Wall clock time and date at job start Sat Apr 11 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 112.90331 * 2 1 4 4 C 1.53782 * 113.61255 * 131.25262 * 2 1 3 5 5 C 1.53774 * 87.08076 * 89.11900 * 4 2 1 6 6 C 1.50702 * 113.61452 * 139.98187 * 5 4 2 7 7 O 1.21277 * 120.00105 * 1.52031 * 6 5 4 8 8 N 1.34781 * 119.99979 * 181.52891 * 6 5 4 9 9 C 1.47066 * 120.84410 * 355.36495 * 8 6 5 10 10 C 1.53133 * 109.04417 * 126.59611 * 9 8 6 11 11 C 1.53137 * 109.61470 * 54.00158 * 10 9 8 12 12 C 1.52819 * 109.27067 * 299.14868 * 11 10 9 13 13 H 1.08998 * 109.47444 * 301.99809 * 12 11 10 14 14 C 1.53060 * 110.34335 * 181.44932 * 12 11 10 15 15 N 1.47067 * 108.33577 * 184.55912 * 14 12 11 16 16 C 1.36933 * 120.46989 * 233.31903 * 15 14 12 17 17 H 1.08001 * 120.00246 * 25.05593 * 16 15 14 18 18 C 1.38819 * 119.99985 * 205.05761 * 16 15 14 19 19 N 1.31622 * 119.99599 * 33.39298 * 18 16 15 20 20 Si 1.86796 * 119.99950 * 213.39526 * 18 16 15 21 21 H 1.48509 * 109.46936 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47115 * 299.99478 * 20 18 16 23 23 H 1.48491 * 109.47164 * 60.00076 * 20 18 16 24 24 C 1.46863 * 119.05733 * 53.59026 * 15 14 12 25 25 C 1.53773 * 108.85778 * 307.02411 * 24 15 14 26 26 C 1.46713 * 120.84238 * 175.38994 * 8 6 5 27 27 H 1.09002 * 109.52654 * 114.76952 * 26 8 6 28 28 C 1.53782 * 87.17461 * 25.38905 * 5 4 2 29 29 H 1.08997 * 109.47687 * 288.74588 * 1 2 3 30 30 H 1.09004 * 109.47625 * 48.75030 * 1 2 3 31 31 H 1.09007 * 109.47090 * 168.74880 * 1 2 3 32 32 H 1.09005 * 109.46773 * 191.24684 * 3 2 1 33 33 H 1.08994 * 109.47243 * 311.25188 * 3 2 1 34 34 H 1.09002 * 109.47167 * 71.25114 * 3 2 1 35 35 H 1.09000 * 113.61314 * 334.56700 * 4 2 1 36 36 H 1.08998 * 113.68511 * 203.67722 * 4 2 1 37 37 H 1.09001 * 113.61503 * 270.79340 * 5 4 2 38 38 H 1.08996 * 109.54252 * 246.46571 * 9 8 6 39 39 H 1.09005 * 109.54281 * 6.73079 * 9 8 6 40 40 H 1.08997 * 109.44613 * 174.04365 * 10 9 8 41 41 H 1.08998 * 109.44638 * 293.98481 * 10 9 8 42 42 H 1.08999 * 109.50300 * 179.21285 * 11 10 9 43 43 H 1.09000 * 109.50744 * 59.08743 * 11 10 9 44 44 H 1.09009 * 109.68861 * 64.85008 * 14 12 11 45 45 H 1.08997 * 109.72494 * 304.29257 * 14 12 11 46 46 H 0.96997 * 120.00188 * 5.71123 * 19 18 16 47 47 H 1.09002 * 109.52947 * 66.96642 * 24 15 14 48 48 H 1.09002 * 109.52970 * 187.18721 * 24 15 14 49 49 H 1.09005 * 109.70377 * 294.46741 * 25 24 15 50 50 H 1.08996 * 109.57353 * 174.15149 * 25 24 15 51 51 H 1.08998 * 113.61603 * 89.16126 * 28 5 4 52 52 H 1.09005 * 113.60914 * 220.06130 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1254 1.4094 0.0000 4 6 2.1460 -0.9291 1.0593 5 6 2.0930 -2.0425 0.0000 6 6 3.3079 -2.9341 0.0000 7 8 4.1939 -2.7518 0.8078 8 7 3.4099 -3.9342 -0.8978 9 6 2.3039 -4.2362 -1.8189 10 6 2.8356 -4.2366 -3.2550 11 6 4.0279 -5.1917 -3.3615 12 6 5.1388 -4.7181 -2.4251 13 1 5.4252 -3.6995 -2.6870 14 6 6.3581 -5.6363 -2.5388 15 7 7.3538 -5.2085 -1.5445 16 6 8.6402 -4.9328 -1.9243 17 1 8.8507 -4.6316 -2.9398 18 6 9.6738 -5.0407 -1.0039 19 7 9.6215 -5.9565 -0.0600 20 14 11.1387 -3.8860 -1.1050 21 1 12.0970 -4.2057 -0.0165 22 1 11.8099 -4.0519 -2.4193 23 1 10.6741 -2.4831 -0.9600 24 6 6.9502 -5.0869 -0.1377 25 6 5.7053 -4.1882 -0.0536 26 6 4.6268 -4.7494 -0.9806 27 1 4.3971 -5.7767 -0.6977 28 6 2.1448 -0.9306 -1.0611 29 1 -0.3634 0.3302 0.9731 30 1 -0.3634 0.6776 -0.7726 31 1 -0.3634 -1.0080 -0.2005 32 1 3.1953 1.3517 -0.2004 33 1 1.6427 2.0078 -0.7726 34 1 1.9626 1.8726 0.9731 35 1 1.4944 -1.1087 1.9145 36 1 3.1590 -0.6508 1.3500 37 1 1.1575 -2.6019 0.0009 38 1 1.8904 -5.2167 -1.5830 39 1 1.5277 -3.4777 -1.7178 40 1 2.0476 -4.5628 -3.9336 41 1 3.1529 -3.2293 -3.5247 42 1 4.3961 -5.2011 -4.3874 43 1 3.7158 -6.1966 -3.0769 44 1 6.7828 -5.5606 -3.5399 45 1 6.0622 -6.6668 -2.3424 46 1 8.9037 -6.6088 -0.0563 47 1 6.7183 -6.0743 0.2615 48 1 7.7624 -4.6418 0.4372 49 1 5.9617 -3.1751 -0.3634 50 1 5.3341 -4.1735 0.9712 51 1 3.1575 -0.6519 -1.3523 52 1 1.4923 -1.1116 -1.9153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021577952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:25:33 Heat of formation + Delta-G solvation = -14.902319 kcal Electronic energy + Delta-G solvation = -29358.375904 eV Core-core repulsion = 25743.905676 eV Total energy + Delta-G solvation = -3614.470228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10780 -40.44659 -38.70974 -37.55408 -34.72514 -34.05875 -32.36295 -31.28900 -31.00062 -28.25010 -27.17349 -26.70905 -26.62141 -24.86717 -24.03587 -23.56814 -21.59308 -21.16983 -19.77485 -19.33911 -19.15945 -17.91645 -17.19189 -16.58802 -16.19605 -15.92410 -15.79194 -15.54599 -15.51325 -15.35152 -15.24303 -14.90079 -14.40794 -14.20818 -13.83228 -13.77061 -13.71514 -13.64690 -13.51612 -13.31875 -12.79664 -12.69299 -12.62205 -12.43855 -12.33692 -12.23633 -12.02581 -12.00017 -11.95030 -11.80799 -11.75055 -11.61081 -11.55486 -11.19250 -11.15340 -11.01772 -10.42634 -10.02035 -9.53397 -8.97467 -8.36569 -5.37435 1.51300 1.60165 1.64408 1.79143 2.00983 2.60203 3.09297 3.43006 3.48241 3.48567 3.61631 3.71376 3.75787 3.78912 3.89018 4.07025 4.11066 4.19574 4.24235 4.36307 4.40607 4.45380 4.50543 4.56339 4.68475 4.71162 4.75724 4.76770 4.80078 4.82455 4.85683 4.88722 4.90219 4.95277 5.03862 5.05871 5.09844 5.13315 5.17914 5.19874 5.22680 5.26427 5.31865 5.35330 5.45634 5.51375 5.62022 5.66747 5.79429 6.30882 6.53486 6.99308 7.27936 7.73532 8.18818 8.89838 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.003874 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.311034 B = 7225.968079 C = 8197.468087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.127 4.127 6 C 0.509 3.491 7 O -0.579 6.579 8 N -0.606 5.606 9 C 0.102 3.898 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.098 4.098 13 H 0.045 0.955 14 C 0.153 3.847 15 N -0.617 5.617 16 C -0.368 4.368 17 H 0.050 0.950 18 C -0.070 4.070 19 N -0.928 5.928 20 Si 1.104 2.896 21 H -0.289 1.289 22 H -0.269 1.269 23 H -0.288 1.288 24 C 0.156 3.844 25 C -0.098 4.098 26 C 0.164 3.836 27 H 0.064 0.936 28 C -0.108 4.108 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.142 0.858 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.252 0.748 47 H 0.002 0.998 48 H 0.035 0.965 49 H 0.032 0.968 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.177 9.228 -5.499 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.195 4.195 4 C -0.155 4.155 5 C -0.148 4.148 6 C 0.299 3.701 7 O -0.459 6.459 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.119 4.119 13 H 0.063 0.937 14 C 0.028 3.972 15 N -0.341 5.341 16 C -0.497 4.497 17 H 0.068 0.932 18 C -0.268 4.268 19 N -0.568 5.568 20 Si 0.929 3.071 21 H -0.215 1.215 22 H -0.194 1.194 23 H -0.215 1.215 24 C 0.030 3.970 25 C -0.137 4.137 26 C 0.061 3.939 27 H 0.082 0.918 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.020 0.980 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.093 0.907 51 H 0.076 0.924 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.302 9.751 -4.370 26.547 hybrid contribution -0.316 -0.850 -0.385 0.985 sum -24.618 8.901 -4.755 26.606 Atomic orbital electron populations 1.21605 0.90782 1.03028 1.02686 1.21807 0.96961 0.93998 0.95084 1.21735 0.99739 0.95643 1.02366 1.22949 1.00995 0.94697 0.96836 1.22853 0.96429 0.94572 1.00956 1.21360 0.88899 0.80303 0.79526 1.90722 1.42738 1.71629 1.40785 1.48348 1.16722 1.32586 1.36174 1.22100 0.88098 1.03321 0.88407 1.21886 0.98168 0.99733 0.96504 1.21504 0.94418 0.99844 0.98881 1.21828 0.95971 0.99251 0.94810 0.93669 1.21040 0.88953 0.94711 0.92500 1.44438 1.07223 1.78865 1.03613 1.20130 0.85344 1.44936 0.99310 0.93203 1.27068 1.02913 1.00130 0.96680 1.70906 1.32587 1.13757 1.39580 0.83017 0.73122 0.74433 0.76548 1.21473 1.19429 1.21505 1.21009 0.95195 0.95131 0.85670 1.22292 0.94334 0.97172 0.99946 1.20922 0.84039 0.93592 0.95376 0.91846 1.23001 1.01053 0.93697 0.96782 0.91900 0.91164 0.91151 0.94330 0.91130 0.92166 0.90241 0.92104 0.84048 0.89891 0.86864 0.87147 0.92231 0.90900 0.90912 0.92835 0.96160 0.93897 0.97959 0.94607 0.94928 0.90720 0.92364 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.07 71.98 0.65 -0.53 16 2 C -0.08 -1.19 1.39 -51.60 -0.07 -1.26 16 3 C -0.14 -2.20 9.20 71.98 0.66 -1.54 16 4 C -0.12 -2.44 6.55 31.12 0.20 -2.23 16 5 C -0.13 -2.48 2.38 -11.01 -0.03 -2.51 16 6 C 0.51 15.43 7.11 87.66 0.62 16.05 16 7 O -0.58 -23.64 11.56 -3.02 -0.03 -23.67 16 8 N -0.61 -16.84 2.97 -795.33 -2.36 -19.20 16 9 C 0.10 1.68 6.33 86.32 0.55 2.22 16 10 C -0.12 -2.02 6.07 30.68 0.19 -1.84 16 11 C -0.11 -2.51 5.24 30.58 0.16 -2.35 16 12 C -0.10 -3.39 2.21 -10.74 -0.02 -3.42 16 13 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 14 C 0.15 6.65 5.86 86.29 0.51 7.16 16 15 N -0.62 -33.51 2.87 -698.00 -2.01 -35.52 16 16 C -0.37 -22.05 9.41 84.04 0.79 -21.26 16 17 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 18 C -0.07 -4.26 4.43 84.86 0.38 -3.88 16 19 N -0.93 -59.83 12.48 21.65 0.27 -59.56 16 20 Si 1.10 54.28 30.03 68.60 2.06 56.34 16 21 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 C 0.16 8.39 4.91 86.57 0.43 8.82 16 25 C -0.10 -4.53 3.84 30.82 0.12 -4.41 16 26 C 0.16 5.91 2.64 45.01 0.12 6.02 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 C -0.11 -1.81 6.46 31.18 0.20 -1.61 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.51 7.34 -2.38 -0.02 0.49 16 32 H 0.04 0.76 7.95 -2.38 -0.02 0.74 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 36 H 0.06 1.71 7.41 -2.39 -0.02 1.70 16 37 H 0.14 1.80 6.88 -2.39 -0.02 1.78 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.18 5.63 -2.38 -0.01 1.17 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 2.31 7.92 -2.38 -0.02 2.29 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.25 16.61 7.38 -92.71 -0.68 15.93 16 47 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 48 H 0.04 2.18 6.37 -2.39 -0.02 2.17 16 49 H 0.03 1.66 7.45 -2.38 -0.02 1.64 16 50 H 0.07 3.56 6.12 -2.39 -0.01 3.54 16 51 H 0.06 1.33 7.92 -2.39 -0.02 1.31 16 52 H 0.10 1.13 8.06 -2.38 -0.02 1.11 16 Total: -1.00 -78.03 382.58 4.33 -73.70 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.95 Total: 14.46 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.45 Total: -6.55 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.10 Total: -114.27 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.03 Total: -23.67 kcal Atomic # 14 Polarization: 54.28 SS G_CDS: 2.06 Total: 56.34 kcal Total: -78.03 4.33 -73.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021577952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.801 kcal (2) G-P(sol) polarization free energy of solvation -78.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds