Wall clock time and date at job start Sat Apr 11 2020 00:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.46863 * 2 1 4 4 C 1.46900 * 110.99981 * 71.88798 * 3 2 1 5 5 C 1.53004 * 109.47220 * 68.54288 * 4 3 2 6 6 C 1.46898 * 111.00308 * 195.84009 * 3 2 1 7 7 C 1.52988 * 109.47318 * 161.58465 * 6 3 2 8 8 H 1.08997 * 109.47626 * 304.26860 * 7 6 3 9 9 C 1.53005 * 109.47137 * 184.26508 * 7 6 3 10 10 N 1.46505 * 109.47018 * 64.26785 * 7 6 3 11 11 C 1.34770 * 119.99872 * 213.38100 * 10 7 6 12 12 O 1.21579 * 120.00354 * 359.97438 * 11 10 7 13 13 N 1.34785 * 119.99830 * 179.97438 * 11 10 7 14 14 C 1.39461 * 120.00028 * 185.02020 * 13 11 10 15 15 C 1.38640 * 119.64809 * 174.76418 * 14 13 11 16 16 C 1.40821 * 118.67572 * 180.25523 * 15 14 13 17 17 C 1.41542 * 120.99829 * 179.74538 * 16 15 14 18 18 H 1.08005 * 119.99798 * 32.74249 * 17 16 15 19 19 C 1.40026 * 120.00096 * 212.73593 * 17 16 15 20 20 N 1.30745 * 119.99770 * 6.25020 * 19 17 16 21 21 Si 1.86797 * 120.00091 * 186.24530 * 19 17 16 22 22 H 1.48496 * 109.47230 * 90.00566 * 21 19 17 23 23 H 1.48508 * 109.47253 * 210.00528 * 21 19 17 24 24 H 1.48492 * 109.47367 * 330.00174 * 21 19 17 25 25 C 1.41165 * 118.00306 * 359.50996 * 16 15 14 26 26 C 1.36597 * 119.12596 * 0.51277 * 25 16 15 27 27 N 1.32064 * 121.25822 * 359.72587 * 26 25 16 28 28 H 1.09003 * 109.47164 * 184.72025 * 1 2 3 29 29 H 1.09000 * 109.47572 * 304.71725 * 1 2 3 30 30 H 1.08994 * 109.47865 * 64.72171 * 1 2 3 31 31 H 1.08999 * 109.47015 * 240.00214 * 2 1 3 32 32 H 1.08993 * 109.47308 * 119.99904 * 2 1 3 33 33 H 1.08995 * 109.47445 * 188.54382 * 4 3 2 34 34 H 1.09008 * 109.47304 * 308.54480 * 4 3 2 35 35 H 1.09007 * 109.46731 * 304.50113 * 5 4 3 36 36 H 1.08999 * 109.47209 * 64.50000 * 5 4 3 37 37 H 1.08999 * 109.47129 * 184.50298 * 5 4 3 38 38 H 1.09009 * 109.46575 * 41.58916 * 6 3 2 39 39 H 1.09001 * 109.47245 * 281.59436 * 6 3 2 40 40 H 1.09000 * 109.47214 * 299.99700 * 9 7 6 41 41 H 1.08995 * 109.46855 * 60.00648 * 9 7 6 42 42 H 1.09009 * 109.47228 * 180.02562 * 9 7 6 43 43 H 0.96998 * 119.99724 * 33.37851 * 10 7 6 44 44 H 0.97001 * 119.99842 * 5.02476 * 13 11 10 45 45 H 1.08002 * 120.66060 * 359.97438 * 15 14 13 46 46 H 0.97006 * 119.99511 * 179.97438 * 20 19 17 47 47 H 1.07999 * 120.43726 * 180.26456 * 25 16 15 48 48 H 1.07996 * 119.36587 * 179.75013 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7930 2.0235 1.3035 5 6 2.6979 1.3750 2.3531 6 6 3.4389 1.4418 -0.3743 7 6 3.7953 2.8647 -0.8087 8 1 3.1311 3.1757 -1.6150 9 6 5.2442 2.9004 -1.2992 10 7 3.6423 3.7753 0.3287 11 6 3.2366 5.0444 0.1259 12 8 2.9982 5.4338 -1.0009 13 7 3.0953 5.8821 1.1724 14 6 2.5763 7.1615 0.9763 15 6 2.3320 7.9776 2.0701 16 6 1.8027 9.2637 1.8489 17 6 1.5295 10.1354 2.9301 18 1 2.1479 10.1082 3.8152 19 6 0.4577 11.0331 2.8521 20 7 -0.3639 10.9835 1.8362 21 14 0.2015 12.3012 4.1995 22 1 0.9422 13.5423 3.8585 23 1 -1.2465 12.6070 4.3227 24 1 0.7050 11.7626 5.4884 25 6 1.5574 9.6592 0.5162 26 6 1.8298 8.7852 -0.4976 27 7 2.3214 7.5841 -0.2533 28 1 -0.3633 -1.0242 0.0846 29 1 -0.3634 0.5853 0.8447 30 1 -0.3634 0.4388 -0.9292 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0231 3.0865 1.2323 34 1 0.7502 1.8961 1.5942 35 1 2.5239 0.2990 2.3679 36 1 3.7409 1.5711 2.1048 37 1 2.4733 1.7928 3.3345 38 1 3.6251 0.7529 -1.1984 39 1 4.0519 1.1587 0.4813 40 1 5.9085 2.5896 -0.4928 41 1 5.3581 2.2230 -2.1454 42 1 5.4984 3.9144 -1.6083 43 1 3.8328 3.4647 1.2276 44 1 3.3547 5.5949 2.0619 45 1 2.5393 7.6322 3.0722 46 1 -1.1066 11.6052 1.7824 47 1 1.1560 10.6385 0.3012 48 1 1.6398 9.0823 -1.5183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871723158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:24:57 Heat of formation + Delta-G solvation = 2.121923 kcal Electronic energy + Delta-G solvation = -27390.291040 eV Core-core repulsion = 23673.018695 eV Total energy + Delta-G solvation = -3717.272345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57494 -40.23708 -39.20095 -36.50221 -35.86621 -35.30348 -32.58696 -32.53483 -32.24194 -30.23449 -29.66422 -27.87146 -26.37922 -24.88785 -23.97317 -23.61459 -22.16091 -21.59740 -20.87704 -19.66864 -19.30599 -17.78478 -17.35327 -17.03418 -16.81418 -16.32973 -16.19109 -15.98975 -15.88168 -15.36935 -15.00625 -14.75425 -14.60307 -14.36882 -14.17981 -14.02735 -13.76014 -13.53038 -13.19025 -13.02540 -12.97533 -12.87442 -12.80863 -12.77092 -12.39148 -12.31032 -12.08630 -11.98161 -11.82914 -11.78248 -11.49451 -11.43308 -11.21746 -11.12141 -9.90707 -9.86582 -9.59072 -9.08879 -8.82213 -8.56508 -6.56836 0.84160 1.01357 1.42047 1.54466 1.58419 1.66341 2.22315 2.36056 2.87961 2.97115 3.21551 3.75064 3.88390 4.01969 4.09470 4.14410 4.30379 4.36262 4.38936 4.43049 4.53960 4.65010 4.69500 4.69770 4.72171 4.80676 4.84794 4.88572 4.93964 5.02652 5.05610 5.08680 5.13469 5.16870 5.26498 5.27304 5.31767 5.46100 5.49323 5.66055 5.66264 5.92030 5.98642 6.20389 6.24645 6.28550 6.55977 6.81224 6.85947 7.03683 7.67333 7.92667 8.35205 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.002785 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.873800 B =10051.510053 C =10673.052017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.554 5.554 4 C 0.031 3.969 5 C -0.187 4.187 6 C 0.050 3.950 7 C 0.162 3.838 8 H 0.063 0.937 9 C -0.155 4.155 10 N -0.719 5.719 11 C 0.690 3.310 12 O -0.579 6.579 13 N -0.661 5.661 14 C 0.366 3.634 15 C -0.307 4.307 16 C 0.124 3.876 17 C -0.489 4.489 18 H 0.087 0.913 19 C 0.033 3.967 20 N -0.830 5.830 21 Si 0.992 3.008 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.234 4.234 26 C 0.097 3.903 27 N -0.571 5.571 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.033 0.967 43 H 0.404 0.596 44 H 0.421 0.579 45 H 0.125 0.875 46 H 0.289 0.711 47 H 0.112 0.888 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -20.551 2.823 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.278 5.278 4 C -0.098 4.098 5 C -0.245 4.245 6 C -0.078 4.078 7 C 0.057 3.943 8 H 0.081 0.919 9 C -0.214 4.214 10 N -0.378 5.378 11 C 0.390 3.610 12 O -0.453 6.453 13 N -0.310 5.310 14 C 0.135 3.865 15 C -0.332 4.332 16 C 0.116 3.884 17 C -0.521 4.521 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.456 5.456 21 Si 0.813 3.187 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.178 1.178 25 C -0.258 4.258 26 C -0.054 4.054 27 N -0.291 5.291 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.242 0.758 44 H 0.258 0.742 45 H 0.143 0.857 46 H 0.100 0.900 47 H 0.130 0.870 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.159 -20.505 0.567 21.418 hybrid contribution -0.093 0.812 2.280 2.422 sum 6.066 -19.693 2.847 20.802 Atomic orbital electron populations 1.21772 0.95448 1.01788 1.01469 1.22169 0.95867 0.88231 1.01631 1.62104 1.18034 1.18058 1.29581 1.22483 0.99904 0.99784 0.87592 1.22387 1.00577 1.01739 0.99839 1.22516 0.88398 0.94938 1.01974 1.20920 0.97049 0.88341 0.87986 0.91883 1.22105 0.95128 1.01670 1.02453 1.45319 1.72328 1.08811 1.11384 1.16241 0.78735 0.81622 0.84392 1.90991 1.55438 1.76029 1.22835 1.42427 1.65869 1.11598 1.11153 1.18023 0.93470 0.84889 0.90089 1.21453 1.18904 0.95813 0.97071 1.17991 0.86426 0.90747 0.93279 1.19819 1.13023 1.17029 1.02187 0.89491 1.26856 0.93994 0.98303 0.99018 1.69827 1.12209 1.33334 1.30257 0.85046 0.78217 0.77474 0.78007 1.18678 1.19539 1.17772 1.21913 1.09042 1.01259 0.93565 1.21891 0.95620 0.89056 0.98793 1.67335 1.22277 1.17790 1.21723 0.90883 0.93640 0.93500 0.89995 0.93362 0.91029 0.91906 0.91754 0.91383 0.91311 0.87875 0.91481 0.90649 0.89653 0.94771 0.75814 0.74165 0.85718 0.90043 0.86960 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.04 71.98 0.72 -1.69 16 2 C 0.05 0.72 5.59 86.30 0.48 1.20 16 3 N -0.55 -10.70 4.61 -896.24 -4.13 -14.82 16 4 C 0.03 0.60 5.38 86.30 0.46 1.07 16 5 C -0.19 -2.46 8.80 71.98 0.63 -1.83 16 6 C 0.05 0.78 4.54 86.30 0.39 1.17 16 7 C 0.16 3.68 2.94 44.99 0.13 3.81 16 8 H 0.06 1.97 7.32 -2.39 -0.02 1.96 16 9 C -0.15 -2.93 9.52 71.98 0.69 -2.24 16 10 N -0.72 -18.04 2.85 -457.83 -1.30 -19.34 16 11 C 0.69 25.83 8.14 179.05 1.46 27.28 16 12 O -0.58 -28.08 14.13 -3.97 -0.06 -28.14 16 13 N -0.66 -24.46 5.40 -322.36 -1.74 -26.20 16 14 C 0.37 17.56 7.42 132.76 0.98 18.54 16 15 C -0.31 -14.89 9.74 23.00 0.22 -14.67 16 16 C 0.12 6.71 5.53 -21.11 -0.12 6.59 16 17 C -0.49 -25.56 9.11 23.52 0.21 -25.35 16 18 H 0.09 4.26 7.85 -2.91 -0.02 4.24 16 19 C 0.03 1.65 5.33 85.29 0.45 2.10 16 20 N -0.83 -43.24 10.98 21.84 0.24 -43.00 16 21 Si 0.99 37.09 29.56 68.60 2.03 39.12 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 25 C -0.23 -12.79 8.68 22.60 0.20 -12.59 16 26 C 0.10 5.14 11.10 84.27 0.94 6.07 16 27 N -0.57 -30.62 7.86 -194.27 -1.53 -32.15 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.83 6.47 -2.39 -0.02 0.82 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.04 7.70 -2.39 -0.02 1.03 16 32 H 0.05 0.61 6.10 -2.39 -0.01 0.59 16 33 H 0.07 1.74 4.87 -2.39 -0.01 1.73 16 34 H 0.06 1.35 6.36 -2.38 -0.02 1.33 16 35 H 0.06 0.77 6.27 -2.38 -0.01 0.76 16 36 H 0.07 0.74 5.44 -2.39 -0.01 0.73 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 1.28 7.68 -2.38 -0.02 1.26 16 39 H 0.07 0.79 5.59 -2.39 -0.01 0.78 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.40 7.49 6.32 -92.71 -0.59 6.90 16 44 H 0.42 11.58 8.72 -92.71 -0.81 10.77 16 45 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 46 H 0.29 13.64 8.29 -92.70 -0.77 12.87 16 47 H 0.11 6.27 6.50 -2.91 -0.02 6.25 16 48 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -72.72 374.98 0.98 -71.75 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.40 Total: 43.31 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 7.86 Total: 9.48 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -8.46 Total: -135.52 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.06 Total: -28.14 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -72.72 0.98 -71.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871723158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.867 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds