Wall clock time and date at job start Sat Apr 11 2020 00:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99791 * 2 1 4 4 C 1.53001 * 109.47160 * 270.00219 * 3 2 1 5 5 C 1.53000 * 109.46765 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46765 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47132 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47634 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47367 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00293 * 180.02562 * 2 1 3 11 11 O 1.21568 * 120.00237 * 179.97438 * 10 2 1 12 12 N 1.34773 * 119.99662 * 0.02562 * 10 2 1 13 13 C 1.39250 * 119.99978 * 183.66124 * 12 10 2 14 14 C 1.39689 * 119.57221 * 339.03991 * 13 12 10 15 15 C 1.38640 * 119.49200 * 180.02562 * 14 13 12 16 16 C 1.38350 * 118.67474 * 359.74168 * 15 14 13 17 17 C 1.40577 * 119.13030 * 0.50004 * 16 15 14 18 18 C 1.41329 * 119.78722 * 179.77062 * 17 16 15 19 19 H 1.08004 * 120.00229 * 4.86671 * 18 17 16 20 20 C 1.40026 * 119.99925 * 184.86791 * 18 17 16 21 21 N 1.30741 * 120.00184 * 184.81816 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 4.81588 * 20 18 17 23 23 H 1.48501 * 109.47292 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47136 * 300.00002 * 22 20 18 25 25 H 1.48503 * 109.47143 * 59.99811 * 22 20 18 26 26 N 1.31900 * 119.57734 * 159.06345 * 13 12 10 27 27 H 1.08992 * 109.47159 * 269.99709 * 1 2 3 28 28 H 1.09000 * 109.47494 * 30.00044 * 1 2 3 29 29 H 1.09001 * 109.46870 * 149.99408 * 1 2 3 30 30 H 1.08997 * 109.47092 * 30.00389 * 3 2 1 31 31 H 1.08996 * 109.46868 * 149.99875 * 3 2 1 32 32 H 1.09004 * 109.47052 * 299.99755 * 4 3 2 33 33 H 1.08996 * 109.47512 * 60.00050 * 4 3 2 34 34 H 1.09004 * 109.46972 * 299.99603 * 5 4 3 35 35 H 1.08996 * 109.47229 * 59.99676 * 5 4 3 36 36 H 1.09004 * 109.47052 * 299.99554 * 6 5 4 37 37 H 1.08996 * 109.47512 * 59.99849 * 6 5 4 38 38 H 1.09007 * 109.47242 * 299.99616 * 7 6 5 39 39 H 1.08998 * 109.47598 * 59.99598 * 7 6 5 40 40 H 1.09004 * 109.46749 * 299.99619 * 8 7 6 41 41 H 1.08998 * 109.47007 * 59.99174 * 8 7 6 42 42 H 1.00901 * 110.99602 * 179.97438 * 9 8 7 43 43 H 1.00894 * 110.99588 * 303.94806 * 9 8 7 44 44 H 0.97001 * 120.00583 * 3.65442 * 12 10 2 45 45 H 1.08002 * 120.25160 * 359.97438 * 14 13 12 46 46 H 1.08003 * 120.66512 * 179.97438 * 15 14 13 47 47 H 1.08005 * 120.43675 * 180.24671 * 16 15 14 48 48 H 0.97001 * 120.00183 * 354.98460 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2179 3.0352 -1.4424 6 6 3.4734 3.4766 -2.8849 7 6 4.2395 4.8010 -2.8849 8 6 4.4945 5.2428 -4.3273 9 7 5.2306 6.5141 -4.3273 10 6 2.1389 -1.1672 -0.0005 11 8 3.3546 -1.1672 -0.0010 12 7 1.4651 -2.3343 -0.0016 13 6 2.1592 -3.5391 0.0749 14 6 3.5085 -3.5813 -0.2840 15 6 4.1978 -4.7818 -0.2077 16 6 3.5235 -5.9078 0.2300 17 6 2.1641 -5.8017 0.5719 18 6 1.4606 -6.9442 1.0160 19 1 1.9848 -7.8763 1.1671 20 6 0.0839 -6.8676 1.2601 21 7 -0.5495 -7.8962 1.7602 22 14 -0.8476 -5.2958 0.8713 23 1 -2.2807 -5.4708 1.2190 24 1 -0.2800 -4.1752 1.6634 25 1 -0.7226 -4.9916 -0.5768 26 7 1.5340 -4.6258 0.4848 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1498 1.1385 0.5138 32 1 3.0416 0.9509 -1.9564 33 1 1.5001 1.8409 -1.9563 34 1 2.6291 3.7951 -0.9284 35 1 4.1703 2.9045 -0.9287 36 1 4.0624 2.7167 -3.3985 37 1 2.5213 3.6073 -3.3990 38 1 3.6509 5.5613 -2.3712 39 1 5.1917 4.6701 -2.3709 40 1 5.0829 4.4828 -4.8414 41 1 3.5421 5.3739 -4.8409 42 1 5.4117 6.8271 -5.2693 43 1 4.7357 7.2184 -3.8008 44 1 0.4966 -2.3352 -0.0555 45 1 4.0107 -2.6858 -0.6191 46 1 5.2413 -4.8361 -0.4809 47 1 4.0338 -6.8568 0.3041 48 1 -0.0820 -8.7355 1.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883585882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:25:22 Heat of formation + Delta-G solvation = -34.197006 kcal Electronic energy + Delta-G solvation = -26364.014658 eV Core-core repulsion = 22645.167406 eV Total energy + Delta-G solvation = -3718.847252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94451 -40.20083 -37.94936 -36.94260 -36.28733 -35.49934 -34.83511 -32.98541 -32.02474 -30.99012 -28.34667 -27.53019 -26.93330 -24.77034 -23.67131 -23.15670 -22.02538 -21.92088 -21.07639 -20.23610 -19.46338 -18.35357 -17.14968 -17.04631 -16.98937 -16.78409 -16.44930 -16.12873 -15.78391 -15.62184 -15.28622 -15.04798 -14.77926 -14.66912 -14.33383 -14.17335 -13.91931 -13.76096 -13.71829 -13.50997 -13.22827 -12.79218 -12.75193 -12.60874 -12.34814 -12.20813 -11.89562 -11.77433 -11.69573 -11.65328 -11.62141 -11.34455 -11.14122 -10.83272 -10.40476 -9.79968 -9.70054 -9.62828 -9.31224 -9.12032 -6.81453 0.59462 0.74966 1.36687 1.55277 1.69312 2.00061 2.04284 2.46793 2.68166 2.72894 3.54519 3.56399 3.92957 3.97486 4.07128 4.11380 4.16030 4.26222 4.30318 4.37804 4.44089 4.58864 4.60501 4.63766 4.67647 4.70150 4.80640 4.82635 4.83574 4.87057 4.96638 5.01321 5.10263 5.17981 5.31169 5.34017 5.36406 5.44371 5.47109 5.50402 5.56554 5.64503 5.83432 5.90161 6.00880 6.22658 6.41537 6.57166 6.58128 6.74095 7.35500 7.50691 7.94966 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002341 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.016925 B =11959.535478 C =12781.853358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.622 5.622 3 C 0.130 3.870 4 C -0.127 4.127 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.113 4.113 8 C 0.058 3.942 9 N -0.865 5.865 10 C 0.704 3.296 11 O -0.594 6.594 12 N -0.665 5.665 13 C 0.391 3.609 14 C -0.309 4.309 15 C -0.028 4.028 16 C -0.294 4.294 17 C 0.258 3.742 18 C -0.509 4.509 19 H 0.068 0.932 20 C 0.013 3.987 21 N -0.829 5.829 22 Si 1.186 2.814 23 H -0.327 1.327 24 H -0.277 1.277 25 H -0.292 1.292 26 N -0.612 5.612 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.349 0.651 43 H 0.347 0.653 44 H 0.412 0.588 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.115 0.885 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 27.562 -8.901 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.359 5.359 3 C 0.008 3.992 4 C -0.166 4.166 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.073 4.073 9 N -0.395 5.395 10 C 0.406 3.594 11 O -0.473 6.473 12 N -0.314 5.314 13 C 0.159 3.841 14 C -0.334 4.334 15 C -0.052 4.052 16 C -0.317 4.317 17 C 0.133 3.867 18 C -0.541 4.541 19 H 0.086 0.914 20 C -0.203 4.203 21 N -0.452 5.452 22 Si 1.019 2.981 23 H -0.260 1.260 24 H -0.205 1.205 25 H -0.220 1.220 26 N -0.338 5.338 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.250 0.750 45 H 0.171 0.829 46 H 0.161 0.839 47 H 0.133 0.867 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.251 27.834 -8.143 29.001 hybrid contribution 1.317 -1.558 -0.641 2.138 sum 1.568 26.275 -8.784 27.749 Atomic orbital electron populations 1.22105 0.77330 1.04789 1.03460 1.47210 1.08008 1.03870 1.76773 1.21595 0.97292 0.82543 0.97726 1.21897 1.01006 0.97283 0.96431 1.21446 1.00233 0.96017 0.97022 1.21498 1.00407 0.96507 0.96862 1.21526 1.00341 0.97073 0.96171 1.21812 0.96111 0.92162 0.97175 1.58704 1.53526 1.06510 1.20803 1.15904 0.85023 0.80657 0.77841 1.90748 1.12744 1.85772 1.58075 1.42448 1.10829 1.02993 1.75170 1.18165 0.89684 0.84563 0.91680 1.22080 0.94561 1.00619 1.16113 1.21351 0.99504 0.91358 0.92970 1.21760 0.95706 0.99561 1.14641 1.18445 0.90929 0.89005 0.88293 1.20709 0.95906 0.96371 1.41163 0.91362 1.28591 0.96622 1.06364 0.88720 1.70667 1.41623 1.03267 1.29616 0.81462 0.69083 0.70368 0.77218 1.26047 1.20490 1.22016 1.65948 1.39220 0.99828 1.28808 0.91120 0.86942 0.91706 0.86927 0.91778 0.94356 0.90500 0.89973 0.92624 0.93123 0.91248 0.91252 0.92438 0.91948 0.94879 0.83844 0.84030 0.74967 0.82887 0.83945 0.86723 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 10.24 127.77 1.31 2.30 16 2 N -0.62 -14.46 2.87 -864.94 -2.49 -16.94 16 3 C 0.13 2.38 5.41 86.38 0.47 2.84 16 4 C -0.13 -2.09 5.54 30.59 0.17 -1.92 16 5 C -0.11 -1.41 5.21 30.59 0.16 -1.25 16 6 C -0.11 -1.44 5.21 30.59 0.16 -1.28 16 7 C -0.11 -1.35 5.47 30.59 0.17 -1.18 16 8 C 0.06 0.68 6.79 86.30 0.59 1.27 16 9 N -0.86 -9.43 9.62 -186.72 -1.80 -11.22 16 10 C 0.70 24.04 8.18 179.06 1.46 25.51 16 11 O -0.59 -24.01 12.58 -3.93 -0.05 -24.06 16 12 N -0.66 -24.97 5.29 -322.13 -1.70 -26.68 16 13 C 0.39 18.13 7.51 133.26 1.00 19.13 16 14 C -0.31 -13.98 8.89 22.72 0.20 -13.77 16 15 C -0.03 -1.20 10.15 22.39 0.23 -0.97 16 16 C -0.29 -14.22 9.83 22.87 0.22 -14.00 16 17 C 0.26 13.92 6.40 40.19 0.26 14.17 16 18 C -0.51 -28.87 9.57 23.46 0.22 -28.65 16 19 H 0.07 3.93 8.05 -2.91 -0.02 3.91 16 20 C 0.01 0.75 5.52 85.29 0.47 1.22 16 21 N -0.83 -46.42 13.65 21.84 0.30 -46.12 16 22 Si 1.19 56.56 25.61 68.60 1.76 58.32 16 23 H -0.33 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.28 -12.94 6.60 99.48 0.66 -12.29 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 N -0.61 -31.31 4.54 -186.36 -0.85 -32.16 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 29 H 0.06 1.05 6.31 -2.39 -0.02 1.04 16 30 H 0.11 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.06 1.48 7.42 -2.39 -0.02 1.47 16 32 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.35 2.79 9.08 -89.69 -0.81 1.98 16 43 H 0.35 2.81 8.99 -89.70 -0.81 2.00 16 44 H 0.41 13.47 6.52 -92.71 -0.60 12.87 16 45 H 0.15 6.83 5.17 -9.77 -0.05 6.78 16 46 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 47 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 48 H 0.28 15.24 8.72 -92.71 -0.81 14.43 16 Total: -1.00 -70.57 386.99 0.89 -69.68 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -1.37 Total: 25.78 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 7.09 Total: 3.41 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -6.53 Total: -133.12 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 56.56 SS G_CDS: 1.76 Total: 58.32 kcal Total: -70.57 0.89 -69.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883585882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.479 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds