Wall clock time and date at job start Sat Apr 11 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48504 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47332 * 299.99900 * 3 2 1 6 6 H 1.48506 * 109.47011 * 60.00163 * 3 2 1 7 7 C 1.37878 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46788 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47251 * 300.00192 * 10 9 7 12 12 C 1.52998 * 109.47194 * 299.99811 * 11 10 9 13 13 N 1.46896 * 109.47146 * 180.02562 * 12 11 10 14 14 C 1.46851 * 111.00107 * 302.18529 * 13 12 11 15 15 C 1.53039 * 109.52059 * 185.83784 * 14 13 12 16 16 C 1.53117 * 109.27961 * 300.82211 * 15 14 13 17 17 C 1.53110 * 109.16102 * 57.65658 * 16 15 14 18 18 C 1.46852 * 110.99938 * 66.39747 * 13 12 11 19 19 H 1.08999 * 109.46079 * 294.16571 * 18 13 12 20 20 C 1.53003 * 109.46141 * 54.14368 * 18 13 12 21 21 N 1.46899 * 109.47074 * 182.68897 * 20 18 13 22 22 C 1.48533 * 111.00024 * 58.41072 * 21 20 18 23 23 C 1.54934 * 103.22778 * 159.72414 * 22 21 20 24 24 C 1.54593 * 102.92012 * 322.58671 * 23 22 21 25 25 C 1.47892 * 111.00154 * 175.80887 * 21 20 18 26 26 C 1.52999 * 109.46751 * 60.00492 * 12 11 10 27 27 C 1.52999 * 109.46608 * 60.00366 * 9 7 2 28 28 H 0.96992 * 119.99711 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47055 * 300.00315 * 9 7 2 30 30 H 1.09001 * 109.46600 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.46776 * 60.00429 * 10 9 7 32 32 H 1.09007 * 109.46644 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.47201 * 60.00242 * 11 10 9 34 34 H 1.08998 * 109.47399 * 300.00310 * 12 11 10 35 35 H 1.08993 * 109.46174 * 305.85478 * 14 13 12 36 36 H 1.09001 * 109.45939 * 65.82533 * 14 13 12 37 37 H 1.09004 * 109.49728 * 180.88210 * 15 14 13 38 38 H 1.08993 * 109.53365 * 60.78476 * 15 14 13 39 39 H 1.09004 * 109.52141 * 297.75081 * 16 15 14 40 40 H 1.09002 * 109.57303 * 177.59431 * 16 15 14 41 41 H 1.09010 * 109.50364 * 182.40469 * 17 16 15 42 42 H 1.09001 * 109.50848 * 62.29024 * 17 16 15 43 43 H 1.09002 * 109.47013 * 302.68651 * 20 18 13 44 44 H 1.08997 * 109.47144 * 62.68788 * 20 18 13 45 45 H 1.09003 * 110.66684 * 278.15586 * 22 21 20 46 46 H 1.08995 * 110.66749 * 41.28271 * 22 21 20 47 47 H 1.09000 * 110.72776 * 204.23058 * 23 22 21 48 48 H 1.08996 * 110.87737 * 81.01285 * 23 22 21 49 49 H 1.09003 * 110.30934 * 263.04204 * 24 23 22 50 50 H 1.09001 * 110.39834 * 140.91670 * 24 23 22 51 51 H 1.09005 * 109.91735 * 333.50922 * 25 21 20 52 52 H 1.09001 * 109.91769 * 94.60602 * 25 21 20 53 53 H 1.08998 * 109.47318 * 59.99768 * 26 12 11 54 54 H 1.09001 * 109.47339 * 180.02562 * 26 12 11 55 55 H 1.09009 * 109.46752 * 180.02562 * 27 9 7 56 56 H 1.09001 * 109.46970 * 299.99315 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 3.1242 -3.5803 -1.2517 12 6 2.2436 -3.6609 -2.5003 13 7 3.0874 -3.5831 -3.7003 14 6 3.8775 -2.3454 -3.7087 15 6 4.6309 -2.2287 -5.0357 16 6 5.5481 -3.4430 -5.2048 17 6 4.7067 -4.7207 -5.1439 18 6 3.9511 -4.7653 -3.8139 19 1 4.6654 -4.7736 -2.9906 20 6 3.0931 -6.0309 -3.7571 21 7 3.9621 -7.2142 -3.8059 22 6 4.9329 -7.2085 -2.6817 23 6 5.3649 -8.6928 -2.5787 24 6 4.0540 -9.4559 -2.8777 25 6 3.1748 -8.4567 -3.6524 26 6 1.2494 -2.4980 -2.4990 27 6 0.3711 -2.5799 -1.2495 28 1 -0.4849 0.8400 0.0004 29 1 0.6248 -2.5571 0.8896 30 1 1.7004 -4.6060 -0.0014 31 1 2.8727 -3.6046 0.8878 32 1 3.8322 -4.4091 -1.2527 33 1 3.6691 -2.6364 -1.2516 34 1 1.6987 -4.6049 -2.5003 35 1 3.2129 -1.4894 -3.5919 36 1 4.5921 -2.3651 -2.8859 37 1 5.2295 -1.3177 -5.0353 38 1 3.9169 -2.1946 -5.8584 39 1 6.2876 -3.4553 -4.4040 40 1 6.0553 -3.3863 -6.1680 41 1 5.3594 -5.5904 -5.2210 42 1 3.9933 -4.7264 -5.9681 43 1 2.5192 -6.0395 -2.8304 44 1 2.4109 -6.0458 -4.6070 45 1 5.7881 -6.5743 -2.9152 46 1 4.4516 -6.8830 -1.7595 47 1 5.7239 -8.9214 -1.5753 48 1 6.1263 -8.9282 -3.3223 49 1 3.5657 -9.7478 -1.9480 50 1 4.2571 -10.3347 -3.4897 51 1 2.2630 -8.2517 -3.0913 52 1 2.9240 -8.8610 -4.6331 53 1 1.7944 -1.5540 -2.4990 54 1 0.6218 -2.5556 -3.3883 55 1 -0.1743 -3.5237 -1.2493 56 1 -0.3372 -1.7514 -1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335763.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:15 Heat of formation + Delta-G solvation = -26.149527 kcal Electronic energy + Delta-G solvation = -30109.138041 eV Core-core repulsion = 26630.013191 eV Total energy + Delta-G solvation = -3479.124849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35202 -39.58895 -38.27306 -35.02674 -34.14524 -33.34972 -31.42969 -30.93545 -29.72082 -29.66451 -26.89922 -26.38427 -25.00358 -23.63134 -22.84133 -21.96283 -21.70659 -21.40818 -20.59119 -19.65269 -17.77339 -17.27372 -17.02567 -16.84348 -16.55848 -15.84725 -15.71513 -15.18657 -15.01877 -14.95794 -14.87733 -14.66506 -14.53690 -14.09251 -14.02723 -13.54684 -13.31006 -13.17713 -13.10352 -12.91918 -12.87814 -12.67196 -12.56861 -12.39047 -12.37743 -12.21700 -12.10311 -11.99599 -11.95411 -11.68661 -11.56592 -11.50087 -11.41866 -11.18536 -10.96346 -10.88677 -10.66082 -10.54386 -10.28974 -9.36236 -9.03295 -8.03800 -6.13594 1.36986 1.40677 1.49431 2.44100 2.77677 3.24465 3.27907 3.71401 3.78098 3.86535 3.96189 4.00520 4.08200 4.10585 4.19826 4.28209 4.36104 4.37543 4.40187 4.44972 4.60353 4.64497 4.65864 4.67400 4.75067 4.78028 4.82685 4.88525 4.93823 4.94169 4.97555 4.99039 4.99767 5.00481 5.07686 5.08788 5.12825 5.16683 5.18929 5.23190 5.30539 5.33937 5.37350 5.42369 5.46506 5.57608 5.66463 5.69901 5.73638 5.91220 5.95721 6.03959 6.20304 6.29114 6.40409 6.45913 6.95337 7.52075 9.01235 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.004091 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.980007 B = 6842.757364 C = 7809.410145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.048 0.952 9 C 0.040 3.960 10 C -0.096 4.096 11 C -0.121 4.121 12 C 0.100 3.900 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.092 4.092 18 C 0.093 3.907 19 H 0.032 0.968 20 C 0.059 3.941 21 N -0.513 5.513 22 C 0.029 3.971 23 C -0.118 4.118 24 C -0.127 4.127 25 C 0.031 3.969 26 C -0.080 4.080 27 C -0.100 4.100 28 H 0.257 0.743 29 H -0.012 1.012 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.030 0.970 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.035 0.965 52 H 0.085 0.915 53 H 0.049 0.951 54 H 0.043 0.957 55 H 0.023 0.977 56 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.889 -15.696 -10.394 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.134 4.134 11 C -0.160 4.160 12 C -0.008 4.008 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.129 4.129 18 C -0.016 4.016 19 H 0.050 0.950 20 C -0.070 4.070 21 N -0.237 5.237 22 C -0.099 4.099 23 C -0.156 4.156 24 C -0.165 4.165 25 C -0.096 4.096 26 C -0.118 4.118 27 C -0.139 4.139 28 H 0.066 0.934 29 H 0.006 0.994 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.054 0.946 52 H 0.103 0.897 53 H 0.067 0.933 54 H 0.062 0.938 55 H 0.042 0.958 56 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.701 -15.549 -11.333 22.016 hybrid contribution -0.144 1.443 2.064 2.522 sum 10.557 -14.106 -9.269 19.908 Atomic orbital electron populations 1.70010 1.06988 1.26556 1.52206 1.25566 0.95399 1.01621 0.95495 0.85827 0.79344 0.81053 0.77428 1.19289 1.20817 1.21098 1.21326 0.92374 0.91405 1.48823 0.93375 1.18672 0.93052 0.92989 0.93136 1.21387 0.97641 0.97611 0.96804 1.21886 0.98023 1.00218 0.95878 1.21583 0.93607 0.98570 0.87084 1.62177 1.22947 1.01994 1.37955 1.22077 0.95519 0.92461 0.97294 1.21577 0.98251 0.98683 0.96434 1.21578 0.97419 0.94342 1.02071 1.21437 0.98198 0.97708 0.95593 1.21559 0.93117 0.88853 0.98059 0.94987 1.22277 0.94687 0.89630 1.00380 1.64755 1.15112 1.01464 1.42404 1.23273 0.96255 0.98378 0.91947 1.22462 0.97735 0.92995 1.02435 1.22386 0.95489 0.98365 1.00251 1.22925 0.95516 0.90380 1.00822 1.21231 0.96623 0.97649 0.96279 1.21341 0.98376 0.98492 0.95698 0.93372 0.99423 0.93643 0.94105 0.93248 0.92878 0.90698 0.92155 0.95877 0.91098 0.91413 0.92783 0.90344 0.90219 0.91933 0.95522 0.90465 0.90220 0.95177 0.90337 0.90122 0.91371 0.89643 0.94638 0.89690 0.93281 0.93803 0.95785 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.98 11.32 21.45 0.24 -52.73 16 2 C 0.02 0.94 5.30 84.65 0.45 1.39 16 3 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.50 -26.91 6.61 25.60 0.17 -26.74 16 8 H 0.05 2.59 6.71 -2.91 -0.02 2.57 16 9 C 0.04 2.00 2.59 -11.54 -0.03 1.97 16 10 C -0.10 -3.99 5.41 30.59 0.17 -3.82 16 11 C -0.12 -4.52 4.27 30.59 0.13 -4.39 16 12 C 0.10 3.55 1.86 44.92 0.08 3.63 16 13 N -0.53 -16.40 4.47 -846.02 -3.78 -20.18 16 14 C 0.05 1.72 4.62 86.33 0.40 2.12 16 15 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 16 C -0.12 -2.49 6.00 30.67 0.18 -2.31 16 17 C -0.09 -2.06 5.23 30.64 0.16 -1.90 16 18 C 0.09 2.43 1.29 44.94 0.06 2.49 16 19 H 0.03 0.91 5.38 -2.39 -0.01 0.90 16 20 C 0.06 1.47 3.93 86.30 0.34 1.81 16 21 N -0.51 -10.98 4.72 -883.04 -4.17 -15.14 16 22 C 0.03 0.59 5.34 86.65 0.46 1.06 16 23 C -0.12 -1.83 7.06 31.80 0.22 -1.60 16 24 C -0.13 -1.89 6.93 31.47 0.22 -1.67 16 25 C 0.03 0.58 6.70 86.45 0.58 1.16 16 26 C -0.08 -3.37 4.82 30.58 0.15 -3.23 16 27 C -0.10 -4.78 5.23 30.58 0.16 -4.62 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.66 6.69 -2.38 -0.02 1.65 16 33 H 0.05 2.21 4.98 -2.39 -0.01 2.20 16 34 H 0.08 2.63 5.78 -2.39 -0.01 2.61 16 35 H 0.06 2.20 6.08 -2.39 -0.01 2.18 16 36 H 0.02 0.78 6.60 -2.39 -0.02 0.76 16 37 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.69 7.71 -2.38 -0.02 1.67 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.03 0.76 5.86 -2.39 -0.01 0.74 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 1.62 7.59 -2.39 -0.02 1.60 16 46 H 0.03 0.70 8.01 -2.39 -0.02 0.68 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.04 0.72 7.67 -2.38 -0.02 0.70 16 52 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.05 2.30 5.41 -2.39 -0.01 2.29 16 54 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 55 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 56 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 Total: -1.00 -57.57 389.78 -0.77 -58.34 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.82 Total: 21.19 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 4.09 Total: -37.24 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -7.70 Total: -88.05 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -57.57 -0.77 -58.34 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335763.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.190 kcal (2) G-P(sol) polarization free energy of solvation -57.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds