Wall clock time and date at job start Sat Apr 11 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86790 * 119.99991 * 2 1 4 4 H 1.48498 * 109.47202 * 270.00369 * 3 2 1 5 5 H 1.48508 * 109.47300 * 30.00322 * 3 2 1 6 6 H 1.48504 * 109.47120 * 150.00052 * 3 2 1 7 7 C 1.37880 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47164 * 59.99992 * 10 9 7 12 12 C 1.52999 * 109.46626 * 59.99702 * 11 10 9 13 13 N 1.46906 * 109.46904 * 179.97438 * 12 11 10 14 14 C 1.46850 * 110.99590 * 55.79410 * 13 12 11 15 15 C 1.53042 * 109.52103 * 185.83845 * 14 13 12 16 16 C 1.53115 * 109.27894 * 300.81998 * 15 14 13 17 17 C 1.52997 * 109.52506 * 177.56175 * 16 15 14 18 18 H 1.08994 * 109.46258 * 185.29592 * 17 16 15 19 19 C 1.53041 * 109.46136 * 65.31752 * 17 16 15 20 20 C 1.53119 * 109.27505 * 180.81104 * 19 17 16 21 21 C 1.53109 * 109.16632 * 57.65171 * 20 19 17 22 22 C 1.53034 * 109.28014 * 302.34636 * 21 20 19 23 23 N 1.46845 * 109.52281 * 59.17666 * 22 21 20 24 24 C 1.53120 * 109.16210 * 57.65564 * 16 15 14 25 25 C 1.46848 * 111.00256 * 179.97438 * 13 12 11 26 26 C 1.52997 * 109.47592 * 300.00035 * 12 11 10 27 27 C 1.52996 * 109.47165 * 60.00300 * 26 12 11 28 28 H 0.96998 * 119.99866 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46436 * 60.00145 * 9 7 2 30 30 H 1.09001 * 109.46922 * 300.00241 * 10 9 7 31 31 H 1.09000 * 109.47140 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.46955 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47050 * 300.00004 * 11 10 9 34 34 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 35 35 H 1.08996 * 109.46193 * 305.85669 * 14 13 12 36 36 H 1.08998 * 109.46244 * 65.82049 * 14 13 12 37 37 H 1.09004 * 109.49824 * 180.88288 * 15 14 13 38 38 H 1.08999 * 109.50462 * 60.76433 * 15 14 13 39 39 H 1.09008 * 109.57318 * 297.71806 * 16 15 14 40 40 H 1.09001 * 109.50066 * 300.74711 * 19 17 16 41 41 H 1.08998 * 109.50532 * 60.82823 * 19 17 16 42 42 H 1.09008 * 109.52139 * 177.56019 * 20 19 17 43 43 H 1.09002 * 109.52196 * 297.67849 * 20 19 17 44 44 H 1.09004 * 109.50708 * 62.28356 * 21 20 19 45 45 H 1.08999 * 109.50731 * 182.36785 * 21 20 19 46 46 H 1.09005 * 109.46740 * 179.19442 * 22 21 20 47 47 H 1.09002 * 109.46543 * 299.17555 * 22 21 20 48 48 H 1.00902 * 111.00599 * 174.16397 * 23 22 21 49 49 H 1.08993 * 109.50444 * 182.40906 * 24 16 15 50 50 H 1.08994 * 109.50488 * 62.28418 * 24 16 15 51 51 H 1.08997 * 109.46220 * 294.18548 * 25 13 12 52 52 H 1.09005 * 109.45649 * 54.15037 * 25 13 12 53 53 H 1.09000 * 109.47140 * 300.00346 * 26 12 11 54 54 H 1.09001 * 109.47375 * 180.02562 * 26 12 11 55 55 H 1.08992 * 109.47534 * 180.02562 * 27 26 12 56 56 H 1.08996 * 109.47134 * 59.99508 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 3.5111 -3.3581 -1.2499 12 6 4.0206 -2.6371 -2.4994 13 7 3.5310 -3.3302 -3.6986 14 6 2.0665 -3.4380 -3.6830 15 6 1.6037 -4.2888 -4.8679 16 6 2.0722 -3.6370 -6.1718 17 6 1.6651 -4.5144 -7.3572 18 1 2.0796 -4.0991 -8.2757 19 6 0.1387 -4.5565 -7.4599 20 6 -0.2643 -5.4518 -8.6349 21 6 0.3262 -6.8491 -8.4278 22 6 1.8471 -6.7406 -8.2970 23 7 2.1813 -5.8748 -7.1590 24 6 3.5963 -3.4922 -6.1420 25 6 4.0008 -2.6642 -4.9201 26 6 3.5106 -1.1946 -2.4996 27 6 4.0211 -0.4731 -1.2507 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6805 0.8889 30 1 3.6585 -3.1502 0.8892 31 1 5.1116 -2.6366 -0.0019 32 1 3.8740 -4.3859 -1.2496 33 1 2.4211 -3.3581 -1.2495 34 1 5.1106 -2.6371 -2.4999 35 1 1.7468 -3.9068 -2.7524 36 1 1.6283 -2.4427 -3.7572 37 1 0.5157 -4.3555 -4.8649 38 1 2.0305 -5.2884 -4.7869 39 1 1.6147 -2.6528 -6.2731 40 1 -0.2772 -4.9591 -6.5363 41 1 -0.2431 -3.5485 -7.6220 42 1 -1.3512 -5.5194 -8.6852 43 1 0.1176 -5.0278 -9.5636 44 1 -0.0867 -7.2878 -7.5193 45 1 0.0780 -7.4794 -9.2817 46 1 2.2695 -7.7324 -8.1351 47 1 2.2608 -6.3145 -9.2110 48 1 3.1765 -5.8633 -6.9933 49 1 3.9319 -2.9899 -7.0492 50 1 4.0545 -4.4793 -6.0810 51 1 3.5532 -1.6727 -4.9883 52 1 5.0864 -2.5710 -4.8883 53 1 2.4206 -1.1946 -2.4991 54 1 3.8733 -0.6810 -3.3900 55 1 3.6575 0.5544 -1.2505 56 1 5.1111 -0.4732 -1.2511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246665868.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:27:48 Heat of formation + Delta-G solvation = -37.707720 kcal Electronic energy + Delta-G solvation = -29460.397327 eV Core-core repulsion = 25980.771277 eV Total energy + Delta-G solvation = -3479.626050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 320.252 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17315 -39.90955 -38.02385 -35.23933 -33.99151 -32.87184 -32.04766 -31.45851 -31.28130 -29.39569 -26.67419 -25.50695 -24.59588 -24.10050 -23.46733 -22.72838 -21.65905 -20.73361 -20.30684 -19.67589 -18.12072 -17.58011 -17.11525 -16.55968 -15.94274 -15.82564 -15.63970 -15.41835 -15.29074 -15.09415 -14.81250 -14.64884 -14.55963 -14.21011 -14.09601 -13.92360 -13.78380 -13.54333 -13.30478 -13.07227 -12.99999 -12.69812 -12.57875 -12.27372 -12.19862 -12.02690 -11.97543 -11.79421 -11.75821 -11.66120 -11.58168 -11.43967 -11.17262 -11.07080 -10.93179 -10.86663 -10.69119 -10.60679 -10.54289 -9.22032 -9.04901 -8.24031 -6.22616 1.27082 1.32606 1.42169 2.33945 3.06157 3.13011 3.30858 3.73982 3.78767 3.91783 4.01486 4.03261 4.05632 4.11095 4.25496 4.30261 4.35614 4.42147 4.49187 4.52540 4.57637 4.62966 4.66362 4.69629 4.71686 4.77639 4.79804 4.82082 4.85753 4.86238 4.90953 4.91878 5.02674 5.04474 5.05195 5.07509 5.10419 5.16004 5.20231 5.26289 5.29617 5.35073 5.38617 5.46203 5.48431 5.52776 5.56336 5.60585 5.67415 5.74812 5.85002 6.23685 6.27233 6.36709 6.41369 6.59510 6.82746 7.40321 8.92656 Molecular weight = 320.25amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.003230 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.242880 B = 8666.872444 C = 9167.576850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.011 3.989 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.306 1.306 6 H -0.247 1.247 7 C -0.486 4.486 8 H 0.036 0.964 9 C 0.001 3.999 10 C -0.092 4.092 11 C -0.097 4.097 12 C 0.100 3.900 13 N -0.521 5.521 14 C 0.054 3.946 15 C -0.086 4.086 16 C -0.079 4.079 17 C 0.107 3.893 18 H 0.039 0.961 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.059 3.941 23 N -0.688 5.688 24 C -0.101 4.101 25 C 0.051 3.949 26 C -0.128 4.128 27 C -0.114 4.114 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.005 0.995 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.031 0.969 48 H 0.347 0.653 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.018 0.982 52 H 0.084 0.916 53 H 0.040 0.960 54 H 0.051 0.949 55 H 0.025 0.975 56 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.349 -11.315 -19.216 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.234 1.234 6 H -0.171 1.171 7 C -0.524 4.524 8 H 0.054 0.946 9 C -0.017 4.017 10 C -0.130 4.130 11 C -0.134 4.134 12 C -0.008 4.008 13 N -0.244 5.244 14 C -0.074 4.074 15 C -0.124 4.124 16 C -0.098 4.098 17 C -0.003 4.003 18 H 0.057 0.943 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.070 4.070 23 N -0.322 5.322 24 C -0.139 4.139 25 C -0.077 4.077 26 C -0.167 4.167 27 C -0.152 4.152 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.167 0.833 49 H 0.095 0.905 50 H 0.098 0.902 51 H 0.037 0.963 52 H 0.102 0.898 53 H 0.059 0.941 54 H 0.070 0.930 55 H 0.043 0.957 56 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.874 -11.916 -18.859 23.657 hybrid contribution -0.384 2.515 -0.160 2.549 sum 7.489 -9.401 -19.019 22.499 Atomic orbital electron populations 1.70058 1.08003 1.27318 1.54128 1.25749 0.95197 1.02372 0.95167 0.85963 0.79299 0.79788 0.77994 1.20251 1.23400 1.17135 1.21250 0.91204 0.92425 1.47536 0.94554 1.19243 0.94102 0.94804 0.93586 1.21314 0.99354 0.95233 0.97130 1.21439 1.00184 0.98249 0.93550 1.21587 0.99223 0.90225 0.89759 1.62331 1.09625 1.50594 1.01803 1.22089 0.88252 0.97615 0.99482 1.21405 0.99338 0.99581 0.92066 1.21220 0.96292 0.97696 0.94622 1.21303 0.94973 0.88564 0.95476 0.94301 1.21685 0.95070 0.99666 0.99186 1.21561 1.00672 0.95694 0.97707 1.21580 0.95165 0.96776 1.01914 1.21929 0.96252 0.97390 0.91431 1.60286 1.20080 1.09969 1.41878 1.21592 0.94754 1.00980 0.96556 1.22143 1.00434 0.95119 0.90000 1.21920 1.00567 0.97648 0.96595 1.21745 0.99269 0.97342 0.96813 0.93137 0.96226 0.93446 0.91238 0.91433 0.93846 0.89150 0.92312 0.97711 0.92870 0.89931 0.92712 0.92176 0.92130 0.91684 0.91988 0.92306 0.90494 0.90097 0.95096 0.83260 0.90549 0.90199 0.96324 0.89791 0.94121 0.92995 0.95707 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 2 C 0.01 0.64 5.45 84.65 0.46 1.10 16 3 Si 0.94 46.29 24.37 68.60 1.67 47.96 16 4 H -0.28 -13.17 6.87 99.48 0.68 -12.49 16 5 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.25 -11.26 6.53 99.48 0.65 -10.61 16 7 C -0.49 -27.16 7.19 25.60 0.18 -26.98 16 8 H 0.04 2.26 6.95 -2.91 -0.02 2.24 16 9 C 0.00 0.07 2.18 -11.54 -0.03 0.04 16 10 C -0.09 -3.50 5.41 30.60 0.17 -3.33 16 11 C -0.10 -3.53 4.62 30.60 0.14 -3.39 16 12 C 0.10 3.34 2.29 44.91 0.10 3.44 16 13 N -0.52 -15.65 4.68 -871.08 -4.08 -19.73 16 14 C 0.05 1.81 4.67 86.33 0.40 2.22 16 15 C -0.09 -2.33 4.90 30.65 0.15 -2.18 16 16 C -0.08 -1.78 2.08 -10.72 -0.02 -1.80 16 17 C 0.11 2.00 2.19 44.94 0.10 2.10 16 18 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 19 C -0.12 -2.31 5.15 30.65 0.16 -2.15 16 20 C -0.12 -1.90 6.00 30.67 0.18 -1.71 16 21 C -0.12 -1.73 6.09 30.64 0.19 -1.54 16 22 C 0.06 0.86 6.55 86.33 0.57 1.42 16 23 N -0.69 -11.98 5.47 -491.69 -2.69 -14.67 16 24 C -0.10 -2.02 5.20 30.65 0.16 -1.86 16 25 C 0.05 1.28 4.89 86.33 0.42 1.71 16 26 C -0.13 -5.01 4.30 30.59 0.13 -4.87 16 27 C -0.11 -4.67 4.94 30.59 0.15 -4.52 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.90 4.69 -2.39 -0.01 1.88 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.06 2.23 5.90 -2.39 -0.01 2.22 16 36 H 0.00 0.18 6.71 -2.39 -0.02 0.17 16 37 H 0.05 1.50 6.69 -2.39 -0.02 1.49 16 38 H 0.08 2.23 7.39 -2.39 -0.02 2.21 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 1.37 6.60 -2.39 -0.02 1.35 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 46 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.35 5.53 6.96 -89.69 -0.62 4.91 16 49 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.08 1.48 6.54 -2.39 -0.02 1.46 16 51 H 0.02 0.53 6.63 -2.39 -0.02 0.52 16 52 H 0.08 1.87 8.12 -2.38 -0.02 1.85 16 53 H 0.04 1.93 5.71 -2.39 -0.01 1.92 16 54 H 0.05 1.84 6.54 -2.39 -0.02 1.83 16 55 H 0.02 1.10 3.27 -2.39 -0.01 1.09 16 56 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -63.69 379.46 -1.04 -64.73 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.14 Total: 24.17 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 3.62 Total: -42.32 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -6.47 Total: -94.54 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -63.69 -1.04 -64.73 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246665868.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.024 kcal (2) G-P(sol) polarization free energy of solvation -63.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds