1.62 16 2 N -0.56 -13.30 5.02 -948.83 -4.76 -18.06 16 3 C 0.02 0.45 9.57 127.69 1.22 1.67 16 4 C 0.06 1.66 4.96 86.30 0.43 2.08 16 5 C -0.11 -3.45 5.46 30.60 0.17 -3.28 16 6 C 0.12 4.49 5.46 86.38 0.47 4.96 16 7 N -0.59 -25.11 2.46 -830.04 -2.04 -27.15 16 8 C 0.21 9.62 3.75 85.63 0.32 9.94 16 9 C -0.53 -28.58 7.83 25.60 0.20 -28.38 16 10 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 11 C 0.03 1.79 5.28 84.66 0.45 2.24 16 12 N -0.93 -55.02 13.96 21.45 0.30 -54.72 16 13 Si 0.92 40.92 27.47 68.60 1.88 42.81 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 17 C 0.59 26.06 7.60 86.67 0.66 26.72 16 18 O -0.59 -27.53 16.61 -4.03 -0.07 -27.60 16 19 C -0.31 -12.66 5.46 -20.15 -0.11 -12.77 16 20 C 0.07 3.27 9.55 85.65 0.82 4.09 16 21 N -0.33 -13.30 12.50 -56.27 -0.70 -14.00 16 22 N -0.33 -10.44 3.91 -325.76 -1.27 -11.71 16 23 C 0.04 0.85 7.12 44.99 0.32 1.18 16 24 C -0.14 -1.70 9.97 30.59 0.31 -1.39 16 25 C -0.17 -2.56 10.46 30.59 0.32 -2.24 16 26 C 0.13 4.04 10.77 84.27 0.91 4.95 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 1.41 8.12 -2.38 -0.02 1.40 16 29 H 0.06 1.45 6.47 -2.39 -0.02 1.43 16 30 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.04 0.99 8.12 -2.38 -0.02 0.97 16 34 H 0.08 1.97 8.06 -2.39 -0.02 1.96 16 35 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.06 1.93 6.55 -2.39 -0.02 1.91 16 37 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 38 H 0.07 2.65 7.37 -2.39 -0.02 2.63 16 39 H 0.04 1.77 7.17 -2.38 -0.02 1.75 16 40 H 0.04 2.00 4.36 -2.39 -0.01 1.99 16 41 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.20 9.73 4.60 -2.91 -0.01 9.72 16 43 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.11 1.29 6.98 -2.39 -0.02 1.27 16 45 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.21 5.12 7.20 -2.91 -0.02 5.10 16 Total: -1.00 -71.43 387.91 1.90 -69.54 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.89 Total: 29.51 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.67 Total: 11.40 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -8.48 Total: -125.65 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.07 Total: -27.60 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.81 kcal Total: -71.43 1.90 -69.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599166005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.830 kcal (2) G-P(sol) polarization free energy of solvation -71.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds