Wall clock time and date at job start Sat Apr 11 2020 00:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48497 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46856 * 299.99886 * 3 2 1 6 6 H 1.48499 * 109.46969 * 59.99908 * 3 2 1 7 7 C 1.37877 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00127 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47206 * 185.00664 * 9 7 2 11 11 C 1.46954 * 111.00212 * 295.17905 * 10 9 7 12 12 C 1.53049 * 109.36485 * 183.19076 * 11 10 9 13 13 N 1.46959 * 109.35914 * 301.59441 * 12 11 10 14 14 C 1.46899 * 110.99682 * 183.18698 * 13 12 11 15 15 H 1.09004 * 109.47251 * 55.00449 * 14 13 12 16 16 C 1.53004 * 109.47543 * 295.00309 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47200 * 59.99842 * 17 16 14 19 19 C 1.52997 * 109.47261 * 300.00530 * 18 17 16 20 20 C 1.52995 * 109.47209 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47540 * 179.97438 * 20 19 18 22 22 C 1.53010 * 109.46582 * 299.99604 * 21 20 19 23 23 C 1.53005 * 109.46800 * 59.99952 * 22 21 20 24 24 C 1.52997 * 109.47261 * 299.99389 * 23 22 21 25 25 C 1.52996 * 109.47446 * 59.99621 * 19 18 17 26 26 C 1.46963 * 110.87910 * 59.32611 * 13 12 11 27 27 C 1.46962 * 110.99537 * 58.97977 * 10 9 7 28 28 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46821 * 65.00555 * 9 7 2 30 30 H 1.08998 * 109.46791 * 305.01007 * 9 7 2 31 31 H 1.09001 * 109.49101 * 63.21794 * 11 10 9 32 32 H 1.09005 * 109.48598 * 303.15470 * 11 10 9 33 33 H 1.09000 * 109.48602 * 181.63695 * 12 11 10 34 34 H 1.08990 * 109.50833 * 61.57279 * 12 11 10 35 35 H 1.08995 * 109.46729 * 300.00374 * 16 14 13 36 36 H 1.08999 * 109.46807 * 60.00090 * 16 14 13 37 37 H 1.08999 * 109.47143 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.47088 * 300.00377 * 17 16 14 39 39 H 1.09004 * 109.46590 * 59.99774 * 18 17 16 40 40 H 1.08995 * 109.47438 * 179.97438 * 18 17 16 41 41 H 1.09005 * 109.47165 * 299.99210 * 20 19 18 42 42 H 1.08995 * 109.47431 * 59.99425 * 20 19 18 43 43 H 1.08997 * 109.47435 * 180.02562 * 21 20 19 44 44 H 1.08995 * 109.47195 * 59.99321 * 21 20 19 45 45 H 1.08995 * 109.47125 * 299.99761 * 22 21 20 46 46 H 1.08999 * 109.46939 * 179.97438 * 22 21 20 47 47 H 1.08999 * 109.46663 * 179.97438 * 23 22 21 48 48 H 1.08992 * 109.46953 * 60.00095 * 23 22 21 49 49 H 1.08995 * 109.47393 * 300.00638 * 24 23 22 50 50 H 1.08997 * 109.47104 * 179.97438 * 24 23 22 51 51 H 1.09002 * 109.47285 * 180.02562 * 25 19 18 52 52 H 1.08990 * 109.47250 * 60.00066 * 25 19 18 53 53 H 1.08994 * 109.48902 * 60.64344 * 26 13 12 54 54 H 1.09005 * 109.48567 * 180.70840 * 26 13 12 55 55 H 1.09001 * 109.48753 * 296.77228 * 27 10 9 56 56 H 1.09000 * 109.49041 * 56.82344 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6131 0.1220 11 6 3.0789 -3.6872 -1.0541 12 6 3.9975 -4.9046 -0.9258 13 7 4.7854 -4.7924 0.3096 14 6 5.7353 -5.9063 0.4312 15 1 6.3586 -5.9514 -0.4619 16 6 4.9649 -7.2195 0.5822 17 6 5.9543 -8.3797 0.7082 18 6 6.8398 -8.1637 1.9371 19 6 7.6102 -6.8505 1.7861 20 6 8.4952 -6.6342 3.0152 21 6 9.2661 -5.3213 2.8641 22 6 10.1411 -5.3852 1.6105 23 6 9.2561 -5.6015 0.3813 24 6 8.4852 -6.9144 0.5325 25 6 6.6208 -5.6903 1.6602 26 6 3.9074 -4.7183 1.4859 27 6 2.9888 -3.5008 1.3575 28 1 -0.4850 0.8401 -0.0004 29 1 0.6937 -2.5969 -0.9312 30 1 0.5585 -2.5188 0.8420 31 1 3.6821 -2.7813 -1.1155 32 1 2.4726 -3.7825 -1.9550 33 1 4.6694 -4.9451 -1.7831 34 1 3.3957 -5.8127 -0.8921 35 1 4.3416 -7.1744 1.4752 36 1 4.3344 -7.3736 -0.2935 37 1 5.4054 -9.3153 0.8153 38 1 6.5772 -8.4246 -0.1851 39 1 6.2168 -8.1188 2.8304 40 1 7.5444 -8.9905 2.0271 41 1 7.8719 -6.5891 3.9084 42 1 9.2000 -7.4607 3.1055 43 1 9.8970 -5.1675 3.7395 44 1 8.5616 -4.4946 2.7736 45 1 10.8457 -6.2119 1.7010 46 1 10.6900 -4.4497 1.5025 47 1 9.8794 -5.6466 -0.5118 48 1 8.5516 -4.7748 0.2909 49 1 9.1898 -7.7411 0.6230 50 1 7.8544 -7.0683 -0.3429 51 1 7.1697 -4.7548 1.5522 52 1 5.9979 -5.6454 2.5534 53 1 3.3043 -5.6241 1.5471 54 1 4.5137 -4.6230 2.3867 55 1 3.5910 -2.5929 1.3236 56 1 2.3169 -3.4599 2.2148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173343261.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:30 Heat of formation + Delta-G solvation = -38.184844 kcal Electronic energy + Delta-G solvation = -29557.233501 eV Core-core repulsion = 26077.586762 eV Total energy + Delta-G solvation = -3479.646740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73488 -39.90199 -37.49649 -35.63767 -34.35556 -32.07434 -31.81765 -31.36762 -31.05234 -28.73479 -26.81377 -26.48140 -24.48558 -23.82694 -23.66997 -23.05425 -22.00352 -21.10507 -20.10493 -18.82379 -18.36418 -17.43065 -16.77630 -16.19949 -16.17765 -15.82481 -15.70433 -15.55821 -15.22588 -14.95229 -14.85020 -14.80497 -14.68209 -14.09842 -13.92302 -13.79959 -13.48686 -13.29792 -13.02026 -12.97438 -12.89214 -12.78814 -12.67349 -12.48105 -12.23758 -12.10588 -12.05315 -11.99243 -11.87505 -11.79360 -11.67930 -11.55329 -11.41277 -11.36482 -11.11921 -10.83444 -10.63071 -10.61956 -10.47819 -9.15727 -8.96558 -8.16556 -6.36051 1.34398 1.35683 1.48124 2.36337 2.98593 3.07835 3.38544 3.65144 3.78105 3.86097 3.99387 4.11840 4.16685 4.20329 4.25313 4.29389 4.38308 4.45924 4.49305 4.50635 4.52342 4.58623 4.63363 4.66463 4.70326 4.72885 4.76124 4.77383 4.88411 4.89003 4.92407 5.05208 5.10042 5.12795 5.17139 5.17644 5.22198 5.23887 5.24844 5.26025 5.26894 5.31636 5.36562 5.39434 5.40375 5.45178 5.53280 5.55664 5.71357 5.72738 5.75114 6.03144 6.18560 6.18938 6.37220 6.52749 6.85006 7.35329 8.86015 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003271 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.123949 B = 8558.684894 C = 9467.401114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.200 3.800 10 N -0.542 5.542 11 C 0.066 3.934 12 C 0.071 3.929 13 N -0.542 5.542 14 C 0.091 3.909 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.105 4.105 19 C -0.047 4.047 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.106 4.106 25 C -0.096 4.096 26 C 0.071 3.929 27 C 0.068 3.932 28 H 0.265 0.735 29 H 0.002 0.998 30 H 0.006 0.994 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.053 0.947 53 H 0.040 0.960 54 H 0.086 0.914 55 H 0.021 0.979 56 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.452 -18.317 3.611 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.266 5.266 11 C -0.063 4.063 12 C -0.057 4.057 13 N -0.266 5.266 14 C -0.017 4.017 15 H 0.102 0.898 16 C -0.187 4.187 17 C -0.148 4.148 18 C -0.143 4.143 19 C -0.047 4.047 20 C -0.141 4.141 21 C -0.161 4.161 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.143 4.143 25 C -0.133 4.133 26 C -0.058 4.058 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.072 0.928 53 H 0.058 0.942 54 H 0.104 0.896 55 H 0.040 0.960 56 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.290 -18.198 3.605 27.492 hybrid contribution -0.438 1.467 -0.078 1.533 sum 19.852 -16.731 3.528 26.200 Atomic orbital electron populations 1.70071 1.07529 1.27804 1.51252 1.25808 0.95610 1.02811 0.94518 0.85514 0.78837 0.79433 0.77951 1.19428 1.20185 1.20195 1.21975 0.93256 0.92945 1.51007 0.92800 1.19388 0.91251 0.86894 0.95114 1.62622 1.17540 1.43862 1.02562 1.21949 0.94010 0.97015 0.93337 1.22061 0.94700 0.96136 0.92844 1.62346 1.18190 1.43980 1.02039 1.21777 0.92959 0.87335 0.99616 0.89844 1.22164 0.98852 0.96329 1.01344 1.21466 0.97207 0.97130 0.98987 1.21574 0.98170 0.96760 0.97749 1.20450 0.94302 0.94305 0.95662 1.21538 0.98052 0.97669 0.96845 1.21575 0.98606 0.97890 0.97983 1.21492 0.97701 1.01530 0.94503 1.21574 0.98544 0.98032 0.97945 1.21635 0.97979 0.97468 0.97210 1.21658 0.96523 0.98670 0.96462 1.22092 0.93579 0.96221 0.93860 1.21919 0.94726 0.96927 0.92528 0.92583 0.97943 0.97605 0.96184 0.91938 0.89528 0.94012 0.92671 0.92713 0.91719 0.91161 0.92495 0.90845 0.92350 0.91121 0.91789 0.92894 0.91463 0.92520 0.91967 0.92905 0.91315 0.91769 0.91758 0.92813 0.94186 0.89616 0.96046 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.55 -31.70 7.66 25.60 0.20 -31.50 16 8 H 0.05 3.11 5.82 -2.91 -0.02 3.09 16 9 C 0.20 10.96 5.14 85.56 0.44 11.40 16 10 N -0.54 -24.46 4.92 -900.26 -4.43 -28.89 16 11 C 0.07 2.65 5.32 86.31 0.46 3.11 16 12 C 0.07 2.20 5.25 86.31 0.45 2.65 16 13 N -0.54 -16.05 4.70 -870.45 -4.09 -20.14 16 14 C 0.09 2.03 1.96 44.92 0.09 2.12 16 15 H 0.08 1.84 6.40 -2.39 -0.02 1.82 16 16 C -0.15 -3.02 4.50 30.59 0.14 -2.89 16 17 C -0.11 -1.70 5.65 30.59 0.17 -1.53 16 18 C -0.11 -1.51 4.73 30.59 0.14 -1.36 16 19 C -0.05 -0.72 0.51 -52.18 -0.03 -0.74 16 20 C -0.10 -1.49 4.73 30.59 0.14 -1.35 16 21 C -0.12 -1.90 5.65 30.60 0.17 -1.73 16 22 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16 23 C -0.12 -1.97 5.65 30.59 0.17 -1.80 16 24 C -0.11 -1.54 4.04 30.60 0.12 -1.41 16 25 C -0.10 -1.94 3.13 30.60 0.10 -1.85 16 26 C 0.07 2.23 4.82 86.31 0.42 2.65 16 27 C 0.07 2.79 5.24 86.31 0.45 3.25 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.00 0.14 8.12 -2.38 -0.02 0.12 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.02 0.91 6.78 -2.39 -0.02 0.89 16 32 H 0.06 2.51 8.12 -2.38 -0.02 2.49 16 33 H 0.09 2.35 8.12 -2.39 -0.02 2.33 16 34 H 0.04 1.27 6.60 -2.39 -0.02 1.25 16 35 H 0.05 1.25 6.45 -2.39 -0.02 1.24 16 36 H 0.05 1.21 6.59 -2.39 -0.02 1.19 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.01 6.43 -2.39 -0.02 1.00 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 0.98 6.43 -2.39 -0.02 0.97 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 1.04 6.43 -2.39 -0.02 1.02 16 49 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.06 0.98 4.81 -2.39 -0.01 0.97 16 51 H 0.06 1.48 4.81 -2.39 -0.01 1.47 16 52 H 0.05 1.18 6.36 -2.39 -0.02 1.16 16 53 H 0.04 1.25 6.46 -2.39 -0.02 1.24 16 54 H 0.09 2.45 6.18 -2.38 -0.01 2.44 16 55 H 0.02 0.99 6.62 -2.39 -0.02 0.97 16 56 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -62.35 382.64 -1.09 -63.44 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.83 Total: 15.74 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.29 Total: -21.34 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -8.23 Total: -104.96 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -62.35 -1.09 -63.44 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173343261.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.252 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds