Wall clock time and date at job start Sat Apr 11 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48493 * 109.47303 * 240.00518 * 3 2 1 5 5 H 1.48499 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46812 * 120.00293 * 3 2 1 7 7 C 1.37875 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99353 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47066 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47198 * 300.00533 * 11 10 9 13 13 N 1.46894 * 109.47215 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00131 * 154.99842 * 13 12 11 15 15 C 1.53125 * 109.52206 * 154.99900 * 14 13 12 16 16 C 1.53040 * 109.27696 * 177.61989 * 15 14 13 17 17 N 1.46844 * 109.52547 * 300.81959 * 16 15 14 18 18 C 1.46894 * 111.00197 * 185.83737 * 17 16 15 19 19 C 1.53002 * 109.47340 * 169.99934 * 18 17 16 20 20 C 1.53781 * 113.61609 * 175.00028 * 19 18 17 21 21 C 1.53781 * 87.08070 * 139.98229 * 20 19 18 22 22 C 1.53786 * 87.17350 * 334.52830 * 21 20 19 23 23 C 1.46852 * 111.19962 * 61.74096 * 17 16 15 24 24 C 1.53036 * 109.52095 * 298.26186 * 23 17 16 25 25 C 1.52995 * 109.47434 * 59.99512 * 12 11 10 26 26 C 1.52996 * 109.46873 * 299.99769 * 9 7 2 27 27 H 0.96992 * 120.00027 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46846 * 59.99478 * 9 7 2 29 29 H 1.09002 * 109.46916 * 59.99855 * 10 9 7 30 30 H 1.08992 * 109.47158 * 299.99997 * 10 9 7 31 31 H 1.09000 * 109.47326 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.47107 * 60.00296 * 11 10 9 33 33 H 1.09002 * 109.46898 * 299.99891 * 12 11 10 34 34 H 1.00904 * 111.00180 * 278.95026 * 13 12 11 35 35 H 1.08996 * 109.52789 * 34.86943 * 14 13 12 36 36 H 1.08995 * 109.50628 * 57.68093 * 15 14 13 37 37 H 1.08995 * 109.53572 * 297.57718 * 15 14 13 38 38 H 1.08996 * 109.46229 * 180.79890 * 16 15 14 39 39 H 1.09006 * 109.45009 * 60.83244 * 16 15 14 40 40 H 1.08997 * 109.47139 * 49.99862 * 18 17 16 41 41 H 1.09006 * 109.47367 * 290.00292 * 18 17 16 42 42 H 1.08996 * 112.84723 * 43.80848 * 19 18 17 43 43 H 1.08999 * 113.61181 * 25.43284 * 20 19 18 44 44 H 1.08998 * 113.61680 * 254.52836 * 20 19 18 45 45 H 1.09002 * 113.61445 * 89.11830 * 21 20 19 46 46 H 1.09002 * 113.61408 * 219.93560 * 21 20 19 47 47 H 1.08992 * 113.61675 * 140.02412 * 22 21 20 48 48 H 1.09000 * 113.60973 * 270.92699 * 22 21 20 49 49 H 1.09001 * 109.46124 * 58.27245 * 23 17 16 50 50 H 1.08994 * 109.46429 * 178.24283 * 23 17 16 51 51 H 1.09001 * 109.50536 * 299.23094 * 24 23 17 52 52 H 1.09005 * 109.53525 * 179.13954 * 24 23 17 53 53 H 1.09002 * 109.46768 * 60.00300 * 25 12 11 54 54 H 1.09004 * 109.47386 * 180.02562 * 25 12 11 55 55 H 1.09002 * 109.47210 * 300.00250 * 26 9 7 56 56 H 1.09000 * 109.47048 * 60.00036 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 6 0.6021 -5.0684 1.2490 13 7 -0.1319 -6.3408 1.2499 14 6 -0.4971 -6.7369 2.6165 15 6 -1.7259 -7.6495 2.5737 16 6 -2.0656 -8.1066 3.9942 17 7 -0.9197 -8.8252 4.5657 18 6 -1.2577 -9.3984 5.8753 19 6 -0.1384 -10.3400 6.3242 20 6 -0.3368 -10.9009 7.7423 21 6 0.1823 -12.2427 7.1993 22 6 -0.3054 -11.7842 5.8148 23 6 0.2593 -7.9549 4.6607 24 6 0.6684 -7.4933 3.2601 25 6 -0.3921 -3.9055 1.2503 26 6 0.3720 -2.5805 1.2490 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 2.8727 -3.6047 0.8877 30 1 2.8713 -3.6039 -0.8922 31 1 2.1887 -5.8156 -0.0016 32 1 0.8528 -5.0448 -0.8905 33 1 1.2297 -5.0107 2.1383 34 1 -0.9478 -6.2881 0.6585 35 1 -0.7238 -5.8481 3.2052 36 1 -1.5117 -8.5195 1.9530 37 1 -2.5712 -7.1032 2.1553 38 1 -2.9315 -8.7679 3.9656 39 1 -2.2931 -7.2369 4.6107 40 1 -2.1916 -9.9550 5.7982 41 1 -1.3720 -8.5962 6.6045 42 1 0.8558 -9.9275 6.1531 43 1 -1.3798 -10.9316 8.0577 44 1 0.3183 -10.4482 8.4865 45 1 1.2648 -12.3517 7.2669 46 1 -0.3552 -13.1081 7.5871 47 1 0.3751 -12.0442 5.0040 48 1 -1.3397 -12.0561 5.6042 49 1 0.0208 -7.0860 5.2742 50 1 1.0819 -8.5061 5.1162 51 1 0.9204 -8.3608 2.6502 52 1 1.5342 -6.8350 3.3317 53 1 -1.0198 -3.9631 0.3609 54 1 -1.0176 -3.9631 2.1411 55 1 0.9990 -2.5229 2.1388 56 1 -0.3363 -1.7520 1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334665.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:03 Heat of formation + Delta-G solvation = -22.072286 kcal Electronic energy + Delta-G solvation = -27875.661235 eV Core-core repulsion = 24396.713189 eV Total energy + Delta-G solvation = -3478.948047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71320 -39.81442 -38.79165 -36.37088 -34.52925 -32.56349 -31.84429 -31.31934 -29.87466 -28.04495 -26.40073 -26.11528 -24.58803 -23.89327 -23.22357 -22.46036 -21.87547 -20.78537 -20.32159 -20.10040 -18.39224 -17.27615 -16.77550 -16.43447 -16.26107 -16.18464 -16.04088 -15.56312 -15.06529 -14.91121 -14.77563 -14.60590 -14.34770 -14.17019 -13.93366 -13.76820 -13.43836 -13.24709 -13.15027 -12.94521 -12.88976 -12.74589 -12.59372 -12.40473 -12.25269 -12.16518 -12.09896 -12.04575 -11.81061 -11.71734 -11.58508 -11.30983 -11.18390 -11.12968 -11.00510 -10.98443 -10.76598 -10.57171 -10.37485 -9.24591 -9.21396 -8.07332 -6.21528 1.39950 1.41059 1.48645 2.42822 2.89748 3.16234 3.19661 3.72877 3.80111 3.84815 3.91627 3.97140 4.00363 4.08865 4.13452 4.23225 4.28502 4.39742 4.43982 4.48118 4.56688 4.58694 4.59917 4.66960 4.68245 4.72205 4.78527 4.81907 4.88895 4.90287 4.92464 4.94371 4.96047 5.00801 5.08194 5.11858 5.13493 5.14023 5.22108 5.24803 5.25887 5.34343 5.38899 5.45456 5.46239 5.47123 5.61181 5.67370 5.68199 6.03936 6.15144 6.19547 6.19953 6.22385 6.41983 6.55675 6.91208 7.46180 8.95858 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.002115 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.469939 B =13232.527482 C =13335.516815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.102 4.102 11 C -0.091 4.091 12 C 0.105 3.895 13 N -0.676 5.676 14 C 0.087 3.913 15 C -0.110 4.110 16 C 0.061 3.939 17 N -0.538 5.538 18 C 0.067 3.933 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.126 4.126 23 C 0.059 3.941 24 C -0.097 4.097 25 C -0.130 4.130 26 C -0.097 4.097 27 H 0.259 0.741 28 H -0.008 1.008 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.342 0.658 35 H 0.025 0.975 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.081 0.919 41 H 0.028 0.972 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.022 0.978 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.054 0.946 53 H 0.048 0.952 54 H 0.046 0.954 55 H 0.022 0.978 56 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -23.620 13.446 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.140 4.140 11 C -0.129 4.129 12 C -0.005 4.005 13 N -0.306 5.306 14 C -0.022 4.022 15 C -0.148 4.148 16 C -0.067 4.067 17 N -0.262 5.262 18 C -0.060 4.060 19 C -0.128 4.128 20 C -0.173 4.173 21 C -0.180 4.180 22 C -0.164 4.164 23 C -0.069 4.069 24 C -0.135 4.135 25 C -0.169 4.169 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.010 0.990 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.040 0.960 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.073 0.927 53 H 0.067 0.933 54 H 0.065 0.935 55 H 0.041 0.959 56 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.546 -24.282 13.108 27.821 hybrid contribution -0.547 2.857 0.542 2.959 sum -4.093 -21.425 13.649 25.731 Atomic orbital electron populations 1.70015 1.07102 1.26984 1.51564 1.25755 0.95705 1.02346 0.95013 0.85717 0.78468 0.79306 0.78807 1.19673 1.20994 1.19729 1.21627 0.93017 0.92472 1.50205 0.93162 1.18616 0.93073 0.92343 0.93188 1.21502 0.97918 0.94665 0.99926 1.21379 0.98068 0.96461 0.97023 1.21383 0.94346 0.86497 0.98226 1.60689 1.28773 1.30660 1.10473 1.21552 0.95464 0.96021 0.89206 1.21690 0.96346 0.99585 0.97157 1.22036 0.93489 0.96601 0.94594 1.61950 1.04889 1.34955 1.24449 1.22139 0.98712 0.96813 0.88364 1.22632 0.98734 0.94961 0.96429 1.22935 1.01858 0.96714 0.95764 1.22827 1.01077 0.97387 0.96713 1.22897 1.01503 0.95220 0.96751 1.22084 0.93927 0.94498 0.96381 1.21494 0.96989 0.99784 0.95247 1.22128 0.98249 0.96676 0.99850 1.21322 0.98652 0.95924 0.97675 0.93188 0.98992 0.93636 0.93525 0.91151 0.93008 0.91787 0.83904 0.95733 0.90349 0.91107 0.89278 0.95678 0.90026 0.95348 0.89751 0.89603 0.91520 0.90265 0.90948 0.92258 0.90037 0.95972 0.89733 0.90981 0.92688 0.93328 0.93502 0.95889 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 2 C 0.01 0.57 5.30 84.65 0.45 1.02 16 3 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.17 8.56 25.60 0.22 -29.96 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.36 2.10 -11.54 -0.02 2.33 16 10 C -0.10 -4.28 5.14 30.59 0.16 -4.12 16 11 C -0.09 -3.17 5.53 30.59 0.17 -3.00 16 12 C 0.11 3.47 2.28 44.92 0.10 3.57 16 13 N -0.68 -18.31 6.06 -469.07 -2.84 -21.16 16 14 C 0.09 2.11 2.36 45.00 0.11 2.22 16 15 C -0.11 -2.16 5.36 30.65 0.16 -2.00 16 16 C 0.06 1.09 5.46 86.33 0.47 1.56 16 17 N -0.54 -9.77 4.66 -896.37 -4.17 -13.94 16 18 C 0.07 1.01 4.80 86.30 0.41 1.43 16 19 C -0.11 -1.51 3.71 -10.18 -0.04 -1.54 16 20 C -0.13 -1.54 7.64 31.12 0.24 -1.30 16 21 C -0.14 -1.59 8.07 31.12 0.25 -1.34 16 22 C -0.13 -1.66 7.65 31.21 0.24 -1.42 16 23 C 0.06 1.18 5.31 86.32 0.46 1.64 16 24 C -0.10 -2.22 5.58 30.65 0.17 -2.05 16 25 C -0.13 -4.95 5.15 30.58 0.16 -4.79 16 26 C -0.10 -4.67 4.98 30.58 0.15 -4.52 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 2.20 7.16 -2.39 -0.02 2.18 16 34 H 0.34 8.87 8.10 -89.69 -0.73 8.14 16 35 H 0.02 0.68 7.12 -2.39 -0.02 0.66 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.33 8.01 -2.39 -0.02 1.31 16 39 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.08 1.10 7.69 -2.39 -0.02 1.08 16 41 H 0.03 0.45 8.12 -2.38 -0.02 0.43 16 42 H 0.08 1.31 6.16 -2.39 -0.01 1.29 16 43 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 1.02 7.90 -2.39 -0.02 1.00 16 49 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.08 1.54 6.08 -2.39 -0.01 1.52 16 51 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.05 1.36 7.49 -2.38 -0.02 1.35 16 53 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 54 H 0.05 1.68 7.43 -2.38 -0.02 1.66 16 55 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 56 H 0.05 3.04 6.07 -2.39 -0.01 3.03 16 Total: -1.00 -59.47 409.66 -0.81 -60.27 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.08 Total: 24.34 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 3.86 Total: -42.28 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -6.77 Total: -88.75 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.47 -0.81 -60.27 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334665.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.202 kcal (2) G-P(sol) polarization free energy of solvation -59.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds