Wall clock time and date at job start Sat Apr 11 2020 00:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00221 * 2 1 4 4 H 1.48507 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47285 * 300.00412 * 3 2 1 6 6 H 1.48499 * 109.47230 * 60.00324 * 3 2 1 7 7 C 1.38810 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00410 * 197.86198 * 7 2 1 9 9 N 1.36941 * 120.00141 * 17.85744 * 7 2 1 10 10 C 1.46846 * 120.38127 * 208.90548 * 9 7 2 11 11 C 1.53357 * 108.81165 * 236.88020 * 10 9 7 12 12 C 1.53184 * 108.76906 * 308.68769 * 11 10 9 13 13 C 1.52839 * 117.65891 * 269.97133 * 12 11 10 14 14 C 1.52815 * 117.71249 * 201.11210 * 12 11 10 15 15 H 1.08998 * 117.50179 * 215.13010 * 14 12 11 16 16 N 1.46495 * 117.50053 * 0.13884 * 14 12 11 17 17 C 1.34786 * 119.99834 * 204.99859 * 16 14 12 18 18 O 1.21282 * 119.99797 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99807 * 180.02562 * 17 16 14 20 20 C 1.50474 * 109.62775 * 60.96352 * 19 17 16 21 21 C 1.54068 * 112.50005 * 213.85587 * 20 19 17 22 22 C 1.54066 * 112.81508 * 318.28387 * 21 20 19 23 23 C 1.50481 * 112.50050 * 318.28386 * 22 21 20 24 24 C 1.54239 * 108.51250 * 94.15210 * 23 22 21 25 25 C 1.45538 * 112.41581 * 280.00354 * 24 23 22 26 26 C 1.53186 * 115.07437 * 55.44393 * 12 11 10 27 27 C 1.46844 * 120.38241 * 28.88253 * 9 7 2 28 28 H 0.97002 * 119.99654 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58049 * 117.09131 * 10 9 7 30 30 H 1.08995 * 109.58538 * 356.68279 * 10 9 7 31 31 H 1.08994 * 109.58857 * 188.90381 * 11 10 9 32 32 H 1.08999 * 109.58424 * 68.47449 * 11 10 9 33 33 H 1.08999 * 117.50678 * 144.81553 * 13 12 11 34 34 H 1.09001 * 117.50620 * 359.76056 * 13 12 11 35 35 H 0.97003 * 120.00439 * 25.00229 * 16 14 12 36 36 H 1.08996 * 109.78416 * 300.48222 * 19 17 16 37 37 H 1.08998 * 108.87516 * 334.63496 * 20 19 17 38 38 H 1.09002 * 108.87418 * 93.07999 * 20 19 17 39 39 H 1.08994 * 108.81184 * 197.42668 * 21 20 19 40 40 H 1.08993 * 108.81110 * 79.14164 * 21 20 19 41 41 H 1.08996 * 108.87673 * 197.50854 * 22 21 20 42 42 H 1.09002 * 108.88156 * 79.06003 * 22 21 20 43 43 H 1.08997 * 109.63219 * 213.86409 * 23 22 21 44 44 H 1.09004 * 109.62546 * 334.25721 * 23 22 21 45 45 H 1.09004 * 108.89019 * 40.76380 * 24 23 22 46 46 H 1.08996 * 108.89129 * 159.24704 * 24 23 22 47 47 H 1.08996 * 108.89766 * 182.69290 * 25 24 23 48 48 H 1.09004 * 108.89473 * 301.18927 * 25 24 23 49 49 H 1.08994 * 109.59081 * 64.34946 * 26 12 11 50 50 H 1.09003 * 109.58246 * 184.77411 * 26 12 11 51 51 H 1.09002 * 109.57780 * 242.91874 * 27 9 7 52 52 H 1.08993 * 109.57833 * 3.32137 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0511 -1.2249 0.2863 9 7 1.3749 -2.3594 -0.3647 10 6 1.8051 -3.6490 0.1904 11 6 2.1665 -4.5892 -0.9660 12 6 1.0058 -4.6103 -1.9654 13 6 -0.0885 -5.6573 -1.7598 14 6 0.9059 -5.8046 -2.9135 15 1 0.5384 -5.6170 -3.9224 16 7 1.9276 -6.8480 -2.7970 17 6 2.2159 -7.6301 -3.8563 18 8 1.6298 -7.4697 -4.9059 19 6 3.2665 -8.7039 -3.7363 20 6 2.8586 -9.6943 -2.6795 21 6 4.0651 -10.2687 -1.9126 22 6 5.2551 -10.6005 -2.8331 23 6 4.8243 -11.2543 -4.1182 24 6 4.6657 -10.1611 -5.1946 25 6 3.4017 -9.4487 -5.0802 26 6 0.5854 -3.2382 -2.5012 27 6 0.2554 -2.3248 -1.3144 28 1 -0.4850 0.8401 0.0004 29 1 0.9942 -4.0839 0.7747 30 1 2.6775 -3.5002 0.8266 31 1 2.3350 -5.5947 -0.5805 32 1 3.0685 -4.2295 -1.4611 33 1 -1.1107 -5.3729 -2.0095 34 1 0.0174 -6.3368 -0.9141 35 1 2.3966 -6.9761 -1.9577 36 1 4.2232 -8.2557 -3.4682 37 1 2.1932 -9.2004 -1.9713 38 1 2.3195 -10.5143 -3.1540 39 1 3.7542 -11.1781 -1.3985 40 1 4.3882 -9.5401 -1.1692 41 1 5.9324 -11.2721 -2.3056 42 1 5.7873 -9.6786 -3.0677 43 1 5.5801 -11.9730 -4.4347 44 1 3.8731 -11.7652 -3.9682 45 1 5.4835 -9.4472 -5.0958 46 1 4.7216 -10.6248 -6.1795 47 1 3.3288 -8.7264 -5.8931 48 1 2.5840 -10.1638 -5.1713 49 1 1.4021 -2.8057 -3.0792 50 1 -0.2952 -3.3473 -3.1342 51 1 -0.6514 -2.6776 -0.8231 52 1 0.1082 -1.3046 -1.6685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016543923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:24:31 Heat of formation + Delta-G solvation = -33.229944 kcal Electronic energy + Delta-G solvation = -27966.414313 eV Core-core repulsion = 24351.149340 eV Total energy + Delta-G solvation = -3615.264974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51134 -40.18402 -38.76697 -37.11577 -34.65036 -33.61457 -33.24478 -32.73334 -31.62487 -29.94171 -26.63403 -26.21055 -25.43503 -24.08095 -23.48821 -22.69167 -21.73269 -21.13928 -20.20068 -19.79437 -18.56020 -18.06572 -17.36651 -16.79642 -16.26485 -16.15268 -15.70907 -15.44422 -15.31727 -15.25929 -15.04530 -14.84164 -14.60500 -14.44060 -14.17253 -13.91816 -13.73525 -13.31693 -13.11838 -13.03816 -12.98216 -12.88591 -12.61096 -12.50191 -12.27805 -12.22292 -11.99771 -11.79269 -11.69769 -11.51668 -11.37444 -11.34281 -11.26903 -11.22403 -11.05745 -10.84733 -10.58841 -10.47710 -9.65461 -8.62443 -7.86358 -5.32430 1.45131 1.47813 1.57094 1.57766 2.07965 2.51359 2.94264 3.28638 3.59360 3.63988 3.66988 3.76743 3.80932 3.87396 3.98947 4.12954 4.15633 4.25955 4.28296 4.33716 4.47560 4.52434 4.53453 4.55358 4.63341 4.72738 4.83932 4.90941 4.93967 4.96959 5.02462 5.03955 5.08403 5.09437 5.12875 5.16702 5.26405 5.30590 5.31559 5.37806 5.38500 5.40662 5.43521 5.50152 5.53497 5.57621 5.62113 5.65981 5.77012 6.41312 6.54207 7.16353 7.24252 7.88904 8.39770 9.18872 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.002560 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.092277 B =10936.806904 C =11267.124654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.082 4.082 12 C -0.115 4.115 13 C -0.169 4.169 14 C 0.084 3.916 15 H 0.115 0.885 16 N -0.686 5.686 17 C 0.516 3.484 18 O -0.585 6.585 19 C -0.094 4.094 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.096 4.096 26 C -0.094 4.094 27 C 0.181 3.819 28 H 0.249 0.751 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.413 0.587 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.064 0.936 51 H -0.001 1.001 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -24.443 -5.334 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.121 4.121 12 C -0.117 4.117 13 C -0.207 4.207 14 C -0.022 4.022 15 H 0.133 0.867 16 N -0.336 5.336 17 C 0.305 3.695 18 O -0.465 6.465 19 C -0.115 4.115 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.133 4.133 26 C -0.133 4.133 27 C 0.055 3.945 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.083 0.917 51 H 0.018 0.982 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.694 -24.221 -6.052 26.436 hybrid contribution -0.031 1.480 0.336 1.518 sum 8.663 -22.740 -5.716 24.997 Atomic orbital electron populations 1.70187 1.06676 1.25723 1.55396 1.25781 0.95987 1.01486 1.01420 0.85269 0.78743 0.80101 0.76720 1.19054 1.21884 1.21883 1.19539 0.93084 0.86309 1.40152 0.91673 1.44245 1.37864 1.02454 1.48585 1.21008 0.97179 0.85919 0.93931 1.21444 0.95632 0.99557 0.95448 1.21800 0.99429 0.90389 1.00048 1.23593 0.95692 1.01314 1.00135 1.21599 0.93591 0.90821 0.96202 0.86707 1.45349 1.39553 1.33527 1.15194 1.21313 0.83452 0.82180 0.82599 1.90662 1.54099 1.71683 1.30037 1.21088 0.97599 0.94032 0.98767 1.21348 0.99006 0.97788 0.96597 1.21893 0.94064 1.01302 0.97738 1.21388 0.97694 1.00940 0.95962 1.21351 1.01943 0.97407 0.94700 1.20480 0.96924 0.98090 0.99849 1.20265 0.99101 0.98752 0.95231 1.21624 0.99791 0.94015 0.97902 1.20517 0.88135 0.97565 0.88267 0.94161 0.96438 0.92619 0.89633 0.92531 0.88362 0.87119 0.74917 0.86790 0.91555 0.91469 0.91163 0.91220 0.91406 0.92078 0.91169 0.91696 0.91798 0.91653 0.93169 0.92331 0.93442 0.91748 0.98245 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 11.23 21.65 0.24 -55.30 16 2 C -0.05 -2.88 4.88 84.86 0.41 -2.47 16 3 Si 0.96 45.06 29.59 68.60 2.03 47.09 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.26 -14.29 9.54 84.03 0.80 -13.49 16 8 H 0.07 3.49 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -30.26 2.94 -698.90 -2.05 -32.31 16 10 C 0.15 5.73 6.52 86.43 0.56 6.29 16 11 C -0.08 -2.50 5.37 30.78 0.17 -2.33 16 12 C -0.12 -3.62 1.94 -52.17 -0.10 -3.72 16 13 C -0.17 -4.51 9.86 30.55 0.30 -4.21 16 14 C 0.08 2.33 6.14 44.94 0.28 2.61 16 15 H 0.12 3.64 7.40 -2.39 -0.02 3.62 16 16 N -0.69 -15.43 4.96 -442.77 -2.19 -17.62 16 17 C 0.52 12.65 7.04 87.66 0.62 13.27 16 18 O -0.58 -19.53 15.17 -3.04 -0.05 -19.58 16 19 C -0.09 -1.56 2.21 -11.93 -0.03 -1.58 16 20 C -0.11 -1.40 4.83 30.14 0.15 -1.25 16 21 C -0.11 -1.06 5.85 31.32 0.18 -0.88 16 22 C -0.12 -1.14 5.31 30.14 0.16 -0.98 16 23 C -0.12 -1.18 5.60 30.20 0.17 -1.01 16 24 C -0.12 -1.48 5.26 28.74 0.15 -1.33 16 25 C -0.10 -1.67 4.29 28.74 0.12 -1.55 16 26 C -0.09 -3.62 5.83 30.77 0.18 -3.44 16 27 C 0.18 8.78 5.40 86.43 0.47 9.24 16 28 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 2.14 7.92 -2.39 -0.02 2.13 16 31 H 0.09 1.92 6.75 -2.39 -0.02 1.91 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.41 7.13 6.70 -92.71 -0.62 6.51 16 36 H 0.11 1.61 6.98 -2.39 -0.02 1.59 16 37 H 0.07 0.85 7.03 -2.39 -0.02 0.83 16 38 H 0.07 0.91 6.64 -2.39 -0.02 0.89 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.60 6.63 -2.39 -0.02 0.58 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.69 7.00 -2.39 -0.02 0.67 16 45 H 0.06 0.79 7.47 -2.38 -0.02 0.77 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.05 1.12 7.32 -2.39 -0.02 1.10 16 48 H 0.06 1.07 7.47 -2.38 -0.02 1.05 16 49 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 51 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 52 H 0.05 2.95 5.93 -2.39 -0.01 2.94 16 Total: -1.00 -67.99 386.18 2.84 -65.15 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.27 Total: 19.41 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.59 Total: -6.84 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.00 Total: -105.24 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.99 2.84 -65.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016543923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.924 kcal (2) G-P(sol) polarization free energy of solvation -67.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds