Wall clock time and date at job start Sat Apr 11 2020 00:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 112.90267 * 2 1 4 4 C 1.53780 * 113.61487 * 131.24238 * 2 1 3 5 5 C 1.53785 * 87.07886 * 89.12118 * 4 2 1 6 6 C 1.50701 * 113.61647 * 139.98251 * 5 4 2 7 7 O 1.21281 * 119.99856 * 1.52725 * 6 5 4 8 8 N 1.34772 * 119.99841 * 181.53027 * 6 5 4 9 9 C 1.46940 * 120.83540 * 0.02562 * 8 6 5 10 10 C 1.53144 * 109.01950 * 125.97045 * 9 8 6 11 11 C 1.53122 * 109.45829 * 54.11292 * 10 9 8 12 12 C 1.52839 * 109.35588 * 299.32435 * 11 10 9 13 13 H 1.08998 * 109.23450 * 302.45128 * 12 11 10 14 14 C 1.52764 * 110.24088 * 183.26685 * 12 11 10 15 15 N 1.46887 * 109.21760 * 292.47075 * 14 12 11 16 16 C 1.36942 * 120.76944 * 126.70093 * 15 14 12 17 17 H 1.07996 * 120.00403 * 332.77389 * 16 15 14 18 18 C 1.38813 * 119.99359 * 152.77203 * 16 15 14 19 19 N 1.31624 * 119.99696 * 159.74317 * 18 16 15 20 20 Si 1.86801 * 120.00511 * 339.73598 * 18 16 15 21 21 H 1.48499 * 109.46639 * 95.01172 * 20 18 16 22 22 H 1.48493 * 109.47439 * 215.01523 * 20 18 16 23 23 H 1.48506 * 109.47000 * 335.01718 * 20 18 16 24 24 C 1.46977 * 118.45592 * 306.68322 * 15 14 12 25 25 C 1.53094 * 108.59830 * 54.34658 * 24 15 14 26 26 C 1.47299 * 120.82881 * 179.97438 * 8 6 5 27 27 H 1.09004 * 110.05117 * 355.69404 * 26 8 6 28 28 C 1.53782 * 87.17270 * 25.38968 * 5 4 2 29 29 H 1.08993 * 109.47592 * 288.74965 * 1 2 3 30 30 H 1.08995 * 109.47314 * 48.75827 * 1 2 3 31 31 H 1.09007 * 109.46694 * 168.75262 * 1 2 3 32 32 H 1.09001 * 109.46985 * 191.24888 * 3 2 1 33 33 H 1.08995 * 109.46953 * 311.24437 * 3 2 1 34 34 H 1.09000 * 109.47378 * 71.25094 * 3 2 1 35 35 H 1.08998 * 113.61511 * 334.57930 * 4 2 1 36 36 H 1.08999 * 113.61873 * 203.67053 * 4 2 1 37 37 H 1.09000 * 113.61178 * 270.79917 * 5 4 2 38 38 H 1.09000 * 109.54642 * 245.83074 * 9 8 6 39 39 H 1.08995 * 109.54453 * 6.01730 * 9 8 6 40 40 H 1.09001 * 109.47476 * 174.10691 * 10 9 8 41 41 H 1.08995 * 109.47460 * 294.11762 * 10 9 8 42 42 H 1.09011 * 109.49084 * 59.28204 * 11 10 9 43 43 H 1.08994 * 109.49614 * 179.33021 * 11 10 9 44 44 H 1.09001 * 109.50834 * 52.39454 * 14 12 11 45 45 H 1.09001 * 109.51393 * 172.49626 * 14 12 11 46 46 H 0.97001 * 120.00140 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.61137 * 294.61583 * 24 15 14 48 48 H 1.09003 * 109.61571 * 174.08734 * 24 15 14 49 49 H 1.08994 * 109.45002 * 64.65892 * 25 24 15 50 50 H 1.09001 * 109.45085 * 184.60909 * 25 24 15 51 51 H 1.08994 * 113.61345 * 89.15465 * 28 5 4 52 52 H 1.08993 * 113.61650 * 220.06130 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1254 1.4094 0.0000 4 6 2.1460 -0.9289 1.0595 5 6 2.0930 -2.0425 0.0002 6 6 3.3080 -2.9341 0.0003 7 8 4.1940 -2.7517 0.8082 8 7 3.4099 -3.9342 -0.8974 9 6 2.3478 -4.1713 -1.8847 10 6 2.9626 -4.1784 -3.2872 11 6 4.1106 -5.1905 -3.3358 12 6 5.1837 -4.7883 -2.3246 13 1 5.5281 -3.7787 -2.5489 14 6 6.3761 -5.7392 -2.4129 15 7 5.9675 -7.0714 -1.9483 16 6 6.1730 -8.1786 -2.7275 17 1 6.2133 -8.0826 -3.8024 18 6 6.3297 -9.4244 -2.1355 19 7 6.1298 -10.5177 -2.8405 20 14 6.8243 -9.5492 -0.3385 21 1 5.6080 -9.6972 0.5005 22 1 7.7039 -10.7303 -0.1481 23 1 7.5542 -8.3190 0.0606 24 6 5.3334 -7.1884 -0.6275 25 6 4.1333 -6.2392 -0.5762 26 6 4.5895 -4.8162 -0.9141 27 1 5.3218 -4.4749 -0.1823 28 6 2.1449 -0.9307 -1.0610 29 1 -0.3634 0.3303 0.9730 30 1 -0.3634 0.6774 -0.7727 31 1 -0.3633 -1.0080 -0.2005 32 1 3.1953 1.3518 -0.2005 33 1 1.6427 2.0077 -0.7727 34 1 1.9626 1.8727 0.9731 35 1 1.4945 -1.1085 1.9146 36 1 3.1590 -0.6496 1.3492 37 1 1.1575 -2.6019 0.0012 38 1 1.8758 -5.1340 -1.6885 39 1 1.6025 -3.3790 -1.8158 40 1 2.2016 -4.4569 -4.0162 41 1 3.3442 -3.1847 -3.5218 42 1 3.7317 -6.1824 -3.0887 43 1 4.5410 -5.2047 -4.3371 44 1 6.7155 -5.8023 -3.4467 45 1 7.1861 -5.3666 -1.7858 46 1 6.2396 -11.3883 -2.4270 47 1 6.0494 -6.9153 0.1476 48 1 4.9961 -8.2134 -0.4731 49 1 3.3844 -6.5615 -1.2995 50 1 3.7015 -6.2538 0.4245 51 1 3.1575 -0.6519 -1.3522 52 1 1.4925 -1.1117 -1.9152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021577951.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:25:30 Heat of formation + Delta-G solvation = -1.499244 kcal Electronic energy + Delta-G solvation = -29254.849736 eV Core-core repulsion = 25640.960709 eV Total energy + Delta-G solvation = -3613.889027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98763 -39.52457 -37.64505 -35.76769 -32.92690 -32.40194 -31.27115 -30.32893 -30.05638 -27.74104 -26.03318 -25.73002 -25.50198 -23.51997 -22.58653 -22.18488 -21.36686 -19.07227 -18.49382 -17.93169 -17.27533 -16.73706 -16.04086 -15.48894 -15.22411 -14.85650 -14.69279 -14.32279 -14.15729 -13.98068 -13.83690 -13.51057 -13.22895 -13.07555 -12.90551 -12.88942 -12.54850 -12.43779 -12.26561 -12.12693 -11.96069 -11.83788 -11.64727 -11.31552 -11.12544 -11.03980 -10.80169 -10.72710 -10.55231 -10.44666 -10.35411 -10.26604 -10.06257 -10.03514 -9.66125 -9.46110 -9.39705 -8.62794 -8.34981 -6.97508 -5.94804 -3.30401 2.71738 3.10567 3.33472 3.50325 3.53773 4.15013 4.28566 4.38363 4.49297 4.53695 4.70877 4.84937 4.95556 4.99798 5.07324 5.12861 5.16686 5.24650 5.33082 5.33928 5.36746 5.42674 5.45904 5.53785 5.57841 5.60840 5.62226 5.65263 5.71684 5.77228 5.83963 5.87764 5.91052 5.99158 6.05093 6.09988 6.13674 6.19587 6.25171 6.28919 6.36849 6.39315 6.60534 6.64003 6.67552 6.75348 6.80624 6.97088 7.61219 7.95447 8.32096 8.32636 8.93477 9.72225 10.10460 11.21085 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.003354 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.090048 B = 8347.026020 C = 8748.829139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.108 4.108 5 C -0.136 4.136 6 C 0.522 3.478 7 O -0.547 6.547 8 N -0.604 5.604 9 C 0.107 3.893 10 C -0.132 4.132 11 C -0.108 4.108 12 C -0.107 4.107 13 H 0.061 0.939 14 C 0.154 3.846 15 N -0.603 5.603 16 C -0.256 4.256 17 H 0.086 0.914 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.880 3.120 21 H -0.290 1.290 22 H -0.304 1.304 23 H -0.269 1.269 24 C 0.129 3.871 25 C -0.142 4.142 26 C 0.153 3.847 27 H 0.094 0.906 28 C -0.112 4.112 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.262 0.738 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.085 0.915 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 20.909 2.664 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.192 4.192 4 C -0.145 4.145 5 C -0.157 4.157 6 C 0.310 3.690 7 O -0.425 6.425 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.171 4.171 11 C -0.145 4.145 12 C -0.128 4.128 13 H 0.079 0.921 14 C 0.028 3.972 15 N -0.326 5.326 16 C -0.384 4.384 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.711 3.289 21 H -0.218 1.218 22 H -0.232 1.232 23 H -0.194 1.194 24 C 0.003 3.997 25 C -0.182 4.182 26 C 0.051 3.949 27 H 0.112 0.888 28 C -0.150 4.150 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.072 0.928 51 H 0.103 0.897 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.133 20.816 3.062 24.287 hybrid contribution 0.180 -0.383 0.959 1.048 sum -11.953 20.432 4.021 24.011 Atomic orbital electron populations 1.21603 0.93046 1.01938 1.01949 1.21831 0.95546 0.94724 0.96984 1.21713 1.00651 0.95163 1.01665 1.22950 1.02293 0.93535 0.95765 1.22707 0.97505 0.95179 1.00318 1.20458 0.88025 0.80265 0.80224 1.90664 1.41729 1.71041 1.39063 1.48479 1.21268 1.31138 1.32682 1.21706 0.89620 1.01734 0.88507 1.21928 0.99068 1.00324 0.95739 1.21474 0.94779 0.99485 0.98799 1.21771 0.97441 0.99515 0.94088 0.92091 1.20842 0.92475 0.84967 0.98938 1.44345 1.68002 1.03292 1.16998 1.18893 1.44529 0.84204 0.90753 0.89624 1.25262 0.99571 0.95342 0.97392 1.69830 1.51247 0.97383 1.36798 0.86978 0.78347 0.76887 0.86680 1.21774 1.23229 1.19378 1.21295 0.92178 0.98173 0.88036 1.22413 1.00430 0.94755 1.00585 1.21288 0.86663 0.89174 0.97744 0.88757 1.23041 1.01750 0.94210 0.95981 0.92269 0.92324 0.92382 0.92417 0.92646 0.92491 0.91204 0.88707 0.87296 0.91317 0.90316 0.91112 0.92126 0.89997 0.92018 0.91522 0.95834 0.92814 0.95486 0.90817 0.91049 0.92834 0.89665 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.07 37.16 0.34 -0.48 16 2 C -0.09 -0.71 1.39 -153.61 -0.21 -0.93 16 3 C -0.13 -0.99 9.20 37.16 0.34 -0.65 16 4 C -0.11 -1.07 6.55 -25.92 -0.17 -1.24 16 5 C -0.14 -1.40 2.37 -90.96 -0.22 -1.61 16 6 C 0.52 7.55 7.23 -10.99 -0.08 7.47 16 7 O -0.55 -10.03 15.36 5.56 0.09 -9.94 16 8 N -0.60 -8.51 2.66 -164.91 -0.44 -8.95 16 9 C 0.11 1.21 5.82 -3.73 -0.02 1.19 16 10 C -0.13 -1.51 6.08 -26.59 -0.16 -1.68 16 11 C -0.11 -1.62 4.86 -26.75 -0.13 -1.75 16 12 C -0.11 -1.75 2.44 -90.78 -0.22 -1.97 16 13 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 14 C 0.15 3.00 5.90 -3.95 -0.02 2.98 16 15 N -0.60 -13.94 2.43 -172.63 -0.42 -14.36 16 16 C -0.26 -6.95 10.05 -15.06 -0.15 -7.10 16 17 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 18 C 0.02 0.66 5.25 -17.43 -0.09 0.57 16 19 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 20 Si 0.88 22.49 24.36 -169.99 -4.14 18.35 16 21 H -0.29 -7.19 6.70 56.52 0.38 -6.82 16 22 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 23 H -0.27 -6.79 6.47 56.52 0.37 -6.43 16 24 C 0.13 2.83 4.19 -3.73 -0.02 2.82 16 25 C -0.14 -2.57 5.03 -26.58 -0.13 -2.71 16 26 C 0.15 2.58 2.65 -67.35 -0.18 2.40 16 27 H 0.09 1.79 7.05 -51.93 -0.37 1.42 16 28 C -0.11 -0.97 6.28 -25.83 -0.16 -1.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 7.34 -51.93 -0.38 -0.03 16 32 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.09 1.12 7.41 -51.93 -0.38 0.74 16 37 H 0.11 0.96 7.07 -51.93 -0.37 0.59 16 38 H 0.07 0.80 7.26 -51.93 -0.38 0.42 16 39 H 0.08 0.69 5.40 -51.93 -0.28 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.45 6.17 -51.92 -0.32 1.13 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.03 0.60 7.05 -51.93 -0.37 0.24 16 48 H 0.07 1.76 4.45 -51.93 -0.23 1.53 16 49 H 0.07 1.29 5.34 -51.93 -0.28 1.01 16 50 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 52 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -31.34 375.53 -9.03 -40.37 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -9.26 Total: -0.46 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.29 Total: -3.82 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.08 Total: -50.16 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.34 -9.03 -40.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021577951.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.871 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds