Wall clock time and date at job start Sat Apr 11 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48499 * 109.47176 * 269.99756 * 3 2 1 5 5 H 1.48497 * 109.47170 * 29.99523 * 3 2 1 6 6 H 1.48500 * 109.47309 * 149.99949 * 3 2 1 7 7 C 1.37881 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99963 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99925 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40091 * 66.46113 * 9 7 2 11 11 O 1.42100 * 106.40122 * 293.54188 * 9 7 2 12 12 N 1.65596 * 107.21659 * 180.02562 * 9 7 2 13 13 C 1.39726 * 119.99827 * 67.74424 * 12 9 7 14 14 C 1.38949 * 120.04840 * 326.45693 * 13 12 9 15 15 C 1.38129 * 120.04446 * 180.02562 * 14 13 12 16 16 C 1.38231 * 120.13577 * 359.97438 * 15 14 13 17 17 C 1.38748 * 120.09709 * 0.02562 * 16 15 14 18 18 O 1.35925 * 120.02063 * 179.72116 * 17 16 15 19 19 C 1.38670 * 119.96306 * 359.97438 * 17 16 15 20 20 Br 1.89101 * 120.07270 * 180.02562 * 19 17 16 21 21 H 0.96989 * 120.00264 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00527 * 247.73926 * 12 9 7 23 23 H 1.08003 * 119.98272 * 0.02562 * 14 13 12 24 24 H 1.07997 * 119.93293 * 179.97438 * 15 14 13 25 25 H 1.08002 * 119.94398 * 179.97438 * 16 15 14 26 26 H 0.96697 * 113.99725 * 89.99933 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7666 -1.1940 -0.0001 10 8 4.1683 -0.6488 1.2491 11 8 4.1674 -0.6504 -1.2504 12 7 4.2568 -2.7758 0.0000 13 6 4.0254 -3.5790 -1.1196 14 6 2.8843 -3.3880 -1.8891 15 6 2.6553 -4.1824 -2.9956 16 6 3.5601 -5.1687 -3.3410 17 6 4.7015 -5.3644 -2.5768 18 8 5.5873 -6.3384 -2.9146 19 6 4.9354 -4.5692 -1.4651 20 35 6.4903 -4.8328 -0.4217 21 1 -0.4850 0.8399 0.0004 22 1 4.7046 -3.1447 0.7773 23 1 2.1758 -2.6179 -1.6218 24 1 1.7676 -4.0326 -3.5921 25 1 3.3778 -5.7883 -4.2066 26 1 6.2821 -6.0454 -3.5200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985778.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:43 Heat of formation + Delta-G solvation = -88.411912 kcal Electronic energy + Delta-G solvation = -17354.129087 eV Core-core repulsion = 14185.479445 eV Total energy + Delta-G solvation = -3168.649642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 320.950 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.77537 -37.21649 -35.83031 -34.68065 -34.32859 -33.22424 -31.71090 -28.89221 -28.44062 -26.61816 -22.60915 -22.21348 -19.41966 -18.51695 -17.73596 -17.20765 -16.47084 -15.99104 -15.48520 -14.98806 -14.73108 -14.10813 -13.60584 -13.57841 -13.07166 -12.86066 -12.20818 -12.10563 -11.52364 -11.32139 -11.05776 -10.84913 -10.75725 -10.69526 -10.65568 -10.57926 -10.10945 -9.99411 -9.33984 -9.16465 -8.49752 -7.97470 -6.96109 -5.54355 1.19044 1.37476 1.70662 1.78942 2.97911 3.07921 3.16634 3.64550 3.82438 3.89432 4.23222 4.42759 5.01219 5.05550 5.17527 5.33710 5.57042 5.68594 5.89647 6.14543 6.27942 6.42924 6.64153 6.86356 7.29751 7.37740 7.58012 7.99382 8.51364 10.14497 Molecular weight = 320.95amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.006035 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.560558 B = 4638.497558 C = 5468.965527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.157 3.843 3 Si 0.800 3.200 4 H -0.243 1.243 5 H -0.252 1.252 6 H -0.221 1.221 7 C -1.020 5.020 8 H 0.132 0.868 9 S 2.661 3.339 10 O -0.994 6.994 11 O -0.991 6.991 12 N -1.055 6.055 13 C 0.235 3.765 14 C -0.171 4.171 15 C -0.054 4.054 16 C -0.172 4.172 17 C 0.150 3.850 18 O -0.488 6.488 19 C -0.159 4.159 20 Br -0.045 7.045 21 H 0.284 0.716 22 H 0.419 0.581 23 H 0.176 0.824 24 H 0.139 0.861 25 H 0.134 0.866 26 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 -10.183 -5.281 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.064 4.064 3 Si 0.619 3.381 4 H -0.167 1.167 5 H -0.176 1.176 6 H -0.143 1.143 7 C -1.154 5.154 8 H 0.149 0.851 9 S 2.763 3.237 10 O -0.985 6.985 11 O -0.981 6.981 12 N -0.797 5.797 13 C 0.134 3.866 14 C -0.193 4.193 15 C -0.073 4.073 16 C -0.192 4.192 17 C 0.103 3.897 18 O -0.298 6.298 19 C -0.243 4.243 20 Br 0.040 6.960 21 H 0.094 0.906 22 H 0.254 0.746 23 H 0.193 0.807 24 H 0.157 0.843 25 H 0.152 0.848 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.937 -9.680 -4.574 13.946 hybrid contribution -0.234 0.562 -0.073 0.613 sum 8.703 -9.118 -4.647 13.434 Atomic orbital electron populations 1.69959 1.06483 1.29416 1.38187 1.24378 0.94811 0.98722 0.88538 0.87879 0.83589 0.84510 0.82103 1.16683 1.17603 1.14326 1.30397 1.14662 1.02639 1.67674 0.85063 1.02080 0.77983 0.69852 0.73737 1.93507 1.85612 1.74467 1.44866 1.93462 1.85025 1.74741 1.44875 1.53965 1.72867 1.31462 1.21428 1.17016 0.91746 0.90115 0.87735 1.22132 0.96455 1.03726 0.96942 1.20998 0.98434 0.92832 0.95043 1.21271 0.95547 1.00850 1.01533 1.17841 0.91228 0.88198 0.92454 1.84816 1.42009 1.34361 1.68646 1.22114 0.96402 1.04443 1.01345 1.96597 1.33313 1.96772 1.69339 0.90551 0.74551 0.80723 0.84319 0.84771 0.75278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.92 13.96 55.43 0.77 -21.14 15 2 C 0.16 4.22 5.47 -17.82 -0.10 4.12 15 3 Si 0.80 19.56 26.54 -169.99 -4.51 15.05 15 4 H -0.24 -5.79 7.11 56.52 0.40 -5.39 15 5 H -0.25 -5.67 7.11 56.52 0.40 -5.27 15 6 H -0.22 -5.57 5.60 56.52 0.32 -5.25 15 7 C -1.02 -26.43 8.13 30.60 0.25 -26.19 15 8 H 0.13 3.36 7.10 -52.49 -0.37 2.99 15 9 S 2.66 64.55 3.85 -107.50 -0.41 64.13 15 10 O -0.99 -25.96 16.02 -57.17 -0.92 -26.87 15 11 O -0.99 -25.49 16.27 -57.17 -0.93 -26.42 15 12 N -1.05 -20.94 5.48 32.42 0.18 -20.77 15 13 C 0.24 4.39 6.17 -83.77 -0.52 3.87 15 14 C -0.17 -3.13 8.96 -39.36 -0.35 -3.48 15 15 C -0.05 -0.78 10.03 -39.62 -0.40 -1.18 15 16 C -0.17 -2.25 9.98 -39.40 -0.39 -2.64 15 17 C 0.15 2.13 6.69 -39.23 -0.26 1.87 15 18 O -0.49 -5.77 12.84 -19.50 -0.25 -6.03 15 19 C -0.16 -2.60 6.25 -39.20 -0.25 -2.85 15 20 Br -0.05 -0.66 31.91 -68.01 -2.17 -2.83 15 21 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.42 7.38 7.95 -34.47 -0.27 7.11 15 23 H 0.18 3.56 4.45 -52.48 -0.23 3.33 15 24 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.39 2.90 9.06 45.56 0.41 3.32 15 LS Contribution 261.37 15.07 3.94 3.94 Total: -1.00 -30.98 261.37 -6.85 -37.83 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -0.53 Total: 9.59 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.02 Total: -26.48 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.95 Total: -41.91 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -2.10 Total: -59.32 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.51 Total: 15.05 kcal Atomic # 16 Polarization: 64.55 SS G_CDS: -0.41 Total: 64.13 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.17 Total: -2.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.98 -6.85 -37.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985778.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.581 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds