Wall clock time and date at job start Sat Apr 11 2020 00:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00243 * 2 1 4 4 H 1.48503 * 109.46900 * 274.99807 * 3 2 1 5 5 H 1.48499 * 109.46963 * 34.99601 * 3 2 1 6 6 H 1.48497 * 109.47368 * 154.99855 * 3 2 1 7 7 C 1.37882 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 176.50507 * 7 2 1 9 9 C 1.50699 * 120.00129 * 356.50139 * 7 2 1 10 10 C 1.52998 * 109.47028 * 182.38732 * 9 7 2 11 11 C 1.53003 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47363 * 59.99927 * 11 10 9 13 13 N 1.46898 * 109.46962 * 60.00101 * 12 11 10 14 14 C 1.46906 * 110.99873 * 155.00377 * 13 12 11 15 15 H 1.09000 * 110.64020 * 323.29745 * 14 13 12 16 16 C 1.54587 * 110.72662 * 86.45531 * 14 13 12 17 17 C 1.53999 * 105.14124 * 140.49309 * 16 14 13 18 18 N 1.47896 * 107.05723 * 1.22194 * 17 16 14 19 19 C 1.46897 * 111.00267 * 214.15778 * 18 17 16 20 20 C 1.53006 * 109.46819 * 299.97121 * 19 18 17 21 21 C 1.54883 * 110.48690 * 291.23233 * 20 19 18 22 22 C 1.54890 * 102.74811 * 203.37790 * 21 20 19 23 23 C 1.54263 * 104.19469 * 37.94661 * 22 21 20 24 24 C 1.53874 * 106.59832 * 336.38542 * 23 22 21 25 25 C 1.48534 * 105.82134 * 334.67281 * 18 17 16 26 26 C 1.53005 * 109.47346 * 300.00161 * 12 11 10 27 27 C 1.53002 * 109.46753 * 59.99904 * 26 12 11 28 28 H 0.96997 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47160 * 302.39262 * 9 7 2 30 30 H 1.08998 * 109.47138 * 60.00370 * 10 9 7 31 31 H 1.09000 * 109.47583 * 300.00271 * 10 9 7 32 32 H 1.09003 * 109.46845 * 299.99854 * 11 10 9 33 33 H 1.08997 * 109.47366 * 180.02562 * 11 10 9 34 34 H 1.08998 * 109.47235 * 180.02562 * 12 11 10 35 35 H 1.00896 * 111.00376 * 278.95374 * 13 12 11 36 36 H 1.09004 * 110.31227 * 21.57744 * 16 14 13 37 37 H 1.09000 * 110.39000 * 259.45094 * 16 14 13 38 38 H 1.08998 * 109.91524 * 241.87092 * 17 16 14 39 39 H 1.08998 * 110.08205 * 120.66661 * 17 16 14 40 40 H 1.08999 * 109.47384 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.46908 * 59.96971 * 19 18 17 42 42 H 1.09003 * 110.53784 * 53.84993 * 20 19 18 43 43 H 1.09003 * 110.75766 * 85.06727 * 21 20 19 44 44 H 1.09002 * 110.76022 * 321.69917 * 21 20 19 45 45 H 1.09000 * 110.48998 * 279.26533 * 22 21 20 46 46 H 1.09006 * 110.48738 * 156.61930 * 22 21 20 47 47 H 1.08993 * 110.03554 * 95.67496 * 23 22 21 48 48 H 1.09006 * 110.03348 * 217.10465 * 23 22 21 49 49 H 1.09003 * 110.03193 * 119.28738 * 24 23 22 50 50 H 1.08996 * 110.03652 * 240.71924 * 24 23 22 51 51 H 1.08999 * 110.66739 * 157.63948 * 25 18 17 52 52 H 1.09000 * 110.66694 * 280.76789 * 25 18 17 53 53 H 1.08998 * 109.47406 * 179.97438 * 26 12 11 54 54 H 1.09003 * 109.46957 * 300.00132 * 26 12 11 55 55 H 1.08998 * 109.47112 * 180.02562 * 27 26 12 56 56 H 1.08991 * 109.47439 * 59.99997 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5035 2.6198 0.8030 6 1 3.5956 1.4119 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0830 -1.1950 -0.0576 9 6 1.2531 -2.4980 0.0785 10 6 2.2490 -3.6587 0.1210 11 6 1.4861 -4.9826 0.2006 12 6 0.5862 -5.1274 -1.0282 13 7 1.4108 -5.1098 -2.2438 14 6 0.7382 -5.8099 -3.3464 15 1 0.1901 -6.6756 -2.9744 16 6 -0.2052 -4.8512 -4.1085 17 6 -0.0391 -5.2204 -5.5943 18 7 0.9202 -6.3443 -5.6575 19 6 1.7461 -6.2641 -6.8696 20 6 0.8452 -6.3188 -8.1051 21 6 0.2089 -7.7234 -8.2503 22 6 -0.1238 -7.7934 -9.7614 23 6 1.0646 -7.0849 -10.4436 24 6 1.6807 -6.1473 -9.3905 25 6 1.7565 -6.2321 -4.4351 26 6 -0.4098 -3.9666 -1.0707 27 6 0.3532 -2.6428 -1.1504 28 1 -0.4850 0.8400 0.0004 29 1 0.6415 -2.5108 0.9807 30 1 2.8903 -3.5554 0.9962 31 1 2.8606 -3.6460 -0.7812 32 1 0.8742 -4.9956 1.1026 33 1 2.1955 -5.8095 0.2313 34 1 0.0423 -6.0703 -0.9712 35 1 1.6476 -4.1649 -2.5065 36 1 0.0913 -3.8158 -3.9406 37 1 -1.2374 -5.0044 -3.7937 38 1 0.3522 -4.3667 -6.1475 39 1 -0.9977 -5.5264 -6.0133 40 1 2.4429 -7.1020 -6.8907 41 1 2.3039 -5.3276 -6.8678 42 1 0.0713 -5.5533 -8.0482 43 1 -0.6984 -7.8003 -7.6510 44 1 0.9218 -8.5008 -7.9752 45 1 -1.0543 -7.2662 -9.9720 46 1 -0.1892 -8.8307 -10.0900 47 1 1.8020 -7.8197 -10.7664 48 1 0.7139 -6.5069 -11.2986 49 1 2.7172 -6.4271 -9.2023 50 1 1.6289 -5.1143 -9.7344 51 1 2.2076 -7.1931 -4.1880 52 1 2.5229 -5.4675 -4.5622 53 1 -1.0506 -4.0695 -1.9464 54 1 -1.0216 -3.9797 -0.1687 55 1 -0.3562 -1.8158 -1.1802 56 1 0.9650 -2.6298 -2.0523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334727.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:09 Heat of formation + Delta-G solvation = -42.824511 kcal Electronic energy + Delta-G solvation = -28362.137852 eV Core-core repulsion = 24882.289921 eV Total energy + Delta-G solvation = -3479.847931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82632 -39.70792 -38.40040 -35.74227 -34.16869 -32.22223 -31.32632 -30.39343 -30.00621 -29.48541 -27.78169 -26.38442 -24.92702 -23.14422 -22.48352 -22.12770 -21.76025 -21.12696 -20.25270 -19.64069 -18.39192 -17.48410 -17.12370 -16.64840 -16.40344 -15.97186 -15.79311 -15.33468 -15.03711 -14.92431 -14.68972 -14.53897 -14.20465 -14.12131 -13.88389 -13.68401 -13.51663 -13.38080 -12.98599 -12.90835 -12.80921 -12.57588 -12.48710 -12.25331 -12.07332 -12.01064 -11.89127 -11.86246 -11.81573 -11.73167 -11.66291 -11.59321 -11.46779 -11.38728 -11.20879 -11.03262 -10.64546 -10.50916 -10.28424 -9.37081 -9.19242 -8.07046 -6.20342 1.37718 1.39682 1.49784 2.42673 2.89289 3.18894 3.39718 3.71952 3.72935 3.81008 3.82886 3.99660 4.03661 4.16059 4.17836 4.32408 4.33055 4.40296 4.48410 4.55118 4.63063 4.64491 4.65876 4.69258 4.72568 4.79377 4.86620 4.87282 4.88430 4.92796 4.94697 4.96076 4.97191 5.02887 5.09761 5.11356 5.14634 5.15938 5.19571 5.27700 5.28881 5.33295 5.41790 5.46098 5.52373 5.52878 5.56905 5.65277 5.73635 5.87724 6.07495 6.11192 6.22840 6.33949 6.45363 6.51893 6.93192 7.47423 8.96081 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002613 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.930950 B =10711.551733 C =11577.296570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.046 3.954 10 C -0.098 4.098 11 C -0.099 4.099 12 C 0.103 3.897 13 N -0.676 5.676 14 C 0.092 3.908 15 H 0.093 0.907 16 C -0.159 4.159 17 C 0.046 3.954 18 N -0.513 5.513 19 C 0.057 3.943 20 C -0.088 4.088 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.121 4.121 25 C 0.051 3.949 26 C -0.141 4.141 27 C -0.092 4.092 28 H 0.258 0.742 29 H -0.012 1.012 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.341 0.659 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.090 0.910 52 H 0.037 0.963 53 H 0.058 0.942 54 H 0.046 0.954 55 H 0.051 0.949 56 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -16.687 -17.442 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.066 0.934 9 C 0.028 3.972 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.007 4.007 13 N -0.307 5.307 14 C -0.020 4.020 15 H 0.111 0.889 16 C -0.199 4.199 17 C -0.083 4.083 18 N -0.237 5.237 19 C -0.071 4.071 20 C -0.107 4.107 21 C -0.140 4.140 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.077 4.077 26 C -0.180 4.180 27 C -0.130 4.130 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.108 0.892 52 H 0.055 0.945 53 H 0.076 0.924 54 H 0.065 0.935 55 H 0.069 0.931 56 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.015 -17.612 -17.274 24.670 hybrid contribution -0.016 3.042 0.064 3.043 sum -0.001 -14.570 -17.210 22.549 Atomic orbital electron populations 1.70027 1.07036 1.26790 1.51757 1.25709 0.95626 1.02157 0.95151 0.85706 0.78932 0.80024 0.77978 1.20342 1.21001 1.19423 1.21643 0.93028 0.92526 1.49674 0.93392 1.18630 0.93049 0.92254 0.93304 1.21419 0.97799 0.94576 0.99745 1.21489 0.98435 0.97223 0.96537 1.21449 0.92092 0.96923 0.90213 1.60672 1.43501 1.22594 1.03945 1.22495 0.92902 0.96218 0.90345 0.88880 1.23201 1.01432 0.99305 0.95963 1.22730 0.97701 0.92234 0.95614 1.64798 1.15257 1.41779 1.01892 1.22356 0.95055 1.00268 0.89434 1.21991 0.97191 0.98381 0.93125 1.22359 1.00256 0.95793 0.95610 1.22400 0.98107 1.00670 0.95300 1.22117 0.97693 0.98378 0.97828 1.22176 0.99489 0.99771 0.94440 1.23091 0.94553 1.01039 0.89006 1.22243 0.98436 0.96594 1.00730 1.21302 0.98414 0.95765 0.97522 0.93280 0.99361 0.94586 0.93067 0.92742 0.91028 0.89734 0.83803 0.92972 0.90905 0.94483 0.89943 0.90086 0.95592 0.91610 0.92129 0.91632 0.91954 0.91150 0.91369 0.91672 0.91484 0.92109 0.89154 0.94458 0.92360 0.93488 0.93062 0.95391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.38 11.36 21.45 0.24 -53.14 16 2 C 0.01 0.66 5.34 84.66 0.45 1.11 16 3 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.53 -29.52 8.53 25.60 0.22 -29.30 16 8 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16 9 C 0.05 2.30 2.09 -11.54 -0.02 2.27 16 10 C -0.10 -4.03 4.90 30.59 0.15 -3.88 16 11 C -0.10 -3.31 5.64 30.59 0.17 -3.14 16 12 C 0.10 3.20 2.85 44.92 0.13 3.33 16 13 N -0.68 -19.97 5.66 -463.33 -2.62 -22.59 16 14 C 0.09 2.28 3.34 46.12 0.15 2.43 16 15 H 0.09 2.23 7.53 -2.39 -0.02 2.22 16 16 C -0.16 -4.01 4.95 31.47 0.16 -3.86 16 17 C 0.05 1.01 5.35 86.45 0.46 1.47 16 18 N -0.51 -10.84 5.20 -883.01 -4.59 -15.43 16 19 C 0.06 1.07 4.07 86.31 0.35 1.42 16 20 C -0.09 -1.45 2.74 -9.72 -0.03 -1.48 16 21 C -0.10 -1.59 6.19 31.88 0.20 -1.39 16 22 C -0.13 -1.67 6.83 31.67 0.22 -1.46 16 23 C -0.12 -1.54 6.80 31.32 0.21 -1.33 16 24 C -0.12 -1.73 6.37 31.32 0.20 -1.53 16 25 C 0.05 1.18 6.25 86.65 0.54 1.72 16 26 C -0.14 -5.14 5.32 30.60 0.16 -4.98 16 27 C -0.09 -4.21 4.75 30.60 0.15 -4.06 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 2.11 7.21 -2.39 -0.02 2.09 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.29 7.49 -2.39 -0.02 2.28 16 35 H 0.34 11.59 5.01 -89.70 -0.45 11.14 16 36 H 0.05 1.55 7.56 -2.39 -0.02 1.53 16 37 H 0.07 1.79 7.53 -2.39 -0.02 1.77 16 38 H 0.04 0.86 7.58 -2.39 -0.02 0.84 16 39 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 40 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 41 H 0.03 0.53 8.00 -2.39 -0.02 0.51 16 42 H 0.07 1.20 6.93 -2.39 -0.02 1.19 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.03 7.99 -2.39 -0.02 1.01 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.07 0.92 7.84 -2.39 -0.02 0.90 16 50 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.04 0.94 7.96 -2.39 -0.02 0.92 16 53 H 0.06 1.95 5.95 -2.39 -0.01 1.93 16 54 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 55 H 0.05 2.74 6.13 -2.39 -0.01 2.73 16 56 H 0.03 1.26 6.24 -2.39 -0.01 1.25 16 Total: -1.00 -57.70 402.24 -0.71 -58.41 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.36 Total: 29.15 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 3.87 Total: -42.64 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -6.97 Total: -91.17 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -57.70 -0.71 -58.41 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334727.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.590 kcal (2) G-P(sol) polarization free energy of solvation -57.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds