Wall clock time and date at job start Sat Apr 11 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99791 * 2 1 4 4 C 1.53001 * 109.47160 * 270.00219 * 3 2 1 5 5 C 1.53000 * 109.46765 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46765 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47132 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47634 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47367 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00293 * 180.02562 * 2 1 3 11 11 O 1.21568 * 120.00237 * 179.97438 * 10 2 1 12 12 N 1.34773 * 119.99662 * 0.02562 * 10 2 1 13 13 C 1.39250 * 119.99978 * 183.66124 * 12 10 2 14 14 C 1.39689 * 119.57221 * 339.03991 * 13 12 10 15 15 C 1.38640 * 119.49200 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67474 * 359.74168 * 15 14 13 17 17 C 1.40577 * 119.13030 * 0.50004 * 16 15 14 18 18 C 1.41329 * 119.78722 * 179.77062 * 17 16 15 19 19 H 1.08004 * 120.00229 * 4.86671 * 18 17 16 20 20 C 1.40026 * 119.99925 * 184.86791 * 18 17 16 21 21 N 1.30741 * 120.00184 * 184.81816 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 4.81588 * 20 18 17 23 23 H 1.48501 * 109.47292 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47136 * 300.00002 * 22 20 18 25 25 H 1.48503 * 109.47143 * 59.99811 * 22 20 18 26 26 N 1.31900 * 119.57734 * 159.06345 * 13 12 10 27 27 H 1.08992 * 109.47159 * 269.99709 * 1 2 3 28 28 H 1.09000 * 109.47494 * 30.00044 * 1 2 3 29 29 H 1.09001 * 109.46870 * 149.99408 * 1 2 3 30 30 H 1.08997 * 109.47092 * 30.00389 * 3 2 1 31 31 H 1.08996 * 109.46868 * 149.99875 * 3 2 1 32 32 H 1.09004 * 109.47052 * 299.99755 * 4 3 2 33 33 H 1.08996 * 109.47512 * 60.00050 * 4 3 2 34 34 H 1.09004 * 109.46972 * 299.99603 * 5 4 3 35 35 H 1.08996 * 109.47229 * 59.99676 * 5 4 3 36 36 H 1.09004 * 109.47052 * 299.99554 * 6 5 4 37 37 H 1.08996 * 109.47512 * 59.99849 * 6 5 4 38 38 H 1.09007 * 109.47242 * 299.99616 * 7 6 5 39 39 H 1.08998 * 109.47598 * 59.99598 * 7 6 5 40 40 H 1.09004 * 109.46749 * 299.99619 * 8 7 6 41 41 H 1.08998 * 109.47007 * 59.99174 * 8 7 6 42 42 H 1.00901 * 110.99602 * 179.97438 * 9 8 7 43 43 H 1.00894 * 110.99588 * 303.94806 * 9 8 7 44 44 H 0.97001 * 120.00583 * 3.65442 * 12 10 2 45 45 H 1.08002 * 120.25160 * 359.97438 * 14 13 12 46 46 H 1.08003 * 120.66512 * 179.97438 * 15 14 13 47 47 H 1.08005 * 120.43675 * 180.24671 * 16 15 14 48 48 H 0.97001 * 120.00183 * 354.98460 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4424 6 6 3.4734 3.4766 -2.8849 7 6 4.2395 4.8010 -2.8849 8 6 4.4945 5.2428 -4.3273 9 7 5.2306 6.5141 -4.3273 10 6 2.1389 -1.1672 -0.0005 11 8 3.3546 -1.1672 -0.0010 12 7 1.4651 -2.3343 -0.0016 13 6 2.1592 -3.5391 0.0749 14 6 3.5085 -3.5813 -0.2840 15 6 4.1978 -4.7818 -0.2077 16 6 3.5235 -5.9078 0.2300 17 6 2.1641 -5.8017 0.5719 18 6 1.4606 -6.9442 1.0160 19 1 1.9848 -7.8763 1.1671 20 6 0.0839 -6.8676 1.2601 21 7 -0.5495 -7.8962 1.7602 22 14 -0.8476 -5.2958 0.8713 23 1 -2.2807 -5.4708 1.2190 24 1 -0.2800 -4.1752 1.6634 25 1 -0.7226 -4.9916 -0.5768 26 7 1.5340 -4.6258 0.4848 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1498 1.1385 0.5138 32 1 3.0416 0.9509 -1.9564 33 1 1.5001 1.8409 -1.9563 34 1 2.6291 3.7951 -0.9284 35 1 4.1703 2.9045 -0.9287 36 1 4.0624 2.7167 -3.3985 37 1 2.5213 3.6073 -3.3990 38 1 3.6509 5.5613 -2.3712 39 1 5.1917 4.6701 -2.3709 40 1 5.0829 4.4828 -4.8414 41 1 3.5421 5.3739 -4.8409 42 1 5.4117 6.8271 -5.2693 43 1 4.7357 7.2184 -3.8008 44 1 0.4966 -2.3352 -0.0555 45 1 4.0107 -2.6858 -0.6191 46 1 5.2413 -4.8361 -0.4809 47 1 4.0338 -6.8568 0.3041 48 1 -0.0820 -8.7355 1.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883585882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:25:23 Heat of formation + Delta-G solvation = -13.987682 kcal Electronic energy + Delta-G solvation = -26363.138316 eV Core-core repulsion = 22645.167406 eV Total energy + Delta-G solvation = -3717.970910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49498 -38.48463 -37.19284 -35.97973 -34.70149 -34.24554 -33.40917 -31.21546 -31.02225 -29.34123 -27.61478 -26.32773 -25.24940 -23.78365 -22.04501 -21.67467 -21.33275 -21.12305 -19.52979 -18.50070 -17.96671 -16.86068 -16.50720 -15.96779 -15.69570 -15.57037 -15.09454 -14.92673 -14.76224 -14.35120 -13.95011 -13.76312 -13.42932 -13.33314 -13.07853 -12.90399 -12.79907 -12.67618 -12.40745 -12.21312 -11.96184 -11.83543 -11.70079 -11.28530 -11.19461 -11.02831 -10.99689 -10.82251 -10.69568 -10.31722 -9.97836 -9.65437 -9.27541 -9.17253 -9.14096 -8.70724 -8.51260 -7.72363 -7.40898 -7.18896 -4.74723 2.41632 2.64958 2.69358 3.41599 3.51234 3.65739 3.90139 4.01239 4.06600 4.39986 4.49954 4.60015 4.66477 4.79566 4.81410 4.94038 4.95007 5.04419 5.19954 5.25962 5.32018 5.44370 5.48495 5.52920 5.55619 5.59328 5.62633 5.73721 5.82171 5.89138 5.97445 6.08015 6.12597 6.15516 6.34398 6.50764 6.57460 6.64862 6.73694 6.87281 6.94465 7.19959 7.33657 7.46560 7.66089 7.78854 7.89685 8.20119 8.35968 8.66037 8.77154 9.44082 10.01839 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002341 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.016925 B =11959.535478 C =12781.853358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.634 5.634 3 C 0.135 3.865 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.119 4.119 8 C 0.058 3.942 9 N -0.854 5.854 10 C 0.710 3.290 11 O -0.561 6.561 12 N -0.666 5.666 13 C 0.401 3.599 14 C -0.312 4.312 15 C -0.035 4.035 16 C -0.280 4.280 17 C 0.274 3.726 18 C -0.478 4.478 19 H 0.083 0.917 20 C 0.043 3.957 21 N -0.808 5.808 22 Si 1.153 2.847 23 H -0.333 1.333 24 H -0.280 1.280 25 H -0.295 1.295 26 N -0.600 5.600 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.341 0.659 43 H 0.339 0.661 44 H 0.402 0.598 45 H 0.148 0.852 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 24.273 -8.219 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.372 5.372 3 C 0.012 3.988 4 C -0.175 4.175 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.072 4.072 9 N -0.383 5.383 10 C 0.412 3.588 11 O -0.437 6.437 12 N -0.315 5.315 13 C 0.169 3.831 14 C -0.336 4.336 15 C -0.059 4.059 16 C -0.302 4.302 17 C 0.150 3.850 18 C -0.510 4.510 19 H 0.101 0.899 20 C -0.178 4.178 21 N -0.430 5.430 22 Si 0.989 3.011 23 H -0.267 1.267 24 H -0.208 1.208 25 H -0.224 1.224 26 N -0.326 5.326 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.238 0.762 45 H 0.165 0.835 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.888 24.487 -7.453 25.612 hybrid contribution 0.996 -0.728 -0.794 1.467 sum 1.883 23.759 -8.248 25.221 Atomic orbital electron populations 1.21780 0.79866 1.03040 1.02139 1.47076 1.06387 1.04928 1.78799 1.21345 0.97676 0.83002 0.96806 1.21996 1.00596 0.97442 0.97501 1.21489 1.00666 0.96453 0.96669 1.21541 1.00150 0.96740 0.97184 1.21592 1.00974 0.97046 0.96040 1.21847 0.95859 0.92145 0.97384 1.58716 1.53303 1.06343 1.19983 1.15679 0.85239 0.79975 0.77910 1.90795 1.11187 1.85203 1.56536 1.42482 1.10311 1.03658 1.75013 1.17851 0.89028 0.83796 0.92397 1.21760 0.94468 1.00120 1.17277 1.20956 0.97841 0.92461 0.94686 1.21593 0.96281 0.98250 1.14085 1.18257 0.89798 0.88796 0.88111 1.20705 0.95367 0.96203 1.38752 0.89884 1.27747 0.96048 1.04866 0.89093 1.70643 1.41513 1.02981 1.27837 0.81867 0.69611 0.72318 0.77276 1.26675 1.20780 1.22371 1.65939 1.38727 0.99541 1.28417 0.92237 0.90616 0.91445 0.90693 0.89595 0.91174 0.92085 0.92040 0.91522 0.91707 0.92194 0.92290 0.91039 0.90985 0.95679 0.84698 0.84857 0.76162 0.83511 0.87646 0.87745 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.24 59.85 0.61 1.33 16 2 N -0.63 -8.20 2.87 -187.36 -0.54 -8.73 16 3 C 0.13 1.41 5.41 -4.04 -0.02 1.39 16 4 C -0.14 -1.28 5.54 -26.73 -0.15 -1.42 16 5 C -0.11 -0.87 5.21 -26.73 -0.14 -1.01 16 6 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 7 C -0.12 -0.81 5.47 -26.73 -0.15 -0.95 16 8 C 0.06 0.38 6.79 -3.83 -0.03 0.36 16 9 N -0.85 -5.26 9.62 -10.37 -0.10 -5.36 16 10 C 0.71 12.66 8.18 -86.92 -0.71 11.95 16 11 O -0.56 -11.55 12.58 5.31 0.07 -11.49 16 12 N -0.67 -13.01 5.29 -15.79 -0.08 -13.09 16 13 C 0.40 9.49 7.51 -154.99 -1.16 8.32 16 14 C -0.31 -7.24 8.89 -38.89 -0.35 -7.59 16 15 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 16 C -0.28 -6.82 9.83 -38.66 -0.38 -7.20 16 17 C 0.27 7.35 6.40 -85.00 -0.54 6.81 16 18 C -0.48 -13.22 9.57 -37.74 -0.36 -13.58 16 19 H 0.08 2.29 8.05 -52.48 -0.42 1.86 16 20 C 0.04 1.19 5.52 -17.35 -0.10 1.09 16 21 N -0.81 -22.15 13.65 55.55 0.76 -21.40 16 22 Si 1.15 27.97 25.61 -169.99 -4.35 23.61 16 23 H -0.33 -7.94 7.11 56.52 0.40 -7.54 16 24 H -0.28 -6.71 6.60 56.52 0.37 -6.34 16 25 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 26 N -0.60 -15.52 4.54 -10.26 -0.05 -15.56 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 29 H 0.07 0.65 6.31 -51.93 -0.33 0.32 16 30 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.09 1.05 7.42 -51.93 -0.39 0.67 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.34 1.59 9.08 -39.29 -0.36 1.23 16 43 H 0.34 1.66 8.99 -39.30 -0.35 1.31 16 44 H 0.40 6.95 6.52 -40.82 -0.27 6.68 16 45 H 0.15 3.37 5.17 -52.92 -0.27 3.10 16 46 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 47 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 48 H 0.28 7.43 8.72 -40.82 -0.36 7.07 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -32.28 386.99 -10.37 -42.65 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.90 Total: 6.23 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -4.01 Total: -2.69 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.01 Total: -64.15 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.35 Total: 23.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.28 -10.37 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883585882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.667 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds