Wall clock time and date at job start Sat Apr 11 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52286 * 2 1 4 4 C 1.53123 * 109.52334 * 239.87259 * 2 1 3 5 5 C 1.53037 * 109.27398 * 182.37923 * 4 2 1 6 6 N 1.46848 * 109.52381 * 59.18254 * 5 4 2 7 7 C 1.38589 * 110.99561 * 174.15679 * 6 5 4 8 8 N 1.31212 * 126.46943 * 123.98055 * 7 6 5 9 9 N 1.28527 * 109.86057 * 179.97438 * 8 7 6 10 10 C 1.30301 * 110.05268 * 359.97438 * 9 8 7 11 11 C 1.50693 * 126.34441 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46998 * 89.97978 * 11 10 9 13 13 C 1.53002 * 109.47249 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47415 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00212 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47281 * 89.99882 * 18 16 14 20 20 H 1.48507 * 109.46898 * 209.99460 * 18 16 14 21 21 H 1.48498 * 109.47383 * 329.99487 * 18 16 14 22 22 N 1.36445 * 126.47585 * 303.65977 * 7 6 5 23 23 C 1.46506 * 127.13747 * 0.04406 * 22 7 6 24 24 C 1.46845 * 111.19518 * 298.25146 * 6 5 4 25 25 C 1.53120 * 109.52168 * 120.12772 * 2 1 3 26 26 C 1.53000 * 109.50184 * 297.56274 * 25 2 1 27 27 C 1.52996 * 109.50447 * 57.68083 * 25 2 1 28 28 H 1.09003 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47335 * 300.00210 * 1 2 3 30 30 H 1.09001 * 109.46737 * 59.99859 * 1 2 3 31 31 H 1.08996 * 109.50077 * 302.31945 * 4 2 1 32 32 H 1.08992 * 109.50259 * 62.43724 * 4 2 1 33 33 H 1.09006 * 109.45986 * 179.19524 * 5 4 2 34 34 H 1.08996 * 109.46322 * 299.16841 * 5 4 2 35 35 H 1.09002 * 109.46880 * 209.97368 * 11 10 9 36 36 H 1.08994 * 109.47857 * 329.97533 * 11 10 9 37 37 H 1.09001 * 109.47276 * 299.99685 * 12 11 10 38 38 H 1.09005 * 109.47288 * 59.99672 * 12 11 10 39 39 H 1.09001 * 109.47030 * 300.00210 * 13 12 11 40 40 H 1.09003 * 109.47241 * 59.99394 * 13 12 11 41 41 H 0.97000 * 119.99826 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47207 * 89.99560 * 23 22 7 43 43 H 1.08998 * 109.47551 * 210.00152 * 23 22 7 44 44 H 1.09010 * 109.46839 * 329.99679 * 23 22 7 45 45 H 1.09003 * 109.45905 * 181.76430 * 24 6 5 46 46 H 1.09002 * 109.46166 * 301.73872 * 24 6 5 47 47 H 1.09008 * 109.46892 * 60.00058 * 26 25 2 48 48 H 1.09003 * 109.47443 * 180.02562 * 26 25 2 49 49 H 1.09001 * 109.47737 * 300.00263 * 26 25 2 50 50 H 1.08997 * 109.47324 * 59.99758 * 27 25 2 51 51 H 1.09004 * 109.47383 * 180.02562 * 27 25 2 52 52 H 1.09006 * 109.47486 * 300.00356 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0417 -0.7244 -1.2482 5 6 3.5709 -0.7731 -1.2127 6 7 4.0115 -1.4767 -0.0014 7 6 5.3861 -1.6537 -0.0022 8 7 6.2236 -1.2601 0.9280 9 7 7.4228 -1.5896 0.6035 10 6 7.4214 -2.2082 -0.5432 11 6 8.6265 -2.7535 -1.2652 12 6 8.8716 -4.1992 -0.8286 13 6 10.0948 -4.7531 -1.5621 14 6 10.3359 -6.1773 -1.1325 15 1 9.6824 -6.6410 -0.4083 16 6 11.3915 -6.8882 -1.6631 17 7 12.1876 -6.3235 -2.5445 18 14 11.6907 -8.6533 -1.1300 19 1 10.9442 -9.5739 -2.0246 20 1 13.1426 -8.9550 -1.2094 21 1 11.2233 -8.8342 0.2679 22 7 6.1233 -2.2754 -0.9675 23 6 5.6273 -2.8855 -2.2036 24 6 3.5721 -0.7736 1.2105 25 6 2.0417 -0.7244 1.2482 26 6 1.5834 0.0279 2.4992 27 6 1.4857 -2.1495 1.2758 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6456 -1.7396 -1.2678 32 1 1.7153 -0.1885 -2.1394 33 1 3.9380 -1.3008 -2.0931 34 1 3.9666 0.2425 -1.2069 35 1 8.4501 -2.7237 -2.3405 36 1 9.4999 -2.1479 -1.0235 37 1 9.0480 -4.2291 0.2467 38 1 7.9982 -4.8049 -1.0704 39 1 9.9180 -4.7233 -2.6373 40 1 10.9684 -4.1475 -1.3207 41 1 12.9304 -6.8235 -2.9175 42 1 5.6200 -2.1404 -2.9991 43 1 6.2778 -3.7130 -2.4868 44 1 4.6150 -3.2572 -2.0446 45 1 3.9400 -1.3016 2.0903 46 1 3.9677 0.2421 1.2047 47 1 0.4942 0.0653 2.5220 48 1 1.9482 -0.4879 3.3875 49 1 1.9814 1.0424 2.4795 50 1 1.8141 -2.6849 0.3850 51 1 1.8498 -2.6645 2.1647 52 1 0.3964 -2.1142 1.2973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262867313.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:28:25 Heat of formation + Delta-G solvation = 41.632164 kcal Electronic energy + Delta-G solvation = -27844.176155 eV Core-core repulsion = 24264.450197 eV Total energy + Delta-G solvation = -3579.725958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.07077 -41.06302 -37.08084 -36.73954 -35.66975 -34.26651 -33.63328 -31.42227 -29.78003 -28.39573 -28.28583 -28.09590 -27.45857 -25.57436 -23.83582 -23.05824 -22.40263 -21.92844 -21.46264 -19.14896 -18.56782 -18.17676 -17.45339 -17.27281 -16.56603 -16.21227 -16.11363 -15.78725 -15.54995 -15.18166 -15.13516 -14.71962 -14.42237 -14.25213 -14.00038 -13.92416 -13.62694 -13.44963 -13.28020 -12.96973 -12.83737 -12.77940 -12.70160 -12.65398 -12.58481 -12.57648 -12.42427 -12.09960 -11.96053 -11.71703 -11.58271 -11.40899 -11.35259 -11.25269 -11.17188 -11.11427 -10.97973 -10.71220 -10.53841 -9.27454 -8.19512 -6.29476 0.73040 1.21192 1.39842 1.41294 1.52239 1.75387 2.41399 2.57008 3.13869 3.36343 3.57382 3.59989 3.73522 3.78357 3.84225 4.00572 4.14460 4.22824 4.25391 4.29927 4.35432 4.37884 4.42060 4.54431 4.55570 4.59083 4.61928 4.71563 4.76607 4.81900 4.85365 4.88330 4.98373 5.03303 5.05186 5.08747 5.09558 5.12423 5.16719 5.17231 5.22431 5.29266 5.39601 5.46647 5.51995 5.58864 5.65575 5.72290 5.74694 5.85945 6.14851 6.26311 6.86130 7.39155 7.71846 8.91827 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.002311 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.601804 B =12113.623599 C =12187.556721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.066 0.934 4 C -0.106 4.106 5 C 0.046 3.954 6 N -0.439 5.439 7 C 0.355 3.645 8 N -0.364 5.364 9 N -0.328 5.328 10 C 0.192 3.808 11 C -0.021 4.021 12 C -0.084 4.084 13 C 0.028 3.972 14 C -0.544 4.544 15 H 0.053 0.947 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.270 1.270 22 N -0.479 5.479 23 C 0.064 3.936 24 C 0.086 3.914 25 C -0.051 4.051 26 C -0.141 4.141 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.008 0.992 40 H -0.004 1.004 41 H 0.264 0.736 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.079 0.921 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.060 0.940 51 H 0.039 0.961 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.703 13.744 -0.123 31.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.143 4.143 5 C -0.080 4.080 6 N -0.163 5.163 7 C -0.002 4.002 8 N -0.209 5.209 9 N -0.167 5.167 10 C -0.077 4.077 11 C -0.061 4.061 12 C -0.123 4.123 13 C -0.009 4.009 14 C -0.582 4.582 15 H 0.071 0.929 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.194 1.194 22 N -0.174 5.174 23 C -0.077 4.077 24 C -0.040 4.040 25 C -0.052 4.052 26 C -0.198 4.198 27 C -0.191 4.191 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.098 0.902 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.059 0.941 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.314 13.884 1.023 31.552 hybrid contribution 0.855 -0.834 -0.670 1.369 sum -27.459 13.051 0.353 30.405 Atomic orbital electron populations 1.21883 0.93330 1.02598 1.02370 1.21227 0.97142 0.98580 0.93249 0.91599 1.21728 0.91068 1.02662 0.98863 1.22558 0.98663 0.96476 0.90310 1.58771 1.00835 1.49987 1.06666 1.22920 0.91415 0.97530 0.88361 1.74440 0.96004 1.24912 1.25537 1.73889 1.14287 1.16526 1.11949 1.25056 0.86375 1.01826 0.94465 1.20109 0.90558 0.96238 0.99177 1.21345 0.98735 0.92974 0.99260 1.18981 0.92540 0.94400 0.95012 1.21642 1.12661 0.99300 1.24563 0.92891 1.25888 0.95726 1.02780 0.95090 1.70070 1.17610 1.38751 1.30447 0.85527 0.77413 0.79718 0.78878 1.19453 1.20673 1.19424 1.46197 1.06350 1.44657 1.20232 1.22515 1.02761 1.00119 0.82348 1.22121 0.96385 0.96000 0.89539 1.20641 0.90943 0.97096 0.96512 1.21871 1.02382 0.99670 0.95922 1.21850 1.01041 0.94538 1.01716 0.91801 0.91945 0.91929 0.89894 0.88688 0.88884 0.94390 0.87903 0.89018 0.94375 0.92883 0.97400 0.98544 0.92713 0.87709 0.88349 0.87208 0.91640 0.94330 0.90239 0.92995 0.92665 0.92114 0.94137 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.49 71.98 0.61 -0.45 16 2 C -0.08 -0.88 2.06 -10.71 -0.02 -0.90 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.05 5.03 30.65 0.15 -0.90 16 5 C 0.05 0.71 5.28 86.33 0.46 1.16 16 6 N -0.44 -9.56 3.98 -705.90 -2.81 -12.37 16 7 C 0.36 10.55 7.21 260.11 1.87 12.43 16 8 N -0.36 -13.65 11.24 -58.01 -0.65 -14.30 16 9 N -0.33 -13.24 12.18 -49.54 -0.60 -13.85 16 10 C 0.19 6.63 7.32 137.64 1.01 7.64 16 11 C -0.02 -0.72 5.43 29.85 0.16 -0.55 16 12 C -0.08 -3.49 5.14 30.59 0.16 -3.33 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 18 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 N -0.48 -13.34 3.21 -538.17 -1.73 -15.06 16 23 C 0.06 1.11 9.16 127.77 1.17 2.28 16 24 C 0.09 1.84 3.61 86.37 0.31 2.15 16 25 C -0.05 -0.72 0.55 -52.09 -0.03 -0.75 16 26 C -0.14 -1.73 8.19 71.98 0.59 -1.14 16 27 C -0.13 -1.87 7.62 71.98 0.55 -1.32 16 28 H 0.06 0.45 6.39 -2.39 -0.02 0.43 16 29 H 0.06 0.43 6.51 -2.39 -0.02 0.41 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.81 6.59 -2.39 -0.02 0.79 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.19 5.26 -2.38 -0.01 1.18 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 2.92 7.95 -2.39 -0.02 2.90 16 36 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.10 1.27 7.75 -2.39 -0.02 1.25 16 43 H 0.10 1.80 7.90 -2.39 -0.02 1.78 16 44 H 0.11 1.52 7.68 -2.38 -0.02 1.51 16 45 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 46 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 0.72 6.50 -2.38 -0.02 0.71 16 48 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 0.93 6.01 -2.39 -0.01 0.91 16 51 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.07 0.75 6.39 -2.38 -0.02 0.74 16 Total: -1.00 -73.02 394.13 5.23 -67.79 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.88 Total: 8.97 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 7.84 Total: -12.19 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.51 Total: -111.02 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.02 5.23 -67.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262867313.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.421 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds