Wall clock time and date at job start Sat Apr 11 2020 00:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 111.00019 * 2 1 4 4 C 1.46899 * 111.00354 * 123.95064 * 2 1 3 5 5 C 1.53001 * 109.46737 * 66.05041 * 4 2 1 6 6 N 1.46500 * 109.47405 * 180.02562 * 5 4 2 7 7 C 1.34257 * 125.76061 * 124.99344 * 6 5 4 8 8 C 1.38040 * 107.41915 * 180.02562 * 7 6 5 9 9 C 1.47431 * 126.41002 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00374 * 330.36609 * 9 8 7 11 11 N 1.34777 * 119.99604 * 150.36855 * 9 8 7 12 12 C 1.46933 * 120.63219 * 353.75200 * 11 9 8 13 13 C 1.53188 * 108.89502 * 233.51786 * 12 11 9 14 14 C 1.53078 * 109.29483 * 305.57661 * 13 12 11 15 15 C 1.50700 * 109.44130 * 181.23719 * 14 13 12 16 16 H 1.08004 * 119.99627 * 239.80157 * 15 14 13 17 17 C 1.37879 * 120.00182 * 59.79363 * 15 14 13 18 18 N 1.31519 * 119.99519 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00038 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47047 * 90.00396 * 19 17 15 21 21 H 1.48495 * 109.47226 * 210.00325 * 19 17 15 22 22 H 1.48503 * 109.47422 * 330.00474 * 19 17 15 23 23 C 1.53043 * 109.65682 * 61.15615 * 14 13 12 24 24 C 1.46933 * 120.63216 * 173.73392 * 11 9 8 25 25 C 1.41283 * 107.17302 * 0.24927 * 8 7 6 26 26 N 1.30452 * 108.02222 * 359.58222 * 25 8 7 27 27 H 1.09002 * 109.46953 * 296.04409 * 1 2 3 28 28 H 1.08998 * 109.47026 * 56.04715 * 1 2 3 29 29 H 1.09000 * 109.46515 * 176.04807 * 1 2 3 30 30 H 1.08992 * 109.47175 * 183.95348 * 3 2 1 31 31 H 1.08998 * 109.47237 * 303.95706 * 3 2 1 32 32 H 1.09003 * 109.46879 * 63.95242 * 3 2 1 33 33 H 1.08997 * 109.47601 * 306.04964 * 4 2 1 34 34 H 1.09001 * 109.47566 * 186.04757 * 4 2 1 35 35 H 1.09002 * 109.47578 * 59.99817 * 5 4 2 36 36 H 1.09001 * 109.46839 * 299.99592 * 5 4 2 37 37 H 1.08006 * 126.28780 * 0.02772 * 7 6 5 38 38 H 1.09000 * 109.58151 * 353.37665 * 12 11 9 39 39 H 1.09001 * 109.58642 * 113.65664 * 12 11 9 40 40 H 1.09000 * 109.49683 * 65.38816 * 13 12 11 41 41 H 1.08998 * 109.49988 * 185.48380 * 13 12 11 42 42 H 1.09003 * 109.34758 * 301.13138 * 14 13 12 43 43 H 0.96999 * 119.99193 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.49711 * 178.74978 * 23 14 13 45 45 H 1.09003 * 109.52725 * 58.66197 * 23 14 13 46 46 H 1.08997 * 109.58368 * 246.20060 * 24 11 9 47 47 H 1.08994 * 109.58101 * 6.48124 * 24 11 9 48 48 H 1.07999 * 125.99107 * 179.74279 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 7 2.1561 -3.0064 2.1050 7 6 1.4386 -3.8026 2.9137 8 6 2.3057 -4.3310 3.8488 9 6 1.9569 -5.2604 4.9388 10 8 0.8458 -5.2299 5.4317 11 7 2.8698 -6.1440 5.3889 12 6 4.1680 -6.2876 4.7158 13 6 4.3828 -7.7625 4.3620 14 6 4.2289 -8.6133 5.6252 15 6 4.4696 -10.0619 5.2866 16 1 3.6920 -10.7923 5.4554 17 6 5.6823 -10.4549 4.7613 18 7 6.6292 -9.5654 4.5562 19 14 5.9809 -12.2505 4.3424 20 1 5.5714 -12.5059 2.9380 21 1 7.4239 -12.5627 4.5017 22 1 5.1848 -13.1107 5.2543 23 6 2.8149 -8.4492 6.1872 24 6 2.5858 -6.9817 6.5621 25 6 3.5887 -3.8093 3.5698 26 7 3.4895 -3.0287 2.5293 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3632 -1.0253 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5898 1.9164 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5612 -0.3872 2.0628 34 1 3.0798 -0.6610 1.1756 35 1 2.0659 -2.6213 0.0451 36 1 0.5473 -2.3475 0.9323 37 1 0.3780 -3.9943 2.8451 38 1 4.1756 -5.6885 3.8053 39 1 4.9635 -5.9517 5.3809 40 1 3.6416 -8.0715 3.6249 41 1 5.3833 -7.8959 3.9505 42 1 4.9556 -8.2888 6.3699 43 1 7.4825 -9.8420 4.1871 44 1 2.7011 -9.0731 7.0737 45 1 2.0864 -8.7503 5.4344 46 1 3.2526 -6.7047 7.3787 47 1 1.5505 -6.8386 6.8712 48 1 4.4936 -4.0217 4.1197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601422279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:23:40 Heat of formation + Delta-G solvation = 33.807632 kcal Electronic energy + Delta-G solvation = -26990.890237 eV Core-core repulsion = 23274.991888 eV Total energy + Delta-G solvation = -3715.898350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50684 -40.63011 -38.66500 -38.25573 -35.36987 -34.65475 -33.02709 -31.81394 -31.36743 -29.95552 -28.53248 -28.00008 -25.85118 -25.10070 -23.96282 -23.08359 -22.61227 -21.53806 -21.23784 -19.97891 -18.61963 -18.22132 -17.37221 -16.91940 -16.86558 -16.46666 -16.30063 -16.03660 -15.93186 -15.42615 -14.98635 -14.90608 -14.67570 -14.56246 -14.45406 -14.12893 -13.92953 -13.70460 -13.39853 -13.22506 -13.07618 -12.90072 -12.77473 -12.68744 -12.56200 -12.44052 -12.36417 -12.11439 -11.92279 -11.79956 -11.43553 -10.97211 -10.96076 -10.74421 -10.51585 -10.34778 -9.77757 -9.46816 -9.39331 -8.05616 -6.18373 0.56521 1.14582 1.31158 1.42028 1.44052 1.52926 2.08369 2.41161 2.46137 2.91285 3.20763 3.39871 3.75048 3.82227 3.86384 4.01082 4.13751 4.18762 4.28055 4.31649 4.33621 4.41003 4.46331 4.52578 4.60552 4.62745 4.63031 4.65946 4.77512 4.80188 4.82375 4.92470 4.98902 5.02133 5.02627 5.23427 5.27523 5.37122 5.47307 5.62121 5.69466 5.78725 5.90895 5.98426 6.02166 6.15956 6.42183 6.49440 6.58592 6.91088 7.25330 7.48849 8.97678 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.002520 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.312710 B =11108.155913 C =11878.493385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.053 3.947 5 C 0.131 3.869 6 N -0.356 5.356 7 C 0.132 3.868 8 C -0.310 4.310 9 C 0.592 3.408 10 O -0.594 6.594 11 N -0.599 5.599 12 C 0.108 3.892 13 C -0.113 4.113 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.047 0.953 17 C 0.017 3.983 18 N -0.911 5.911 19 Si 0.948 3.052 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.113 4.113 24 C 0.118 3.882 25 C 0.080 3.920 26 N -0.312 5.312 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.210 0.790 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.006 0.994 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 20.386 -8.655 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.278 5.278 3 C -0.124 4.124 4 C -0.076 4.076 5 C 0.011 3.989 6 N -0.134 5.134 7 C -0.020 4.020 8 C -0.325 4.325 9 C 0.382 3.618 10 O -0.476 6.476 11 N -0.329 5.329 12 C -0.014 4.014 13 C -0.152 4.152 14 C 0.027 3.973 15 C -0.572 4.572 16 H 0.065 0.935 17 C -0.182 4.182 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.151 4.151 24 C -0.004 4.004 25 C -0.106 4.106 26 N -0.132 5.132 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.226 0.774 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.040 0.960 41 H 0.098 0.902 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.655 21.053 -9.838 25.164 hybrid contribution -0.145 -1.449 1.195 1.883 sum -9.800 19.604 -8.644 23.560 Atomic orbital electron populations 1.22608 0.86050 1.03424 1.01397 1.61933 1.09251 1.14917 1.41665 1.22429 1.01063 0.87630 1.01246 1.22185 1.01207 0.92142 0.92089 1.22030 1.00873 0.90343 0.85649 1.48662 1.05389 1.34872 1.24519 1.23231 0.99213 0.90229 0.89330 1.20192 0.95274 1.11804 1.05195 1.17607 0.83235 0.79438 0.81495 1.90676 1.22535 1.73250 1.61177 1.48028 1.17019 1.37523 1.30375 1.22221 0.83382 0.98200 0.97612 1.21783 1.01683 0.92757 0.98981 1.18622 0.91428 0.93988 0.93284 1.21553 0.99026 0.94574 1.42010 0.93509 1.25633 0.96027 1.00913 0.95644 1.69949 1.05105 1.34503 1.45499 0.85718 0.77192 0.81264 0.78426 1.20480 1.20809 1.19696 1.21845 0.98436 0.94675 1.00164 1.21608 1.01741 0.90003 0.87024 1.24457 0.98009 0.93817 0.94351 1.77131 0.96693 1.23721 1.15693 0.95359 0.89962 0.90084 0.91280 0.89727 0.95492 0.94732 0.90505 0.88012 0.85609 0.77381 0.88413 0.90936 0.95994 0.90243 0.97570 0.92963 0.91649 0.94198 0.90812 0.89946 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.32 127.69 1.19 1.30 16 2 N -0.55 -6.89 5.02 -948.84 -4.76 -11.66 16 3 C 0.02 0.26 9.57 127.69 1.22 1.48 16 4 C 0.05 0.78 5.13 86.30 0.44 1.22 16 5 C 0.13 1.85 6.41 86.38 0.55 2.40 16 6 N -0.36 -7.61 3.65 -346.29 -1.26 -8.87 16 7 C 0.13 3.07 11.36 84.28 0.96 4.03 16 8 C -0.31 -9.09 5.52 -20.15 -0.11 -9.20 16 9 C 0.59 21.03 7.62 86.66 0.66 21.69 16 10 O -0.59 -23.95 16.44 -4.02 -0.07 -24.01 16 11 N -0.60 -21.59 2.97 -822.77 -2.45 -24.04 16 12 C 0.11 3.84 5.21 86.36 0.45 4.29 16 13 C -0.11 -5.13 5.16 30.68 0.16 -4.97 16 14 C 0.05 2.20 2.06 -11.50 -0.02 2.17 16 15 C -0.53 -29.00 8.56 25.60 0.22 -28.79 16 16 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 17 C 0.02 0.91 5.30 84.65 0.45 1.36 16 18 N -0.91 -50.62 11.30 21.45 0.24 -50.38 16 19 Si 0.95 43.20 29.54 68.60 2.03 45.22 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.11 -4.70 5.30 30.67 0.16 -4.53 16 24 C 0.12 4.31 6.44 86.36 0.56 4.87 16 25 C 0.08 2.18 9.58 85.65 0.82 3.00 16 26 N -0.31 -8.19 12.33 -56.28 -0.69 -8.89 16 27 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.08 0.53 6.47 -2.39 -0.02 0.51 16 30 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 31 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 34 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.13 1.07 6.47 -2.39 -0.02 1.05 16 37 H 0.21 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.10 3.12 4.22 -2.39 -0.01 3.11 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 4.01 6.03 -2.39 -0.01 3.99 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.08 2.97 7.00 -2.39 -0.02 2.95 16 48 H 0.20 4.89 6.51 -2.91 -0.02 4.87 16 Total: -1.00 -67.21 379.77 1.68 -65.52 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.94 Total: 16.78 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 7.71 Total: 0.32 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -8.92 Total: -103.83 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.07 Total: -24.01 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.21 1.68 -65.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.328 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds