Wall clock time and date at job start Sat Apr 11 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48504 * 109.46833 * 274.98404 * 3 2 1 5 5 H 1.48492 * 109.47282 * 34.98927 * 3 2 1 6 6 H 1.48502 * 109.47011 * 154.98855 * 3 2 1 7 7 C 1.37872 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99803 * 189.54677 * 7 2 1 9 9 C 1.50694 * 120.00514 * 9.54980 * 7 2 1 10 10 C 1.53002 * 109.47474 * 185.42384 * 9 7 2 11 11 C 1.52998 * 109.47041 * 300.00297 * 10 9 7 12 12 C 1.52999 * 109.46798 * 299.99418 * 11 10 9 13 13 N 1.46907 * 109.46512 * 180.02562 * 12 11 10 14 14 C 1.46964 * 110.99549 * 179.97438 * 13 12 11 15 15 C 1.53054 * 109.36200 * 183.18872 * 14 13 12 16 16 N 1.46958 * 109.36470 * 301.60190 * 15 14 13 17 17 C 1.46900 * 110.99724 * 183.18917 * 16 15 14 18 18 C 1.52999 * 109.47148 * 170.00106 * 17 16 15 19 19 C 1.54260 * 110.03279 * 292.16866 * 18 17 16 20 20 C 1.54892 * 104.19641 * 217.10575 * 19 18 17 21 21 C 1.54893 * 102.74779 * 37.93923 * 20 19 18 22 22 C 1.53872 * 110.03193 * 174.99856 * 18 17 16 23 23 C 1.46955 * 110.87839 * 59.32278 * 16 15 14 24 24 C 1.46955 * 111.00440 * 303.80252 * 13 12 11 25 25 C 1.52993 * 109.47007 * 60.00492 * 12 11 10 26 26 C 1.52995 * 109.47395 * 299.99687 * 25 12 11 27 27 H 0.96999 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47132 * 305.42540 * 9 7 2 29 29 H 1.09004 * 109.47319 * 179.97438 * 10 9 7 30 30 H 1.09002 * 109.47037 * 59.99852 * 10 9 7 31 31 H 1.09006 * 109.46680 * 179.97438 * 11 10 9 32 32 H 1.08991 * 109.47504 * 60.00020 * 11 10 9 33 33 H 1.08996 * 109.47555 * 300.00054 * 12 11 10 34 34 H 1.09006 * 109.48581 * 63.22790 * 14 13 12 35 35 H 1.08998 * 109.50921 * 303.17137 * 14 13 12 36 36 H 1.09004 * 109.48584 * 181.63210 * 15 14 13 37 37 H 1.09002 * 109.50576 * 61.58473 * 15 14 13 38 38 H 1.09002 * 109.47134 * 49.99497 * 17 16 15 39 39 H 1.09003 * 109.47063 * 290.00094 * 17 16 15 40 40 H 1.09003 * 110.01293 * 53.60996 * 18 17 16 41 41 H 1.09004 * 110.48580 * 335.78372 * 19 18 17 42 42 H 1.08993 * 110.49051 * 98.42319 * 19 18 17 43 43 H 1.08997 * 110.75568 * 279.62645 * 20 19 18 44 44 H 1.08997 * 110.75461 * 156.25234 * 20 19 18 45 45 H 1.08997 * 110.48542 * 203.38343 * 21 20 19 46 46 H 1.08998 * 110.59796 * 80.79412 * 21 20 19 47 47 H 1.09003 * 110.03228 * 238.57103 * 22 18 17 48 48 H 1.08999 * 110.03346 * 0.02562 * 22 18 17 49 49 H 1.09004 * 109.48903 * 60.64754 * 23 16 15 50 50 H 1.09000 * 109.48701 * 180.70906 * 23 16 15 51 51 H 1.08999 * 109.48619 * 296.78084 * 24 13 12 52 52 H 1.08997 * 109.48688 * 56.84238 * 24 13 12 53 53 H 1.09004 * 109.47263 * 59.99772 * 25 12 11 54 54 H 1.09004 * 109.47240 * 179.97438 * 25 12 11 55 55 H 1.09004 * 109.46984 * 300.00255 * 26 25 12 56 56 H 1.08995 * 109.47481 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1072 -1.3948 5 1 1.5032 2.6199 0.8028 6 1 3.5954 1.4121 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1557 9 6 1.2668 -2.4902 -0.2154 10 6 2.2325 -3.6630 -0.0346 11 6 3.3702 -3.5483 -1.0511 12 6 2.7930 -3.5767 -2.4677 13 7 3.8855 -3.4672 -3.4438 14 6 3.3675 -3.4917 -4.8189 15 6 4.5390 -3.4558 -5.8031 16 7 5.3379 -2.2453 -5.5658 17 6 6.4303 -2.1358 -6.5419 18 6 7.0811 -0.7560 -6.4262 19 6 6.0958 0.3341 -6.8957 20 6 6.9906 1.3652 -7.6274 21 6 8.0215 0.4674 -8.3556 22 6 8.3055 -0.6713 -7.3543 23 6 5.8558 -2.2209 -4.1908 24 6 4.6847 -2.2571 -3.2061 25 6 1.8273 -2.4040 -2.6486 26 6 0.6896 -2.5186 -1.6321 27 1 -0.4850 0.8400 -0.0004 28 1 0.4562 -2.5719 0.5089 29 1 1.6987 -4.6006 -0.1903 30 1 2.6437 -3.6428 0.9747 31 1 4.0584 -4.3836 -0.9219 32 1 3.9038 -2.6109 -0.8949 33 1 2.2594 -4.5142 -2.6240 34 1 2.7285 -2.6239 -4.9823 35 1 2.7899 -4.4030 -4.9741 36 1 4.1563 -3.4447 -6.8237 37 1 5.1631 -4.3377 -5.6584 38 1 6.0327 -2.2669 -7.5483 39 1 7.1746 -2.9066 -6.3421 40 1 7.3809 -0.5703 -5.3948 41 1 5.3598 -0.0865 -7.5810 42 1 5.6022 0.7960 -6.0408 43 1 7.4869 2.0218 -6.9128 44 1 6.4072 1.9431 -8.3441 45 1 8.9331 1.0266 -8.5659 46 1 7.5987 0.0681 -9.2775 47 1 9.1993 -0.4435 -6.7735 48 1 8.4357 -1.6130 -7.8875 49 1 6.4949 -3.0887 -4.0274 50 1 6.4331 -1.3094 -4.0358 51 1 4.0609 -1.3751 -3.3509 52 1 5.0674 -2.2687 -2.1856 53 1 2.3610 -1.4664 -2.4924 54 1 1.4164 -2.4239 -3.6580 55 1 0.1560 -3.4561 -1.7883 56 1 0.0014 -1.6833 -1.7612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340142.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:22 Heat of formation + Delta-G solvation = -33.233003 kcal Electronic energy + Delta-G solvation = -29209.970228 eV Core-core repulsion = 25730.538216 eV Total energy + Delta-G solvation = -3479.432012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02808 -39.65315 -38.27475 -35.96902 -34.05300 -32.08450 -31.57152 -31.14643 -29.79176 -29.44521 -27.28359 -26.21113 -24.81883 -24.05627 -23.14156 -22.15709 -21.49252 -20.82386 -20.33389 -19.82071 -17.71256 -17.60650 -16.80127 -16.52858 -16.25573 -15.82076 -15.78794 -15.70010 -15.39204 -15.19424 -14.88562 -14.79510 -14.52889 -14.17650 -14.00654 -13.64490 -13.34525 -13.16576 -13.08358 -12.86810 -12.68232 -12.54569 -12.41407 -12.32983 -12.22823 -12.03968 -11.95926 -11.92130 -11.83975 -11.73508 -11.56485 -11.49483 -11.42603 -11.38672 -11.05408 -10.92248 -10.67434 -10.51428 -10.32140 -9.26303 -9.05172 -8.09231 -6.12616 1.35747 1.39023 1.46444 2.43271 2.93390 3.02653 3.23185 3.76097 3.78704 3.83192 3.94354 3.98233 4.17295 4.20522 4.27972 4.36725 4.39964 4.47341 4.51231 4.55810 4.58964 4.62190 4.65405 4.72082 4.75789 4.77594 4.83581 4.87112 4.87917 4.89302 4.92572 4.94308 4.97652 5.00209 5.02597 5.10914 5.14760 5.15755 5.16857 5.27625 5.28888 5.38953 5.43025 5.50679 5.51445 5.56684 5.63540 5.65753 5.70563 5.92337 6.09203 6.11633 6.12481 6.28022 6.31306 6.45926 6.98047 7.51863 9.00271 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003679 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.472519 B = 7609.916892 C = 8989.474536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.931 3.069 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.501 4.501 8 H 0.054 0.946 9 C 0.037 3.963 10 C -0.100 4.100 11 C -0.091 4.091 12 C 0.101 3.899 13 N -0.528 5.528 14 C 0.053 3.947 15 C 0.067 3.933 16 N -0.549 5.549 17 C 0.069 3.931 18 C -0.089 4.089 19 C -0.105 4.105 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.116 4.116 23 C 0.068 3.932 24 C 0.055 3.945 25 C -0.117 4.117 26 C -0.091 4.091 27 H 0.256 0.744 28 H -0.008 1.008 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.080 0.920 51 H 0.020 0.980 52 H 0.076 0.924 53 H 0.044 0.956 54 H 0.041 0.959 55 H 0.033 0.967 56 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.562 -5.179 -17.018 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.181 4.181 3 Si 0.758 3.242 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.138 4.138 11 C -0.129 4.129 12 C -0.007 4.007 13 N -0.251 5.251 14 C -0.076 4.076 15 C -0.061 4.061 16 N -0.274 5.274 17 C -0.058 4.058 18 C -0.108 4.108 19 C -0.143 4.143 20 C -0.167 4.167 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.060 4.060 24 C -0.074 4.074 25 C -0.156 4.156 26 C -0.130 4.130 27 H 0.065 0.935 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.098 0.902 51 H 0.038 0.962 52 H 0.094 0.906 53 H 0.063 0.937 54 H 0.060 0.940 55 H 0.052 0.948 56 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.440 -5.084 -17.020 23.536 hybrid contribution -0.373 1.378 0.517 1.518 sum 15.067 -3.706 -16.502 22.651 Atomic orbital electron populations 1.70086 1.07187 1.26671 1.52288 1.25576 0.95271 1.01704 0.95597 0.85944 0.79442 0.81059 0.77759 1.20865 1.21379 1.18914 1.21389 0.93795 0.91792 1.46980 0.92818 1.18687 0.93650 0.93246 0.92525 1.21444 0.96873 0.97509 0.98002 1.21404 0.97326 1.01154 0.93028 1.21550 0.90104 0.97091 0.91973 1.62551 1.22209 1.37386 1.02929 1.22205 0.96505 1.00896 0.87960 1.22096 0.94320 0.90711 0.98945 1.62110 1.23612 1.38765 1.02959 1.22231 0.91587 0.96194 0.95779 1.21791 0.95166 0.94331 0.99487 1.22217 0.97242 0.95687 0.99132 1.22549 0.97459 0.97526 0.99128 1.22332 0.98959 0.96322 0.98121 1.22159 0.96881 0.99361 0.97024 1.22078 0.95333 1.00893 0.87703 1.22147 0.94914 0.91096 0.99231 1.21831 0.97497 0.99416 0.96866 1.21241 0.96801 0.97931 0.97051 0.93480 0.98973 0.92957 0.93511 0.91547 0.92777 0.90255 0.95450 0.89547 0.89162 0.93974 0.90124 0.94577 0.91974 0.91962 0.93817 0.92008 0.91519 0.91075 0.91269 0.91583 0.90967 0.94073 0.90205 0.96173 0.90603 0.93725 0.93999 0.94837 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.68 12.16 21.45 0.26 -54.41 16 2 C 0.02 0.92 5.20 84.65 0.44 1.36 16 3 Si 0.93 44.46 29.55 68.60 2.03 46.48 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.50 -27.03 6.63 25.60 0.17 -26.86 16 8 H 0.05 2.86 6.54 -2.91 -0.02 2.84 16 9 C 0.04 1.86 2.45 -11.54 -0.03 1.83 16 10 C -0.10 -4.04 5.42 30.59 0.17 -3.88 16 11 C -0.09 -3.30 4.63 30.59 0.14 -3.16 16 12 C 0.10 3.47 2.31 44.91 0.10 3.58 16 13 N -0.53 -15.99 4.74 -870.47 -4.12 -20.11 16 14 C 0.05 1.41 5.13 86.31 0.44 1.85 16 15 C 0.07 1.48 5.61 86.31 0.48 1.97 16 16 N -0.55 -12.83 4.53 -895.70 -4.06 -16.89 16 17 C 0.07 1.28 4.01 86.30 0.35 1.62 16 18 C -0.09 -1.61 2.88 -10.07 -0.03 -1.64 16 19 C -0.11 -2.11 6.19 31.67 0.20 -1.92 16 20 C -0.13 -2.14 6.91 31.89 0.22 -1.92 16 21 C -0.12 -1.62 6.83 31.67 0.22 -1.41 16 22 C -0.12 -1.64 6.46 31.32 0.20 -1.44 16 23 C 0.07 1.73 5.42 86.31 0.47 2.20 16 24 C 0.05 1.71 4.83 86.31 0.42 2.13 16 25 C -0.12 -4.80 4.29 30.59 0.13 -4.66 16 26 C -0.09 -4.29 5.29 30.59 0.16 -4.12 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 28 H -0.01 -0.45 8.09 -2.38 -0.02 -0.47 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.05 2.15 4.65 -2.39 -0.01 2.14 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.03 0.85 6.49 -2.38 -0.02 0.83 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 1.69 8.07 -2.38 -0.02 1.67 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.35 7.89 -2.39 -0.02 1.34 16 39 H 0.04 0.63 8.12 -2.39 -0.02 0.62 16 40 H 0.06 1.26 6.27 -2.39 -0.01 1.25 16 41 H 0.06 1.29 7.76 -2.38 -0.02 1.27 16 42 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.90 7.67 -2.39 -0.02 0.88 16 49 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 50 H 0.08 1.95 6.23 -2.39 -0.01 1.94 16 51 H 0.02 0.75 6.57 -2.39 -0.02 0.73 16 52 H 0.08 2.48 6.06 -2.39 -0.01 2.46 16 53 H 0.04 2.09 5.64 -2.39 -0.01 2.07 16 54 H 0.04 1.62 6.48 -2.38 -0.02 1.60 16 55 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 56 H 0.03 1.74 6.91 -2.39 -0.02 1.72 16 Total: -1.00 -59.53 394.51 -0.83 -60.36 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.81 Total: 19.04 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.25 Total: -34.48 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -7.92 Total: -91.41 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.53 -0.83 -60.36 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340142.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.130 kcal (2) G-P(sol) polarization free energy of solvation -59.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds