Wall clock time and date at job start Sat Apr 11 2020 00:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46902 * 109.52550 * 2 1 4 4 C 1.48538 * 110.99952 * 65.19560 * 3 2 1 5 5 C 1.54938 * 103.22454 * 159.72193 * 4 3 2 6 6 C 1.54590 * 102.92447 * 322.58846 * 5 4 3 7 7 C 1.47896 * 111.00324 * 182.59204 * 3 2 1 8 8 C 1.53123 * 109.52318 * 120.12358 * 2 1 3 9 9 C 1.53037 * 109.27454 * 62.24961 * 8 2 1 10 10 N 1.46845 * 109.51491 * 59.19013 * 9 8 2 11 11 C 1.46899 * 111.00407 * 174.15524 * 10 9 8 12 12 C 1.53004 * 109.46991 * 294.99804 * 11 10 9 13 13 C 1.52999 * 109.47076 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47426 * 60.00025 * 13 12 11 15 15 C 1.50705 * 109.47138 * 59.99587 * 14 13 12 16 16 H 1.07994 * 119.99896 * 240.00303 * 15 14 13 17 17 C 1.37880 * 119.99848 * 60.00459 * 15 14 13 18 18 N 1.31510 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99863 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47509 * 89.99950 * 19 17 15 21 21 H 1.48505 * 109.47166 * 209.99639 * 19 17 15 22 22 H 1.48499 * 109.47295 * 329.99783 * 19 17 15 23 23 C 1.53004 * 109.46973 * 300.00038 * 14 13 12 24 24 C 1.52998 * 109.47564 * 174.99796 * 11 10 9 25 25 C 1.46855 * 111.19655 * 298.23752 * 10 9 8 26 26 C 1.53040 * 109.51244 * 61.75631 * 25 10 9 27 27 H 1.08997 * 109.47534 * 299.87685 * 1 2 3 28 28 H 1.09006 * 109.47254 * 59.87211 * 1 2 3 29 29 H 1.09003 * 109.47664 * 179.87331 * 1 2 3 30 30 H 1.08994 * 110.66998 * 278.16050 * 4 3 2 31 31 H 1.08999 * 110.66715 * 41.29016 * 4 3 2 32 32 H 1.09001 * 110.72291 * 204.23089 * 5 4 3 33 33 H 1.09001 * 110.72039 * 80.94956 * 5 4 3 34 34 H 1.09006 * 110.31103 * 263.04529 * 6 5 4 35 35 H 1.08999 * 110.39480 * 140.91949 * 6 5 4 36 36 H 1.09001 * 109.91917 * 333.51422 * 7 3 2 37 37 H 1.09004 * 109.91688 * 94.60621 * 7 3 2 38 38 H 1.09002 * 109.50272 * 302.31379 * 8 2 1 39 39 H 1.09001 * 109.50494 * 182.18935 * 8 2 1 40 40 H 1.09004 * 109.46502 * 179.19523 * 9 8 2 41 41 H 1.08999 * 109.46733 * 299.17141 * 9 8 2 42 42 H 1.09005 * 109.47224 * 54.98970 * 11 10 9 43 43 H 1.08999 * 109.47139 * 300.00183 * 12 11 10 44 44 H 1.09004 * 109.46837 * 59.99436 * 12 11 10 45 45 H 1.08995 * 109.47223 * 299.99408 * 13 12 11 46 46 H 1.09003 * 109.46506 * 179.97438 * 13 12 11 47 47 H 1.08993 * 109.47491 * 179.97438 * 14 13 12 48 48 H 0.97000 * 119.99977 * 180.02562 * 18 17 15 49 49 H 1.09005 * 109.46455 * 299.99994 * 23 14 13 50 50 H 1.08996 * 109.46948 * 179.97438 * 23 14 13 51 51 H 1.09002 * 109.46731 * 299.99745 * 24 11 10 52 52 H 1.08995 * 109.47422 * 59.99486 * 24 11 10 53 53 H 1.09001 * 109.46640 * 301.74350 * 25 10 9 54 54 H 1.08998 * 109.45481 * 181.76311 * 25 10 9 55 55 H 1.09002 * 109.49990 * 180.87654 * 26 25 10 56 56 H 1.09000 * 109.49945 * 60.75806 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0209 1.3845 0.0000 4 6 1.6505 2.0807 1.2588 5 6 2.6513 3.2620 1.3182 6 6 3.9535 2.6402 0.7639 7 6 3.4980 1.4231 -0.0624 8 6 2.0416 -0.7243 1.2483 9 6 1.5765 -2.1818 1.2129 10 7 2.0926 -2.8322 0.0017 11 6 1.7827 -4.2681 0.0024 12 6 2.5256 -4.9497 1.1533 13 6 2.2023 -6.4452 1.1543 14 6 2.6430 -7.0632 -0.1741 15 6 4.1272 -6.8702 -0.3501 16 1 4.5030 -6.3168 -1.1980 17 6 5.0054 -7.4001 0.5714 18 7 4.5477 -8.0736 1.6040 19 14 6.8450 -7.1603 0.3536 20 1 7.2663 -5.9127 1.0400 21 1 7.5680 -8.3168 0.9412 22 1 7.1634 -7.0608 -1.0934 23 6 1.9001 -6.3816 -1.3250 24 6 2.2238 -4.8858 -1.3261 25 6 1.5766 -2.1833 -1.2104 26 6 2.0416 -0.7257 -1.2473 27 1 -0.3634 0.5119 0.8910 28 1 -0.3634 0.5158 -0.8889 29 1 -0.3634 -1.0276 -0.0023 30 1 0.6252 2.4471 1.2084 31 1 1.7826 1.4210 2.1164 32 1 2.7911 3.5977 2.3458 33 1 2.3161 4.0836 0.6852 34 1 4.5989 2.3214 1.5824 35 1 4.4753 3.3554 0.1280 36 1 3.9117 0.5091 0.3636 37 1 3.8233 1.5305 -1.0973 38 1 1.6456 -0.2375 2.1395 39 1 3.1309 -0.6903 1.2679 40 1 1.9512 -2.7041 2.0933 41 1 0.4870 -2.2154 1.2071 42 1 0.7092 -4.4081 0.1295 43 1 3.5990 -4.8097 1.0263 44 1 2.2113 -4.5096 2.0997 45 1 1.1288 -6.5847 1.2817 46 1 2.7319 -6.9307 1.9740 47 1 2.4131 -8.1286 -0.1732 48 1 5.1654 -8.4461 2.2525 49 1 0.8266 -6.5212 -1.1976 50 1 2.2144 -6.8216 -2.2714 51 1 1.6945 -4.4002 -2.1460 52 1 3.2973 -4.7458 -1.4532 53 1 0.4871 -2.2169 -1.2047 54 1 1.9515 -2.7065 -2.0900 55 1 1.6457 -0.2399 -2.1392 56 1 3.1309 -0.6917 -1.2669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173341217.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:24 Heat of formation + Delta-G solvation = -15.170766 kcal Electronic energy + Delta-G solvation = -29684.780769 eV Core-core repulsion = 26206.131995 eV Total energy + Delta-G solvation = -3478.648774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61249 -39.91126 -37.97993 -35.36719 -33.86627 -32.36835 -31.21007 -30.97102 -30.17394 -29.30694 -27.94738 -26.56507 -24.78411 -24.07071 -22.74656 -22.38374 -21.59003 -21.37241 -20.44403 -18.95563 -17.88955 -17.70009 -16.78816 -16.71862 -16.47636 -15.93077 -15.62061 -15.40208 -15.25481 -14.87480 -14.70767 -14.62731 -14.38927 -14.22336 -13.71338 -13.40658 -13.30216 -13.19809 -13.03188 -12.94065 -12.82015 -12.62949 -12.42832 -12.42190 -12.32823 -12.19900 -12.12649 -12.04415 -11.93499 -11.82861 -11.65699 -11.47669 -11.42035 -11.35092 -11.07066 -10.93011 -10.64270 -10.38045 -10.26312 -9.21710 -9.06455 -8.01349 -6.10243 1.40319 1.42413 1.50544 2.47011 2.92931 3.06094 3.27297 3.66258 3.73556 3.83089 3.95646 4.05225 4.05625 4.11642 4.16548 4.25774 4.39520 4.41497 4.46412 4.47418 4.57888 4.62830 4.67955 4.70328 4.71213 4.77479 4.82524 4.88877 4.91388 4.91708 4.95126 4.99241 5.00239 5.00667 5.02344 5.06377 5.10579 5.10771 5.19051 5.21776 5.25714 5.30190 5.35950 5.42482 5.48920 5.57515 5.67522 5.72380 5.76553 5.99306 6.03429 6.17658 6.22187 6.33207 6.36525 6.48839 6.98967 7.55169 9.03610 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.003450 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.814019 B = 8113.700129 C = 8901.095300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 N -0.509 5.509 4 C 0.025 3.975 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.028 3.972 8 C -0.135 4.135 9 C 0.060 3.940 10 N -0.543 5.543 11 C 0.107 3.893 12 C -0.077 4.077 13 C -0.102 4.102 14 C 0.039 3.961 15 C -0.501 4.501 16 H 0.051 0.949 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.939 3.061 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.269 1.269 23 C -0.101 4.101 24 C -0.093 4.093 25 C 0.053 3.947 26 C -0.095 4.095 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.024 0.976 46 H 0.057 0.943 47 H -0.012 1.012 48 H 0.256 0.744 49 H 0.048 0.952 50 H 0.048 0.952 51 H 0.067 0.933 52 H 0.054 0.946 53 H 0.039 0.961 54 H 0.078 0.922 55 H 0.079 0.921 56 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 22.189 -1.694 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.017 3.983 3 N -0.232 5.232 4 C -0.102 4.102 5 C -0.156 4.156 6 C -0.168 4.168 7 C -0.100 4.100 8 C -0.174 4.174 9 C -0.069 4.069 10 N -0.268 5.268 11 C -0.001 4.001 12 C -0.115 4.115 13 C -0.141 4.141 14 C 0.020 3.980 15 C -0.539 4.539 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.766 3.234 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.194 1.194 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.075 4.075 26 C -0.133 4.133 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.006 0.994 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.085 0.915 52 H 0.073 0.927 53 H 0.057 0.943 54 H 0.096 0.904 55 H 0.097 0.903 56 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.500 22.418 -2.023 23.725 hybrid contribution 0.802 -1.180 0.944 1.710 sum -6.699 21.238 -1.079 22.295 Atomic orbital electron populations 1.21851 0.93058 1.01636 1.02528 1.21139 0.95753 0.87391 0.94056 1.65038 1.09668 1.13573 1.34948 1.23383 1.00296 0.95441 0.91119 1.22461 0.94077 0.97429 1.01642 1.22390 0.98061 0.96917 0.99408 1.22917 0.88499 0.97934 1.00664 1.22207 1.01123 0.94726 0.99345 1.22044 0.97183 0.94611 0.93040 1.61906 1.60309 1.02040 1.02498 1.21394 0.95991 0.86471 0.96260 1.21213 0.99846 0.94755 0.95713 1.21370 0.96337 0.95212 1.01154 1.18684 0.94166 0.93136 0.91986 1.21388 0.92161 1.32401 1.07972 0.93039 1.25580 1.01941 0.95395 0.95404 1.70006 1.35057 1.37489 1.13506 0.85846 0.81960 0.77286 0.78327 1.20695 1.21324 1.19392 1.21473 0.98207 0.95650 0.98587 1.21469 1.01200 0.94739 0.95604 1.22214 0.97423 0.94689 0.93178 1.21571 1.00775 0.93438 0.97524 0.92135 0.91650 0.92485 0.89647 0.93278 0.90114 0.90588 0.91626 0.90423 0.94120 0.90890 0.90465 0.92256 0.91944 0.94375 0.95185 0.93678 0.94149 0.95731 0.92407 0.99368 0.93477 0.93294 0.93363 0.91466 0.92746 0.94284 0.90354 0.90259 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.87 71.98 0.57 -1.91 16 2 C 0.11 2.20 0.44 3.60 0.00 2.20 16 3 N -0.51 -9.84 5.10 -833.24 -4.25 -14.08 16 4 C 0.02 0.40 5.43 86.65 0.47 0.87 16 5 C -0.12 -1.63 7.06 31.80 0.22 -1.40 16 6 C -0.13 -2.01 6.93 31.47 0.22 -1.79 16 7 C 0.03 0.54 5.10 86.45 0.44 0.98 16 8 C -0.14 -3.12 4.15 30.65 0.13 -2.99 16 9 C 0.06 1.62 5.04 86.33 0.44 2.05 16 10 N -0.54 -16.67 4.52 -871.08 -3.94 -20.61 16 11 C 0.11 3.78 1.96 44.92 0.09 3.87 16 12 C -0.08 -3.28 4.89 30.60 0.15 -3.13 16 13 C -0.10 -4.87 5.24 30.59 0.16 -4.71 16 14 C 0.04 1.94 2.59 -11.54 -0.03 1.91 16 15 C -0.50 -27.21 6.61 25.60 0.17 -27.04 16 16 H 0.05 2.78 6.71 -2.91 -0.02 2.76 16 17 C 0.01 0.80 5.30 84.66 0.45 1.25 16 18 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 19 Si 0.94 44.53 29.54 68.60 2.03 46.56 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 C -0.10 -4.11 5.41 30.61 0.17 -3.95 16 24 C -0.09 -3.39 4.44 30.61 0.14 -3.26 16 25 C 0.05 1.36 4.76 86.33 0.41 1.77 16 26 C -0.09 -2.16 4.77 30.65 0.15 -2.01 16 27 H 0.06 1.02 7.09 -2.39 -0.02 1.00 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.06 1.13 4.92 -2.39 -0.01 1.12 16 30 H 0.09 1.27 7.70 -2.39 -0.02 1.25 16 31 H 0.05 0.84 5.53 -2.39 -0.01 0.82 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.93 5.29 -2.39 -0.01 0.91 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.59 6.11 -2.39 -0.01 1.58 16 39 H 0.06 1.56 6.05 -2.39 -0.01 1.55 16 40 H 0.06 1.88 6.18 -2.38 -0.01 1.86 16 41 H 0.04 0.98 6.51 -2.39 -0.02 0.96 16 42 H 0.03 1.04 8.13 -2.38 -0.02 1.02 16 43 H 0.04 2.20 7.22 -2.39 -0.02 2.18 16 44 H 0.04 1.59 6.40 -2.39 -0.02 1.57 16 45 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 47 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 48 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 2.08 6.19 -2.39 -0.01 2.07 16 52 H 0.05 2.27 6.62 -2.39 -0.02 2.26 16 53 H 0.04 0.94 6.51 -2.39 -0.02 0.93 16 54 H 0.08 2.08 5.83 -2.39 -0.01 2.06 16 55 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 56 H 0.06 1.49 6.83 -2.39 -0.02 1.47 16 Total: -1.00 -58.76 379.53 -0.75 -59.51 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.84 Total: 19.37 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 4.33 Total: -37.29 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -7.94 Total: -88.14 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -58.76 -0.75 -59.51 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341217.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.337 kcal (2) G-P(sol) polarization free energy of solvation -58.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds